Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000217.1

Orthogroup ID

OG0006396

Physical Location & Seq

Genomic Coordinates Reverse (-)

31089 .. 32042

Gene Structure 954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000217.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atggattttcgaaaatgggatcagttggaccatgattgtttggtgaaaatctttgcaaaagtcggaagaggtgatacggagtcatttatggagtcaatgctcatggatgttccttttgtctgcaagtcgtggcataaagcaagccttgatcctaaatgttgggaacgtctcatttttcccatcatttctactagtctttataatactgatgttgaaactgaagactggacttgtgatccctttttaaaaagatttgtttctgaatatcgaatcaataagagcttctccatcactgcattcataaagtttatggtcaatcgtagcaaaggatgtgcgactgaaatcaggctacctgtgtgcgcttcagaagaagcactgaaacatgttgcagattcgtgtcctcgcctaaagaatttgtctttgcctgctgatgtagtctactataaatcaagaatgatccctgatatgattggcaagtggaaagatttggagaatttgttaatgggaagctgctaccatgatatggagaaaataatttcacaaataggccttcactgcaagaatttctatttcttacgtattcctgactgtctggtttgcgaagatgctgcatcggcaattgcaaagttgcctaatcttaagcacatattcatgcagaacacaaagattgaacgggttaattttgttaaattactgaagggctgcaaaaatcttgtgtcattggatgccagaaaatgtcttggtttcgatgcaggtgataaggaaatatcagaacttgcttctcatatcagtgatttcaaatgccaaggttctagagtttttgatcgccattctgaggagggaaaatatgtttggtttcatgattttgtgtatgatggatactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

294

Amino Acids

34.06

Weight (kDa)

