Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8123530.1

Orthogroup ID

OG0006396

Physical Location & Seq

Genomic Coordinates Forward (+)

76 .. 507

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8123530.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgatccctgatatgattggcaagtggaaagatttggagaatttgttaatgggaagctgctaccatgatatggagaaaataatttcacaaataggccttcactgcaagaatttctatttcttacgtattcctgactgtctggtttgcgaagatgctgcatcggcaattgcaaagttgcctaatcttaagcacatattcatgcagaacacaaagattgaacgggttaattttgttaaattactgaagggctgcaaaaatcttgtgtcattggatgccagaaaatgtcttggtttcgatgcaggtgataaggaaatatcagaacttgcttctcatatcagtgatttcaaatgccaaggttctagagtttttgatcgccattctgaggagggaaaatatgtttggtttcatgattttgtgtatgatggatactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

143

Amino Acids

16.5

Weight (kDa)

6.58

Isoelectric Point (pI)

29.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006396)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33270
prunus_persica	Prupe.1G157900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0265521 RchiOBHm_Chr6g0265531
rosa_laevigata	RLG00000014182
rosa_multiflora	Rmu_co8123530.1_g000001 Rmu_co8387705.1_g000001 Rmu_sc0000217.1_g000007 Rmu_sc0000217.1_g000009 Rmu_sc0006004.1_g000006
rosa_roxburghii	Rroxscaffold_175G00432420 Rroxscaffold_175G00432440 Rroxscaffold_7G00202620 Rroxscaffold_7G00202640
rosa_rugosa	Rorug06G0017300
rosa_samantha	Rh6AG139500 Rh6AG139700 Rh6BG139100 Rh6BG139200 Rh6BG139600 Rh6CG136500 Rh6CG136600 Rh6CG136700 Rh6DG122700 Rh6DG123000
rosa_wichuraiana	Rw6G012010 Rw6G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	290
Acc36I	ACCTGC	1 cut(s)	290
AccB7I	CCANNNNNTGG	1 cut(s)	70
AcsI	RAATTY	2 cut(s)	40, 109
AcuI	CTGAAG	1 cut(s)	263
AfiI	CCNNNNNNNGG	2 cut(s)	70, 382
AflII	CTTAAG	1 cut(s)	185
AgsI	TTSAA	2 cut(s)	218, 346
AjuI	GAANNNNNNNTTGG	2 cut(s)	382, 414
AluBI	AGCT	1 cut(s)	57
AluI	AGCT	1 cut(s)	57
AoxI	GGCC	1 cut(s)	94
ApeKI	GCWGC	3 cut(s)	57, 155, 249
ApoI	RAATTY	2 cut(s)	40, 109
AsuHPI	GGTGA	1 cut(s)	314
BbvI	GCAGC	3 cut(s)	44, 142, 236
BccI	CCATC	1 cut(s)	416
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BciVI	GTATCC	1 cut(s)	419
BfaI	CTAG	1 cut(s)	360
BfrI	CTTAAG	1 cut(s)	185
BfuAI	ACCTGC	1 cut(s)	290
BfuI	GTATCC	1 cut(s)	419
BisI	GCNGC	3 cut(s)	58, 156, 250
BlsI	GCNGC	3 cut(s)	59, 157, 251
BmsI	GCATC	4 cut(s)	142, 167, 262, 286
BsaAI	YACGTR	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	352
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 382
BseDI	CCNNGG	1 cut(s)	352
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	2 cut(s)	70, 382
BseMII	CTCAG	1 cut(s)	372
BseRI	GAGGAG	1 cut(s)	398
BseXI	GCAGC	3 cut(s)	44, 142, 236
BshFI	GGCC	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	70, 382
BsnI	GGCC	1 cut(s)	96
Bsp143I	GATC	2 cut(s)	3, 370
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	1 cut(s)	373
BspHI	TCATGA	1 cut(s)	406
BspMI	ACCTGC	1 cut(s)	290
BspTI	CTTAAG	1 cut(s)	185
BssECI	CCNNGG	1 cut(s)	352
BssMI	GATC	2 cut(s)	3, 370
BssT1I	CCWWGG	1 cut(s)	352
Bst4CI	ACNGT	1 cut(s)	137
BstAFI	CTTAAG	1 cut(s)	185
BstBAI	YACGTR	1 cut(s)	125
BstDEI	CTNAG	1 cut(s)	381
BstF5I	GGATG	1 cut(s)	277
BstKTI	GATC	2 cut(s)	6, 373
BstMBI	GATC	2 cut(s)	3, 370
