Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006396

Physical Location & Seq

Genomic Coordinates Reverse (-)

50807851 .. 50809201

Gene Structure 1351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00202640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTTGAAACTGAAGACTGGACTTTTTGATCCCTTTTTAAAAAGATTTGTTTTTGAATACCGAATCAACAAGAGCTTCTCCATCACTGCATTCATAATGTTTATGGTCAATCGTAGCAAAGGATGTGCTACTGAAATCAGGCTACCTGTGTGTGCTTCACAAGAAGCACTGAAACATGTTGCAGCTTCGTGTCCTTGCCTAAAGAATTTGACTTTGCCCACTGACGTAGTCTACTATAAATCAAGAATGATCCCTGATATGATTGGCAAGTGGAAAGATTTGGAGTATTTGCTAATGGGAAGCTGCTACCATGATATGGAGAAAATCATTTCCCAAATAGGCCTTCACTGCAAGAATTTCTATTATTTAGATATTCCTGACTGTCTGGTTCGCAAAGATGCTGCATTGGCAATTGCAAAGTTGCCTAACCTTAAGCACATAATTATGATGAATGCAAAGATTGAACGGGTTAATTTTGTTAGATTACTGAAGGGCTGCAAAAAACTTGTGTCATTGGATGCCAGAAATTGTCTGGGTTTCGATGCAGGTGATAAGGAAATATCAAAACTTGCTTCTCATATCAGTGATTTCAAATGCCAAGGTTCTAGATTTTTTGATCGCCATTCCAAGGAGGGAAAATATGTTTGGTTTCATGATTCTGTCTATGATGGACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

225

Amino Acids

25.93

Weight (kDa)

9.29

Isoelectric Point (pI)

