Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0006396

Physical Location & Seq

Genomic Coordinates Forward (+)

21769178 .. 21773599

Gene Structure 4422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G012010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGATCAGCGAAAATGGGATCAGTTGGACTATGGTTGTTTGGTGAATATCTTTGGAAAAGTTGGAAGAGGTGGTATGGAGTCATTGCTCATGGATGTTCCTTTTGTCTGCAAGTCATGGCATACAGCAAGCCTTGATCCTAAATGTTGGGAAAGTCTCATTTTTCCCATCATTTTCACTAGTCTTTATAATTCTGATGTTGAAACTGAAGACTGGACTTTTGATCCCTTTTTAAAAAGATTTGTTTTTGAATACCGAATCAACAAGAGCTTCTCCATCACTGCATTCATAAAGTTTATGGTCAGTCGTAGCAAAGGATGTGCTACTGAAATCAGGCTACCTGTGTGCGCTTCAGAAGAAGCACTGAAACGTGTTGCAGCTTCGTGTCCTCGCCTAAAGAATTTGACTTTGCCCACTGATGTAGTCTACTATAAATCAAGAATGATCCCTGATATGATTGGCAAGTGGAAAGATTTGGAGTATTTGCTAATGGGAAGCTGCTACCATGACATGGAGAAAATCATTTCCCAAATAGGCCTTCACTGCAAGAATTTCTATTATTTAGATATTCCTGACTGTCTGGTTCGCAAAGATGCTGCATTGGCAATTGCAAAGTTGCCTAATCTTAAGCACATAATTATGATGAACACAAAGATCGAACGGGTTAATTTTGTTAGATTACTGAAGGGCTGCAAAAAACTTGTGTCATTGGATGCCAGAAATTGTCTTGGTTTCGATGCAGGTGATAAGGAAATATCAAAACTTGCTTCTCATATCAGTGATTTCAAATGCCAAGCCCCGAACGACTTGCTCTTCTCCACGAACTGCCCCCTCACTGCTCTTCTCATCGACTCGGGTAAATCATCCATAATTTCAAGTACCAAGAATGCTCGAGAAGGTATTTTGGTTGGGCTGCAACAGTTCCATAGAGGAACTTCTGCAGTTCATGGATTTTCGAAAATGGGATCATTTGGACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

326

Amino Acids

36.88

Weight (kDa)

8.86

Isoelectric Point (pI)