7.07

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006396)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33270
prunus_persica	Prupe.1G157900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0265521 RchiOBHm_Chr6g0265531
rosa_laevigata	RLG00000014182
rosa_multiflora	Rmu_co8123530.1_g000001 Rmu_co8387705.1_g000001 Rmu_sc0000217.1_g000007 Rmu_sc0000217.1_g000009 Rmu_sc0006004.1_g000006
rosa_roxburghii	Rroxscaffold_175G00432420 Rroxscaffold_175G00432440 Rroxscaffold_7G00202620 Rroxscaffold_7G00202640
rosa_rugosa	Rorug06G0017300
rosa_samantha	Rh6AG139500 Rh6AG139700 Rh6BG139100 Rh6BG139200 Rh6BG139600 Rh6CG136500 Rh6CG136600 Rh6CG136700 Rh6DG122700 Rh6DG123000
rosa_wichuraiana	Rw6G012010 Rw6G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	201
AarI	CACCTGC	1 cut(s)	743
Acc36I	ACCTGC	1 cut(s)	743
AccB7I	CCANNNNNTGG	1 cut(s)	523
AccI	GTMKAC	1 cut(s)	438
AclWI	GGATC	4 cut(s)	27, 143, 230, 451
AcsI	RAATTY	3 cut(s)	412, 493, 562
AcuI	CTGAAG	3 cut(s)	240, 348, 716
AfiI	CCNNNNNNNGG	2 cut(s)	523, 835
AflII	CTTAAG	1 cut(s)	638
AflIII	ACRYGT	1 cut(s)	382
AgsI	TTSAA	3 cut(s)	215, 671, 799
AhlI	ACTAGT	1 cut(s)	191
AjuI	GAANNNNNNNTTGG	2 cut(s)	835, 867
AluBI	AGCT	2 cut(s)	282, 510
AluI	AGCT	2 cut(s)	282, 510
Alw26I	GTCTC	1 cut(s)	173
AlwI	GGATC	4 cut(s)	27, 143, 230, 451
AoxI	GGCC	1 cut(s)	547
ApeKI	GCWGC	3 cut(s)	510, 608, 702
ApoI	RAATTY	3 cut(s)	412, 493, 562
AspLEI	GCGC	1 cut(s)	362
AspS9I	GGNCC	1 cut(s)	28
AsuHPI	GGTGA	3 cut(s)	55, 83, 767
AsuII	TTCGAA	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	28
BarI	GAAGNNNNNNTAC	2 cut(s)	58, 90
BbsI	GAAGAC	1 cut(s)	228
BbvI	GCAGC	3 cut(s)	497, 595, 689
BccI	CCATC	3 cut(s)	188, 296, 869
BcgI	CGANNNNNNTGC	2 cut(s)	590, 624
BciVI	GTATCC	1 cut(s)	872
BcoDI	GTCTC	1 cut(s)	173
BcuI	ACTAGT	1 cut(s)	191
BfaI	CTAG	2 cut(s)	192, 813
BfrI	CTTAAG	1 cut(s)	638
BfuAI	ACCTGC	1 cut(s)	743
BfuI	GTATCC	1 cut(s)	872
BisI	GCNGC	3 cut(s)	511, 609, 703
BlsI	GCNGC	3 cut(s)	512, 610, 704
Bme18I	GGWCC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	28
BmsI	GCATC	4 cut(s)	595, 620, 715, 739
BpiI	GAAGAC	1 cut(s)	228
Bpu14I	TTCGAA	1 cut(s)	10
BsaAI	YACGTR	1 cut(s)	578
BsaJI	CCNNGG	1 cut(s)	805
BsaXI	ACNNNNNCTCC	2 cut(s)	482, 512
Bsc4I	CCNNNNNNNGG	2 cut(s)	523, 835
Bse1I	ACTGG	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	805
BseGI	GGATG	3 cut(s)	112, 335, 730
BseLI	CCNNNNNNNGG	2 cut(s)	523, 835
BseMII	CTCAG	1 cut(s)	825
BseNI	ACTGG	1 cut(s)	230
BseRI	GAGGAG	1 cut(s)	851
BseXI	GCAGC	3 cut(s)	497, 595, 689
BshFI	GGCC	1 cut(s)	549
BslI	CCNNNNNNNGG	2 cut(s)	523, 835
BsmAI	GTCTC	1 cut(s)	173
BsmBI	CGTCTC	1 cut(s)	173
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	549
Bsp119I	TTCGAA	1 cut(s)	10