32.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006396)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33270
prunus_persica	Prupe.1G157900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0265521 RchiOBHm_Chr6g0265531
rosa_laevigata	RLG00000014182
rosa_multiflora	Rmu_co8123530.1_g000001 Rmu_co8387705.1_g000001 Rmu_sc0000217.1_g000007 Rmu_sc0000217.1_g000009 Rmu_sc0006004.1_g000006
rosa_roxburghii	Rroxscaffold_175G00432420 Rroxscaffold_175G00432440 Rroxscaffold_7G00202620 Rroxscaffold_7G00202640
rosa_rugosa	Rorug06G0017300
rosa_samantha	Rh6AG139500 Rh6AG139700 Rh6BG139100 Rh6BG139200 Rh6BG139600 Rh6CG136500 Rh6CG136600 Rh6CG136700 Rh6DG122700 Rh6DG123000
rosa_wichuraiana	Rw6G012010 Rw6G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	536
Acc36I	ACCTGC	1 cut(s)	536
AccB7I	CCANNNNNTGG	1 cut(s)	316
AccI	GTMKAC	1 cut(s)	231
AclWI	GGATC	2 cut(s)	23, 244
AcsI	RAATTY	2 cut(s)	205, 355
AcuI	CTGAAG	2 cut(s)	32, 509
AfiI	CCNNNNNNNGG	2 cut(s)	316, 628
AflII	CTTAAG	1 cut(s)	431
AflIII	ACRYGT	1 cut(s)	175
AgsI	TTSAA	4 cut(s)	7, 56, 464, 592
AjuI	GAANNNNNNNTTGG	4 cut(s)	327, 359, 628, 660
AluBI	AGCT	3 cut(s)	75, 185, 303
AluI	AGCT	3 cut(s)	75, 185, 303
AlwI	GGATC	2 cut(s)	23, 244
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	4 cut(s)	182, 303, 401, 495
ApoI	RAATTY	2 cut(s)	205, 355
AsuHPI	GGTGA	1 cut(s)	560
BbsI	GAAGAC	1 cut(s)	20
BbvI	GCAGC	4 cut(s)	194, 290, 388, 482
BccI	CCATC	2 cut(s)	89, 662
BfaI	CTAG	1 cut(s)	606
BfrI	CTTAAG	1 cut(s)	431
BfuAI	ACCTGC	1 cut(s)	536
BisI	GCNGC	4 cut(s)	183, 304, 402, 496
BlsI	GCNGC	4 cut(s)	184, 305, 403, 497
BmsI	GCATC	3 cut(s)	388, 508, 532
BpiI	GAAGAC	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	598, 627
Bsc4I	CCNNNNNNNGG	2 cut(s)	316, 628
Bse1I	ACTGG	1 cut(s)	22
BseDI	CCNNGG	2 cut(s)	598, 627
BseGI	GGATG	2 cut(s)	128, 523
BseLI	CCNNNNNNNGG	2 cut(s)	316, 628
BseNI	ACTGG	1 cut(s)	22
BseXI	GCAGC	4 cut(s)	194, 290, 388, 482
BshFI	GGCC	1 cut(s)	342
BslI	CCNNNNNNNGG	2 cut(s)	316, 628
BsmI	GAATGC	2 cut(s)	89, 457
BsnI	GGCC	1 cut(s)	342
Bsp143I	GATC	3 cut(s)	28, 249, 616
BspANI	GGCC	1 cut(s)	342
BspHI	TCATGA	1 cut(s)	652
BspMI	ACCTGC	1 cut(s)	536
BspPI	GGATC	2 cut(s)	23, 244
BspTI	CTTAAG	1 cut(s)	431
BsrI	ACTGG	1 cut(s)	22
BssECI	CCNNGG	2 cut(s)	598, 627
BssMI	GATC	3 cut(s)	28, 249, 616
BssT1I	CCWWGG	2 cut(s)	598, 627
Bst4CI	ACNGT	1 cut(s)	383
BstAFI	CTTAAG	1 cut(s)	431
BstF5I	GGATG	2 cut(s)	128, 523
BstKTI	GATC	3 cut(s)	31, 252, 619
BstMBI	GATC	3 cut(s)	28, 249, 616
BstMWI	GCNNNNNNNGC	2 cut(s)	348, 407
BstNSI	RCATGY	1 cut(s)	179
BstV1I	GCAGC	4 cut(s)	194, 290, 388, 482
BstV2I	GAAGAC	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	342
BtsCI	GGATG	2 cut(s)	128, 523
BtsI	GCAGTG	2 cut(s)	84, 346
BtsIMutI	CAGTG	5 cut(s)	84, 167, 219, 346, 589
BveI	ACCTGC	1 cut(s)	536
CciI	TCATGA	1 cut(s)	652
CviAII	CATG	3 cut(s)	176, 311, 653
CviJI	RGCY	6 cut(s)	75, 142, 185, 303, 342, 495
CviKI_1	RGCY	6 cut(s)	75, 142, 185, 303, 342, 495
DpnI	GATC	3 cut(s)	30, 251, 618
DpnII	GATC	3 cut(s)	28, 249, 616
DraI	TTTAAA	1 cut(s)	39
