Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000175

Orthogroup ID

OG0006396

Physical Location & Seq

Genomic Coordinates Forward (+)

1192725 .. 1197897

Gene Structure 5173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_175G00432440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCTCGAGAAGGTATTTTGGTTGGGCTGCAACAGTTCCATAGAGGAACTTCTGCAGGGGCGTGACATCTCCATCACTGCATTCATAAAGTTTATGGTCAATCGTAGCAAAGGATGTGCTACTGAAATCAGGCTACCTGTGTGCGCTTCAGAAGAAGCACTGAAACATGTTGCAGCTTCGTGTCCTCGCCTAAAGAATTTGTCTTTGCCTGCTGATGTAGTCTACTATAAATCAAGAATGATCCCTGATATGATTGGCAAGTGGAAAGATTTGGAGAATTTGTTAATGGGAAGCTGCTACCATGATATGGAGAAAATCATTTCACAAATAGGCCTTCACTGCAAGAATTTCTATTTCTTACGTATTCCTGACTGTCTGGTTTGCGAAGATGCTGCATCGGCAATTGCAAAGTTGCCTAATCTTAAGCATATATTCATGCAGAACACAAAGTTCGAACGGGTTAATTTTGTTAAATTACTGAAGGGCTGCAAAAATCTTGTGTCATTGGATGCCAGAAAATGTCTTGGTTTCGATGCAGGTGATAAGGAAATATCAGAACTTGCTTCTCATATCAGTGATTTCAAATGCCAAGGTTCTAGAGTTTTTGATCGCCATTCTGAGGAGGGAAAATATGTTTGGTTTCATGATTTTGTGTATGATGGATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

222

Amino Acids

25.36

Weight (kDa)

7.96

Isoelectric Point (pI)