Bsp143I	GATC	5 cut(s)	19, 148, 235, 456, 823
BspANI	GGCC	1 cut(s)	549
BspCNI	CTCAG	1 cut(s)	826
BspHI	TCATGA	1 cut(s)	859
BspMI	ACCTGC	1 cut(s)	743
BspPI	GGATC	4 cut(s)	27, 143, 230, 451
BspT104I	TTCGAA	1 cut(s)	10
BspTI	CTTAAG	1 cut(s)	638
BsrI	ACTGG	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	805
BssMI	GATC	5 cut(s)	19, 148, 235, 456, 823
BssT1I	CCWWGG	1 cut(s)	805
Bst4CI	ACNGT	1 cut(s)	590
Bst6I	CTCTTC	1 cut(s)	61
BstAFI	CTTAAG	1 cut(s)	638
BstBAI	YACGTR	1 cut(s)	578
BstBI	TTCGAA	1 cut(s)	10
BstC8I	GCNNGC	2 cut(s)	142, 426
BstDEI	CTNAG	1 cut(s)	834
BstF5I	GGATG	3 cut(s)	112, 335, 730
BstHHI	GCGC	1 cut(s)	362
BstKTI	GATC	5 cut(s)	22, 151, 238, 459, 826
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	5 cut(s)	19, 148, 235, 456, 823
BstMWI	GCNNNNNNNGC	2 cut(s)	555, 614
BstNSI	RCATGY	1 cut(s)	386
BstSNI	TACGTA	1 cut(s)	578
BstV1I	GCAGC	3 cut(s)	497, 595, 689
BstV2I	GAAGAC	1 cut(s)	228
BsuI	GTATCC	1 cut(s)	872
BsuRI	GGCC	1 cut(s)	549
BtsCI	GGATG	3 cut(s)	112, 335, 730
BtsI	GCAGTG	2 cut(s)	291, 553
BtsIMutI	CAGTG	4 cut(s)	291, 374, 553, 796
BveI	ACCTGC	1 cut(s)	743
Cac8I	GCNNGC	2 cut(s)	142, 426
CciI	TCATGA	1 cut(s)	859
CfoI	GCGC	1 cut(s)	362
Cfr13I	GGNCC	1 cut(s)	28
CviAII	CATG	6 cut(s)	32, 103, 383, 518, 652, 860
CviJI	RGCY	6 cut(s)	144, 282, 349, 510, 549, 702
CviKI_1	RGCY	6 cut(s)	144, 282, 349, 510, 549, 702
DdeI	CTNAG	1 cut(s)	834
DpnI	GATC	5 cut(s)	21, 150, 237, 458, 825
DpnII	GATC	5 cut(s)	19, 148, 235, 456, 823
DraI	TTTAAA	1 cut(s)	246
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Eco105I	TACGTA	1 cut(s)	578
Eco130I	CCWWGG	1 cut(s)	805
Eco147I	AGGCCT	1 cut(s)	549
Eco47I	GGWCC	1 cut(s)	28
Eco57I	CTGAAG	3 cut(s)	240, 348, 716
EcoT14I	CCWWGG	1 cut(s)	805
ErhI	CCWWGG	1 cut(s)	805
Esp3I	CGTCTC	1 cut(s)	173
FaeI	CATG	6 cut(s)	35, 106, 386, 521, 655, 863
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FatI	CATG	6 cut(s)	31, 102, 382, 517, 651, 859
FblI	GTMKAC	1 cut(s)	438
Fnu4HI	GCNGC	3 cut(s)	511, 609, 703
FokI	GGATG	3 cut(s)	119, 342, 737
Fsp4HI	GCNGC	3 cut(s)	511, 609, 703
FspBI	CTAG	2 cut(s)	192, 813
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	3 cut(s)	511, 609, 703
HaeIII	GGCC	1 cut(s)	549
HhaI	GCGC	1 cut(s)	362
Hin1II	CATG	6 cut(s)	35, 106, 386, 521, 655, 863
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HinfI	GANTC	4 cut(s)	80, 92, 270, 392
HphI	GGTGA	3 cut(s)	55, 83, 767
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	5 cut(s)	65, 262, 367, 772, 835
Hpy188III	TCNNGA	4 cut(s)	450, 584, 813, 860
Hpy8I	GTNNAC	1 cut(s)	439
HpyAV	CCTTC	2 cut(s)	560, 691
HpyCH4III	ACNGT	1 cut(s)	590
HpyCH4IV	ACGT	2 cut(s)	166, 577
HpyF10VI	GCNNNNNNNGC	2 cut(s)	555, 614
HpyF3I	CTNAG	1 cut(s)	834
HpySE526I	ACGT	2 cut(s)	166, 577