Eco130I	CCWWGG	2 cut(s)	598, 627
Eco147I	AGGCCT	1 cut(s)	342
Eco57I	CTGAAG	2 cut(s)	32, 509
EcoT14I	CCWWGG	2 cut(s)	598, 627
ErhI	CCWWGG	2 cut(s)	598, 627
FaeI	CATG	3 cut(s)	179, 314, 656
FatI	CATG	3 cut(s)	175, 310, 652
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	4 cut(s)	183, 304, 402, 496
FokI	GGATG	2 cut(s)	135, 530
Fsp4HI	GCNGC	4 cut(s)	183, 304, 402, 496
FspBI	CTAG	1 cut(s)	606
GluI	GCNGC	4 cut(s)	183, 304, 402, 496
HaeIII	GGCC	1 cut(s)	342
Hin1II	CATG	3 cut(s)	179, 314, 656
HinfI	GANTC	2 cut(s)	63, 656
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188III	TCNNGA	4 cut(s)	243, 377, 606, 653
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	2 cut(s)	353, 484
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	8 cut(s)	89, 182, 351, 404, 416, 455, 498, 545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	348, 407
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	3 cut(s)	179, 314, 656
Kzo9I	GATC	3 cut(s)	28, 249, 616
LpnPI	CCDG	9 cut(s)	3, 124, 159, 267, 371, 390, 518, 531, 535
Lsp1109I	GCAGC	4 cut(s)	194, 290, 388, 482
LweI	GCATC	3 cut(s)	388, 508, 532
MaeI	CTAG	1 cut(s)	606
MaeII	ACGT	1 cut(s)	225
MalI	GATC	3 cut(s)	30, 251, 618
MboI	GATC	3 cut(s)	28, 249, 616
MboII	GAAGA	1 cut(s)	25
MfeI	CAATTG	1 cut(s)	411
MluCI	AATT	6 cut(s)	205, 355, 411, 441, 472, 526
MnlI	CCTC	1 cut(s)	625
MseI	TTAA	3 cut(s)	38, 432, 471
MslI	CAYNNNNRTG	2 cut(s)	443, 582
MspCI	CTTAAG	1 cut(s)	431
MunI	CAATTG	1 cut(s)	411
Mva1269I	GAATGC	2 cut(s)	89, 457
MwoI	GCNNNNNNNGC	2 cut(s)	348, 407
NdeII	GATC	3 cut(s)	28, 249, 616
NlaIII	CATG	3 cut(s)	179, 314, 656
NspI	RCATGY	1 cut(s)	179
PagI	TCATGA	1 cut(s)	652
PaqCI	CACCTGC	1 cut(s)	536
PceI	AGGCCT	1 cut(s)	342
PciI	ACATGT	1 cut(s)	175
PctI	GAATGC	2 cut(s)	89, 457
PfeI	GAWTC	2 cut(s)	63, 656
PflFI	GACNNNGTC	1 cut(s)	227
PflMI	CCANNNNNTGG	1 cut(s)	316
PkrI	GCNGC	4 cut(s)	184, 305, 403, 497
PscI	ACATGT	1 cut(s)	175
PsyI	GACNNNGTC	1 cut(s)	227
RseI	CAYNNNNRTG	2 cut(s)	443, 582
SaqAI	TTAA	3 cut(s)	38, 432, 471
SatI	GCNGC	4 cut(s)	183, 304, 402, 496
Sau3AI	GATC	3 cut(s)	28, 249, 616
SetI	ASST	8 cut(s)	77, 148, 187, 228, 305, 432, 550, 604
SfaNI	GCATC	3 cut(s)	388, 508, 532
SmiMI	CAYNNNNRTG	2 cut(s)	443, 582
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	6 cut(s)	205, 355, 411, 441, 472, 526
SseBI	AGGCCT	1 cut(s)	342
SspMI	CTAG	1 cut(s)	606
StuI	AGGCCT	1 cut(s)	342
StyI	CCWWGG	2 cut(s)	598, 627
TaaI	ACNGT	1 cut(s)	383
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	540
TasI	AATT	6 cut(s)	205, 355, 411, 441, 472, 526
TfiI	GAWTC	2 cut(s)	63, 656
Tru1I	TTAA	3 cut(s)	38, 432, 471
Tru9I	TTAA	3 cut(s)	38, 432, 471
TscAI	CASTG	5 cut(s)	91, 174, 226, 353, 589
TseI	GCWGC	4 cut(s)	182, 303, 401, 495
TspDTI	ATGAA	3 cut(s)	82, 464, 641
TspRI	CASTG	5 cut(s)	91, 174, 226, 353, 589
Tth111I	GACNNNGTC	1 cut(s)	227
Van91I	CCANNNNNTGG	1 cut(s)	316
Vha464I	CTTAAG	1 cut(s)	431
XapI	RAATTY	2 cut(s)	205, 355
XbaI	TCTAGA	1 cut(s)	605
XceI	RCATGY	1 cut(s)	179
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.