37.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006396)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33270
prunus_persica	Prupe.1G157900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0265521 RchiOBHm_Chr6g0265531
rosa_laevigata	RLG00000014182
rosa_multiflora	Rmu_co8123530.1_g000001 Rmu_co8387705.1_g000001 Rmu_sc0000217.1_g000007 Rmu_sc0000217.1_g000009 Rmu_sc0006004.1_g000006
rosa_roxburghii	Rroxscaffold_175G00432420 Rroxscaffold_175G00432440 Rroxscaffold_7G00202620 Rroxscaffold_7G00202640
rosa_rugosa	Rorug06G0017300
rosa_samantha	Rh6AG139500 Rh6AG139700 Rh6BG139100 Rh6BG139200 Rh6BG139600 Rh6CG136500 Rh6CG136600 Rh6CG136700 Rh6DG122700 Rh6DG123000
rosa_wichuraiana	Rw6G012010 Rw6G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	527
Acc36I	ACCTGC	1 cut(s)	527
AccB7I	CCANNNNNTGG	1 cut(s)	307
AccI	GTMKAC	1 cut(s)	222
AclWI	GGATC	1 cut(s)	235
AcsI	RAATTY	3 cut(s)	196, 277, 346
AcuI	CTGAAG	2 cut(s)	132, 500
AfiI	CCNNNNNNNGG	2 cut(s)	307, 619
AflII	CTTAAG	1 cut(s)	422
AflIII	ACRYGT	1 cut(s)	166
AgsI	TTSAA	1 cut(s)	583
AjuI	GAANNNNNNNTTGG	2 cut(s)	619, 651
AluBI	AGCT	2 cut(s)	176, 294
AluI	AGCT	2 cut(s)	176, 294
AlwI	GGATC	1 cut(s)	235
Ama87I	CYCGRG	1 cut(s)	5
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	5 cut(s)	27, 173, 294, 392, 486
ApoI	RAATTY	3 cut(s)	196, 277, 346
AspLEI	GCGC	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	551
AsuII	TTCGAA	1 cut(s)	453
AvaI	CYCGRG	1 cut(s)	5
BbvI	GCAGC	5 cut(s)	14, 185, 281, 379, 473
BccI	CCATC	2 cut(s)	80, 653
BcgI	CGANNNNNNTGC	2 cut(s)	374, 408
BciVI	GTATCC	1 cut(s)	656
BfaI	CTAG	1 cut(s)	597
BfmI	CTRYAG	1 cut(s)	53
BfrI	CTTAAG	1 cut(s)	422
BfuAI	ACCTGC	1 cut(s)	527
BfuI	GTATCC	1 cut(s)	656
BisI	GCNGC	5 cut(s)	28, 174, 295, 393, 487
BlsI	GCNGC	5 cut(s)	29, 175, 296, 394, 488
BmeT110I	CYCGRG	1 cut(s)	5
BmsI	GCATC	4 cut(s)	379, 404, 499, 523
Bpu14I	TTCGAA	1 cut(s)	453
BsaAI	YACGTR	1 cut(s)	362
BsaJI	CCNNGG	1 cut(s)	589
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bsc4I	CCNNNNNNNGG	2 cut(s)	307, 619
BseDI	CCNNGG	1 cut(s)	589
BseGI	GGATG	2 cut(s)	119, 514
BseLI	CCNNNNNNNGG	2 cut(s)	307, 619
BseMII	CTCAG	1 cut(s)	609
BseRI	GAGGAG	1 cut(s)	635
BseXI	GCAGC	5 cut(s)	14, 185, 281, 379, 473
BshFI	GGCC	1 cut(s)	333
BsiHKCI	CYCGRG	1 cut(s)	5
BslI	CCNNNNNNNGG	2 cut(s)	307, 619
BsmI	GAATGC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	333
BsoBI	CYCGRG	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	453
Bsp143I	GATC	2 cut(s)	240, 607
BspANI	GGCC	1 cut(s)	333
BspCNI	CTCAG	1 cut(s)	610
BspHI	TCATGA	1 cut(s)	643
BspMAI	CTGCAG	1 cut(s)	57
BspMI	ACCTGC	1 cut(s)	527
BspPI	GGATC	1 cut(s)	235
BspT104I	TTCGAA	1 cut(s)	453
BspTI	CTTAAG	1 cut(s)	422
BssECI	CCNNGG	1 cut(s)	589
BssMI	GATC	2 cut(s)	240, 607
BssT1I	CCWWGG	1 cut(s)	589
Bst4CI	ACNGT	2 cut(s)	35, 374
BstAFI	CTTAAG	1 cut(s)	422
BstBAI	YACGTR	1 cut(s)	362
BstBI	TTCGAA	1 cut(s)	453
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	1 cut(s)	618
BstF5I	GGATG	2 cut(s)	119, 514
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	2 cut(s)	243, 610
BstMBI	GATC	2 cut(s)	240, 607
BstMWI	GCNNNNNNNGC	2 cut(s)	339, 398
BstNSI	RCATGY	1 cut(s)	170
BstSFI	CTRYAG	1 cut(s)	53
BstSNI	TACGTA	1 cut(s)	362
BstV1I	GCAGC	5 cut(s)	14, 185, 281, 379, 473
BsuI	GTATCC	1 cut(s)	656
BsuRI	GGCC	1 cut(s)	333
BtsCI	GGATG	2 cut(s)	119, 514
BtsI	GCAGTG	2 cut(s)	75, 337
BtsIMutI	CAGTG	4 cut(s)	75, 158, 337, 580
BveI	ACCTGC	1 cut(s)	527
Cac8I	GCNNGC	1 cut(s)	210
CciI	TCATGA	1 cut(s)	643
CfoI	GCGC	1 cut(s)	146
CviAII	CATG	4 cut(s)	167, 302, 436, 644