Hsp92II	CATG	6 cut(s)	35, 106, 386, 521, 655, 863
HspAI	GCGC	1 cut(s)	360
Kzo9I	GATC	5 cut(s)	19, 148, 235, 456, 823
LpnPI	CCDG	9 cut(s)	211, 331, 366, 438, 474, 578, 597, 738, 742
Lsp1109I	GCAGC	3 cut(s)	497, 595, 689
LweI	GCATC	4 cut(s)	595, 620, 715, 739
MaeI	CTAG	2 cut(s)	192, 813
MaeII	ACGT	2 cut(s)	166, 577
MalI	GATC	5 cut(s)	21, 150, 237, 458, 825
MboI	GATC	5 cut(s)	19, 148, 235, 456, 823
MboII	GAAGA	4 cut(s)	78, 233, 380, 614
MfeI	CAATTG	1 cut(s)	618
MluCI	AATT	7 cut(s)	412, 493, 534, 562, 618, 679, 689
MlyI	GAGTC	2 cut(s)	89, 101
MmeI	TCCRAC	2 cut(s)	6, 43
MnlI	CCTC	4 cut(s)	62, 411, 829, 832
MseI	TTAA	5 cut(s)	245, 500, 639, 678, 687
MslI	CAYNNNNRTG	2 cut(s)	650, 789
MspCI	CTTAAG	1 cut(s)	638
MunI	CAATTG	1 cut(s)	618
Mva1269I	GAATGC	1 cut(s)	296
MwoI	GCNNNNNNNGC	2 cut(s)	555, 614
NdeII	GATC	5 cut(s)	19, 148, 235, 456, 823
NlaIII	CATG	6 cut(s)	35, 106, 386, 521, 655, 863
NspI	RCATGY	1 cut(s)	386
NspV	TTCGAA	1 cut(s)	10
PagI	TCATGA	1 cut(s)	859
PaqCI	CACCTGC	1 cut(s)	743
PceI	AGGCCT	1 cut(s)	549
PciI	ACATGT	1 cut(s)	382
PctI	GAATGC	1 cut(s)	296
PfeI	GAWTC	2 cut(s)	270, 392
PflMI	CCANNNNNTGG	1 cut(s)	523
PkrI	GCNGC	3 cut(s)	512, 610, 704
PleI	GAGTC	2 cut(s)	88, 100
PpsI	GAGTC	2 cut(s)	88, 100
Ppu21I	YACGTR	1 cut(s)	578
PscI	ACATGT	1 cut(s)	382
PsiI	TTATAA	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	28
RseI	CAYNNNNRTG	2 cut(s)	650, 789
SaqAI	TTAA	5 cut(s)	245, 500, 639, 678, 687
SatI	GCNGC	3 cut(s)	511, 609, 703
Sau3AI	GATC	5 cut(s)	19, 148, 235, 456, 823
Sau96I	GGNCC	1 cut(s)	28
SchI	GAGTC	2 cut(s)	89, 101
SetI	ASST	8 cut(s)	73, 169, 284, 355, 512, 580, 757, 811
SfaNI	GCATC	4 cut(s)	595, 620, 715, 739
SfuI	TTCGAA	1 cut(s)	10
SinI	GGWCC	1 cut(s)	28
SmiMI	CAYNNNNRTG	2 cut(s)	650, 789
SmlI	CTYRAG	1 cut(s)	638
SmoI	CTYRAG	1 cut(s)	638
SnaBI	TACGTA	1 cut(s)	578
SpeI	ACTAGT	1 cut(s)	191
Sse9I	AATT	7 cut(s)	412, 493, 534, 562, 618, 679, 689
SseBI	AGGCCT	1 cut(s)	549
SspMI	CTAG	2 cut(s)	192, 813
StuI	AGGCCT	1 cut(s)	549
StyI	CCWWGG	1 cut(s)	805
TaaI	ACNGT	1 cut(s)	590
TaiI	ACGT	2 cut(s)	169, 580
TaqI	TCGA	3 cut(s)	10, 268, 747
TasI	AATT	7 cut(s)	412, 493, 534, 562, 618, 679, 689
TfiI	GAWTC	2 cut(s)	270, 392
Tru1I	TTAA	5 cut(s)	245, 500, 639, 678, 687
Tru9I	TTAA	5 cut(s)	245, 500, 639, 678, 687
TscAI	CASTG	4 cut(s)	298, 381, 560, 796
TseI	GCWGC	3 cut(s)	510, 608, 702
TspDTI	ATGAA	3 cut(s)	289, 640, 848
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	4 cut(s)	298, 381, 560, 796
Van91I	CCANNNNNTGG	1 cut(s)	523
Vha464I	CTTAAG	1 cut(s)	638
VpaK11BI	GGWCC	1 cut(s)	28
XapI	RAATTY	3 cut(s)	412, 493, 562
XbaI	TCTAGA	1 cut(s)	812
XceI	RCATGY	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	438
XspI	CTAG	2 cut(s)	192, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.