35.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006396)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33270
prunus_persica	Prupe.1G157900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0265521 RchiOBHm_Chr6g0265531
rosa_laevigata	RLG00000014182
rosa_multiflora	Rmu_co8123530.1_g000001 Rmu_co8387705.1_g000001 Rmu_sc0000217.1_g000007 Rmu_sc0000217.1_g000009 Rmu_sc0006004.1_g000006
rosa_roxburghii	Rroxscaffold_175G00432420 Rroxscaffold_175G00432440 Rroxscaffold_7G00202620 Rroxscaffold_7G00202640
rosa_rugosa	Rorug06G0017300
rosa_samantha	Rh6AG139500 Rh6AG139700 Rh6BG139100 Rh6BG139200 Rh6BG139600 Rh6CG136500 Rh6CG136600 Rh6CG136700 Rh6DG122700 Rh6DG123000
rosa_wichuraiana	Rw6G012010 Rw6G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	189
AarI	CACCTGC	1 cut(s)	731
Acc36I	ACCTGC	1 cut(s)	731
AccB7I	CCANNNNNTGG	1 cut(s)	511
AccI	GTMKAC	1 cut(s)	426
AclWI	GGATC	6 cut(s)	12, 27, 131, 218, 439, 973
AcsI	RAATTY	2 cut(s)	400, 550
AcuI	CTGAAG	3 cut(s)	228, 336, 704
AfaI	GTAC	1 cut(s)	880
AfiI	CCNNNNNNNGG	1 cut(s)	511
AflII	CTTAAG	1 cut(s)	626
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	4 cut(s)	203, 251, 787, 876
AhlI	ACTAGT	1 cut(s)	179
AjuI	GAANNNNNNNTTGG	2 cut(s)	522, 554
AluBI	AGCT	3 cut(s)	270, 380, 498
AluI	AGCT	3 cut(s)	270, 380, 498
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	6 cut(s)	12, 27, 131, 218, 439, 973
Ama87I	CYCGRG	2 cut(s)	853, 891
AoxI	GGCC	1 cut(s)	535
ApeKI	GCWGC	5 cut(s)	377, 498, 596, 690, 913
ApoI	RAATTY	2 cut(s)	400, 550
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
AspLEI	GCGC	1 cut(s)	350
AsuHPI	GGTGA	2 cut(s)	55, 755
AsuII	TTCGAA	1 cut(s)	956
AvaI	CYCGRG	2 cut(s)	853, 891
BbsI	GAAGAC	1 cut(s)	216
BbvI	GCAGC	5 cut(s)	389, 485, 583, 677, 900
BccI	CCATC	2 cut(s)	176, 284
BcgI	CGANNNNNNTGC	2 cut(s)	790, 824
BcoDI	GTCTC	1 cut(s)	161
BcuI	ACTAGT	1 cut(s)	179
BfaI	CTAG	1 cut(s)	180
BfmI	CTRYAG	1 cut(s)	939
BfrI	CTTAAG	1 cut(s)	626
BfuAI	ACCTGC	1 cut(s)	731
BisI	GCNGC	5 cut(s)	378, 499, 597, 691, 914
BlsI	GCNGC	5 cut(s)	379, 500, 598, 692, 915
BmeT110I	CYCGRG	2 cut(s)	853, 891
BmsI	GCATC	3 cut(s)	583, 703, 727
BpiI	GAAGAC	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	956
Bsc4I	CCNNNNNNNGG	1 cut(s)	511
Bse1I	ACTGG	1 cut(s)	218
Bse3DI	GCAATG	1 cut(s)	83
BseGI	GGATG	4 cut(s)	100, 323, 718, 863
BseLI	CCNNNNNNNGG	1 cut(s)	511
BseMI	GCAATG	1 cut(s)	83
BseNI	ACTGG	1 cut(s)	218
BseXI	GCAGC	5 cut(s)	389, 485, 583, 677, 900
BshFI	GGCC	1 cut(s)	537
BsiHKCI	CYCGRG	2 cut(s)	853, 891
BslI	CCNNNNNNNGG	1 cut(s)	511
BsmAI	GTCTC	1 cut(s)	161
BsmI	GAATGC	2 cut(s)	284, 892
BsnI	GGCC	1 cut(s)	537
BsoBI	CYCGRG	2 cut(s)	853, 891