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 161
BstSNI	TACGTA	1 cut(s)	125
BstV1I	GCAGC	3 cut(s)	44, 142, 236
BsuI	GTATCC	1 cut(s)	419
BsuRI	GGCC	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	277
BtsI	GCAGTG	1 cut(s)	100
BtsIMutI	CAGTG	2 cut(s)	100, 343
BveI	ACCTGC	1 cut(s)	290
CciI	TCATGA	1 cut(s)	406
CviAII	CATG	3 cut(s)	65, 199, 407
CviJI	RGCY	3 cut(s)	57, 96, 249
CviKI_1	RGCY	3 cut(s)	57, 96, 249
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	2 cut(s)	5, 372
DpnII	GATC	2 cut(s)	3, 370
Eco105I	TACGTA	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	352
Eco147I	AGGCCT	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	352
FaeI	CATG	3 cut(s)	68, 202, 410
FaiI	YATR	9 cut(s)	14, 66, 71, 194, 200, 333, 396, 408, 420
FatI	CATG	3 cut(s)	64, 198, 406
Fnu4HI	GCNGC	3 cut(s)	58, 156, 250
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	3 cut(s)	58, 156, 250
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	3 cut(s)	58, 156, 250
HaeIII	GGCC	1 cut(s)	96
Hin1II	CATG	3 cut(s)	68, 202, 410
HphI	GGTGA	1 cut(s)	314
Hpy188I	TCNGA	2 cut(s)	319, 382
Hpy188III	TCNNGA	3 cut(s)	131, 360, 407
HpyAV	CCTTC	2 cut(s)	107, 238
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	6 cut(s)	105, 158, 170, 202, 252, 299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 161
HpyF3I	CTNAG	1 cut(s)	381
HpySE526I	ACGT	1 cut(s)	124
Hsp92II	CATG	3 cut(s)	68, 202, 410
Kzo9I	GATC	2 cut(s)	3, 370
LpnPI	CCDG	5 cut(s)	21, 125, 144, 285, 289
Lsp1109I	GCAGC	3 cut(s)	44, 142, 236
LweI	GCATC	4 cut(s)	142, 167, 262, 286
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	1 cut(s)	124
MalI	GATC	2 cut(s)	5, 372
MboI	GATC	2 cut(s)	3, 370
MboII	GAAGA	1 cut(s)	161
MfeI	CAATTG	1 cut(s)	165
MluCI	AATT	6 cut(s)	40, 81, 109, 165, 226, 236
MnlI	CCTC	2 cut(s)	376, 379
MseI	TTAA	4 cut(s)	47, 186, 225, 234
MslI	CAYNNNNRTG	2 cut(s)	197, 336
MspCI	CTTAAG	1 cut(s)	185
MunI	CAATTG	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	102, 161
NdeII	GATC	2 cut(s)	3, 370
NlaIII	CATG	3 cut(s)	68, 202, 410
PagI	TCATGA	1 cut(s)	406
PaqCI	CACCTGC	1 cut(s)	290
PceI	AGGCCT	1 cut(s)	96
PflMI	CCANNNNNTGG	1 cut(s)	70
PkrI	GCNGC	3 cut(s)	59, 157, 251
Ppu21I	YACGTR	1 cut(s)	125
RseI	CAYNNNNRTG	2 cut(s)	197, 336
SaqAI	TTAA	4 cut(s)	47, 186, 225, 234
SatI	GCNGC	3 cut(s)	58, 156, 250
Sau3AI	GATC	2 cut(s)	3, 370
SetI	ASST	4 cut(s)	59, 127, 304, 358
SfaNI	GCATC	4 cut(s)	142, 167, 262, 286
SmiMI	CAYNNNNRTG	2 cut(s)	197, 336
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SnaBI	TACGTA	1 cut(s)	125
Sse9I	AATT	6 cut(s)	40, 81, 109, 165, 226, 236
SseBI	AGGCCT	1 cut(s)	96
SspMI	CTAG	1 cut(s)	360
StuI	AGGCCT	1 cut(s)	96
StyI	CCWWGG	1 cut(s)	352
TaaI	ACNGT	1 cut(s)	137
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	1 cut(s)	294
TasI	AATT	6 cut(s)	40, 81, 109, 165, 226, 236
Tru1I	TTAA	4 cut(s)	47, 186, 225, 234
Tru9I	TTAA	4 cut(s)	47, 186, 225, 234
TscAI	CASTG	2 cut(s)	107, 343
TseI	GCWGC	3 cut(s)	57, 155, 249
TspDTI	ATGAA	2 cut(s)	187, 395
TspRI	CASTG	2 cut(s)	107, 343
Van91I	CCANNNNNTGG	1 cut(s)	70
Vha464I	CTTAAG	1 cut(s)	185
XapI	RAATTY	2 cut(s)	40, 109
XbaI	TCTAGA	1 cut(s)	359
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.