Bsp119I	TTCGAA	1 cut(s)	956
Bsp143I	GATC	7 cut(s)	4, 19, 136, 223, 444, 654, 965
BspANI	GGCC	1 cut(s)	537
BspMAI	CTGCAG	1 cut(s)	943
BspMI	ACCTGC	1 cut(s)	731
BspPI	GGATC	6 cut(s)	12, 27, 131, 218, 439, 973
BspQI	GCTCTTC	2 cut(s)	818, 846
BspT104I	TTCGAA	1 cut(s)	956
BspTI	CTTAAG	1 cut(s)	626
BsrDI	GCAATG	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	218
BssMI	GATC	7 cut(s)	4, 19, 136, 223, 444, 654, 965
Bst4CI	ACNGT	2 cut(s)	578, 921
Bst6I	CTCTTC	3 cut(s)	61, 818, 846
BstAFI	CTTAAG	1 cut(s)	626
BstBI	TTCGAA	1 cut(s)	956
BstC8I	GCNNGC	1 cut(s)	130
BstF5I	GGATG	4 cut(s)	100, 323, 718, 863
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	7 cut(s)	7, 22, 139, 226, 447, 657, 968
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	7 cut(s)	4, 19, 136, 223, 444, 654, 965
BstMWI	GCNNNNNNNGC	2 cut(s)	543, 602
BstSFI	CTRYAG	1 cut(s)	939
BstV1I	GCAGC	5 cut(s)	389, 485, 583, 677, 900
BstV2I	GAAGAC	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	537
BtsCI	GGATG	4 cut(s)	100, 323, 718, 863
BtsI	GCAGTG	3 cut(s)	279, 541, 834
BtsIMutI	CAGTG	6 cut(s)	279, 362, 414, 541, 784, 834
BveI	ACCTGC	1 cut(s)	731
Cac8I	GCNNGC	1 cut(s)	130
CfoI	GCGC	1 cut(s)	350
Csp6I	GTAC	1 cut(s)	879
CviAII	CATG	5 cut(s)	91, 117, 506, 511, 947
CviJI	RGCY	9 cut(s)	132, 270, 337, 380, 498, 537, 690, 797, 913
CviKI_1	RGCY	9 cut(s)	132, 270, 337, 380, 498, 537, 690, 797, 913
CviQI	GTAC	1 cut(s)	879
DpnI	GATC	7 cut(s)	6, 21, 138, 225, 446, 656, 967
DpnII	GATC	7 cut(s)	4, 19, 136, 223, 444, 654, 965
DraI	TTTAAA	1 cut(s)	234
Eam1104I	CTCTTC	3 cut(s)	61, 818, 846
EarI	CTCTTC	3 cut(s)	61, 818, 846
Eco147I	AGGCCT	1 cut(s)	537
Eco57I	CTGAAG	3 cut(s)	228, 336, 704
Eco88I	CYCGRG	2 cut(s)	853, 891
FaeI	CATG	5 cut(s)	94, 120, 509, 514, 950
FatI	CATG	5 cut(s)	90, 116, 505, 510, 946
FblI	GTMKAC	1 cut(s)	426
Fnu4HI	GCNGC	5 cut(s)	378, 499, 597, 691, 914
FokI	GGATG	4 cut(s)	107, 330, 725, 850
Fsp4HI	GCNGC	5 cut(s)	378, 499, 597, 691, 914
FspBI	CTAG	1 cut(s)	180
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	5 cut(s)	378, 499, 597, 691, 914
HaeIII	GGCC	1 cut(s)	537
HhaI	GCGC	1 cut(s)	350
Hin1II	CATG	5 cut(s)	94, 120, 509, 514, 950
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HinfI	GANTC	3 cut(s)	80, 258, 851
HphI	GGTGA	2 cut(s)	55, 755
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	2 cut(s)	196, 355
Hpy188III	TCNNGA	3 cut(s)	438, 572, 893
Hpy8I	GTNNAC	1 cut(s)	427
HpyAV	CCTTC	3 cut(s)	548, 679, 890
HpyCH4III	ACNGT	2 cut(s)	578, 921
HpyCH4IV	ACGT	1 cut(s)	370
HpyF10VI	GCNNNNNNNGC	2 cut(s)	543, 602
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	5 cut(s)	94, 120, 509, 514, 950
HspAI	GCGC	1 cut(s)	348
Kzo9I	GATC	7 cut(s)	4, 19, 136, 223, 444, 654, 965
LguI	GCTCTTC	2 cut(s)	818, 846
LpnPI	CCDG	8 cut(s)	199, 319, 354, 462, 566, 585, 726, 730
Lsp1109I	GCAGC	5 cut(s)	389, 485, 583, 677, 900
LweI	GCATC	3 cut(s)	583, 703, 727
MaeI	CTAG	1 cut(s)	180
MaeII	ACGT	1 cut(s)	370
MalI	GATC	7 cut(s)	6, 21, 138, 225, 446, 656, 967
MboI	GATC	7 cut(s)	4, 19, 136, 223, 444, 654, 965
MboII	GAAGA	5 cut(s)	78, 221, 368, 805, 833
MfeI	CAATTG	1 cut(s)	606
MluCI	AATT	8 cut(s)	190, 400, 550, 606, 636, 667, 721, 870
MlyI	GAGTC	2 cut(s)	89, 845
MmeI	TCCRAC	2 cut(s)	6, 43
MnlI	CCTC	4 cut(s)	62, 399, 842, 923
MseI	TTAA	3 cut(s)	233, 627, 666
MslI	CAYNNNNRTG	2 cut(s)	638, 777
MspCI	CTTAAG	1 cut(s)	626
MunI	CAATTG	1 cut(s)	606
Mva1269I	GAATGC	2 cut(s)	284, 892
MwoI	GCNNNNNNNGC	2 cut(s)	543, 602
NdeII	GATC	7 cut(s)	4, 19, 136, 223, 444, 654, 965
NlaIII	CATG	5 cut(s)	94, 120, 509, 514, 950
NspV	TTCGAA	1 cut(s)	956
PaeR7I	CTCGAG	1 cut(s)	891
PaqCI	CACCTGC	1 cut(s)	731
PceI	AGGCCT	1 cut(s)	537
PciSI	GCTCTTC	2 cut(s)	818, 846
PctI	GAATGC	2 cut(s)	284, 892
PfeI	GAWTC	1 cut(s)	258
PflMI	CCANNNNNTGG	1 cut(s)	511
PkrI	GCNGC	5 cut(s)	379, 500, 598, 692, 915
PleI	GAGTC	2 cut(s)	88, 845
PpsI	GAGTC	2 cut(s)	88, 845
PsiI	TTATAA	1 cut(s)	189
PstI	CTGCAG	1 cut(s)	943
RsaI	GTAC	1 cut(s)	880
RsaNI	GTAC	1 cut(s)	879
RseI	CAYNNNNRTG	2 cut(s)	638, 777
SapI	GCTCTTC	2 cut(s)	818, 846
SaqAI	TTAA	3 cut(s)	233, 627, 666
SatI	GCNGC	5 cut(s)	378, 499, 597, 691, 914
Sau3AI	GATC	7 cut(s)	4, 19, 136, 223, 444, 654, 965
SchI	GAGTC	2 cut(s)	89, 845
SetI	ASST	8 cut(s)	73, 272, 343, 373, 382, 500, 745, 901
SfaNI	GCATC	3 cut(s)	583, 703, 727
SfcI	CTRYAG	1 cut(s)	939
Sfr274I	CTCGAG	1 cut(s)	891
SfuI	TTCGAA	1 cut(s)	956
SlaI	CTCGAG	1 cut(s)	891
SmiMI	CAYNNNNRTG	2 cut(s)	638, 777
SmlI	CTYRAG	2 cut(s)	626, 891
SmoI	CTYRAG	2 cut(s)	626, 891
SpeI	ACTAGT	1 cut(s)	179
Sse9I	AATT	8 cut(s)	190, 400, 550, 606, 636, 667, 721, 870
SseBI	AGGCCT	1 cut(s)	537
SspMI	CTAG	1 cut(s)	180
StuI	AGGCCT	1 cut(s)	537
TaaI	ACNGT	2 cut(s)	578, 921
TaiI	ACGT	1 cut(s)	373
TaqI	TCGA	5 cut(s)	657, 735, 849, 892, 956
TasI	AATT	8 cut(s)	190, 400, 550, 606, 636, 667, 721, 870
TfiI	GAWTC	1 cut(s)	258
Tru1I	TTAA	3 cut(s)	233, 627, 666
Tru9I	TTAA	3 cut(s)	233, 627, 666
TscAI	CASTG	6 cut(s)	286, 369, 421, 548, 784, 841
TseI	GCWGC	5 cut(s)	377, 498, 596, 690, 913
TspDTI	ATGAA	3 cut(s)	277, 659, 935
TspRI	CASTG	6 cut(s)	286, 369, 421, 548, 784, 841
Van91I	CCANNNNNTGG	1 cut(s)	511
Vha464I	CTTAAG	1 cut(s)	626
XapI	RAATTY	2 cut(s)	400, 550
XhoI	CTCGAG	1 cut(s)	891
XmiI	GTMKAC	1 cut(s)	426
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.