CviJI	RGCY	6 cut(s)	27, 133, 176, 294, 333, 486
CviKI_1	RGCY	6 cut(s)	27, 133, 176, 294, 333, 486
DdeI	CTNAG	1 cut(s)	618
DpnI	GATC	2 cut(s)	242, 609
DpnII	GATC	2 cut(s)	240, 607
Eco105I	TACGTA	1 cut(s)	362
Eco130I	CCWWGG	1 cut(s)	589
Eco147I	AGGCCT	1 cut(s)	333
Eco57I	CTGAAG	2 cut(s)	132, 500
Eco88I	CYCGRG	1 cut(s)	5
EcoT14I	CCWWGG	1 cut(s)	589
ErhI	CCWWGG	1 cut(s)	589
FaeI	CATG	4 cut(s)	170, 305, 439, 647
FatI	CATG	4 cut(s)	166, 301, 435, 643
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	5 cut(s)	28, 174, 295, 393, 487
FokI	GGATG	2 cut(s)	126, 521
Fsp4HI	GCNGC	5 cut(s)	28, 174, 295, 393, 487
FspBI	CTAG	1 cut(s)	597
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	5 cut(s)	28, 174, 295, 393, 487
HaeIII	GGCC	1 cut(s)	333
HhaI	GCGC	1 cut(s)	146
Hin1II	CATG	4 cut(s)	170, 305, 439, 647
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HphI	GGTGA	1 cut(s)	551
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	3 cut(s)	151, 556, 619
Hpy188III	TCNNGA	5 cut(s)	7, 234, 368, 597, 644
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	3 cut(s)	4, 344, 475
HpyCH4III	ACNGT	2 cut(s)	35, 374
HpyCH4IV	ACGT	1 cut(s)	361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	339, 398
HpyF3I	CTNAG	1 cut(s)	618
HpySE526I	ACGT	1 cut(s)	361
Hsp92II	CATG	4 cut(s)	170, 305, 439, 647
HspAI	GCGC	1 cut(s)	144
Kzo9I	GATC	2 cut(s)	240, 607
LpnPI	CCDG	9 cut(s)	41, 115, 150, 222, 258, 362, 381, 522, 526
Lsp1109I	GCAGC	5 cut(s)	14, 185, 281, 379, 473
LweI	GCATC	4 cut(s)	379, 404, 499, 523
MaeI	CTAG	1 cut(s)	597
MaeII	ACGT	1 cut(s)	361
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	2 cut(s)	242, 609
MboI	GATC	2 cut(s)	240, 607
MboII	GAAGA	2 cut(s)	164, 398
MfeI	CAATTG	1 cut(s)	402
MluCI	AATT	6 cut(s)	196, 277, 346, 402, 463, 473
MnlI	CCTC	4 cut(s)	37, 195, 613, 616
MseI	TTAA	4 cut(s)	284, 423, 462, 471
MslI	CAYNNNNRTG	1 cut(s)	573
MspCI	CTTAAG	1 cut(s)	422
MunI	CAATTG	1 cut(s)	402
Mva1269I	GAATGC	1 cut(s)	80
MwoI	GCNNNNNNNGC	2 cut(s)	339, 398
NdeII	GATC	2 cut(s)	240, 607
NlaIII	CATG	4 cut(s)	170, 305, 439, 647
NmuCI	GTSAC	1 cut(s)	62
NspI	RCATGY	1 cut(s)	170
NspV	TTCGAA	1 cut(s)	453
PaeR7I	CTCGAG	1 cut(s)	5
PagI	TCATGA	1 cut(s)	643
PaqCI	CACCTGC	1 cut(s)	527
PceI	AGGCCT	1 cut(s)	333
PciI	ACATGT	1 cut(s)	166
PctI	GAATGC	1 cut(s)	80
PflMI	CCANNNNNTGG	1 cut(s)	307
PkrI	GCNGC	5 cut(s)	29, 175, 296, 394, 488
Ppu21I	YACGTR	1 cut(s)	362
PscI	ACATGT	1 cut(s)	166
PstI	CTGCAG	1 cut(s)	57
RseI	CAYNNNNRTG	1 cut(s)	573
SaqAI	TTAA	4 cut(s)	284, 423, 462, 471
SatI	GCNGC	5 cut(s)	28, 174, 295, 393, 487
Sau3AI	GATC	2 cut(s)	240, 607
SetI	ASST	7 cut(s)	15, 139, 178, 296, 364, 541, 595
SfaNI	GCATC	4 cut(s)	379, 404, 499, 523
SfcI	CTRYAG	1 cut(s)	53
Sfr274I	CTCGAG	1 cut(s)	5
SfuI	TTCGAA	1 cut(s)	453
SlaI	CTCGAG	1 cut(s)	5
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	2 cut(s)	5, 422
SmoI	CTYRAG	2 cut(s)	5, 422
SnaBI	TACGTA	1 cut(s)	362
Sse9I	AATT	6 cut(s)	196, 277, 346, 402, 463, 473
SseBI	AGGCCT	1 cut(s)	333
SspMI	CTAG	1 cut(s)	597
StuI	AGGCCT	1 cut(s)	333
StyI	CCWWGG	1 cut(s)	589
TaaI	ACNGT	2 cut(s)	35, 374
TaiI	ACGT	1 cut(s)	364
TaqI	TCGA	3 cut(s)	6, 453, 531
TasI	AATT	6 cut(s)	196, 277, 346, 402, 463, 473
Tru1I	TTAA	4 cut(s)	284, 423, 462, 471
Tru9I	TTAA	4 cut(s)	284, 423, 462, 471
TscAI	CASTG	4 cut(s)	82, 165, 344, 580
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	5 cut(s)	27, 173, 294, 392, 486
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	3 cut(s)	73, 424, 632
TspRI	CASTG	4 cut(s)	82, 165, 344, 580
Van91I	CCANNNNNTGG	1 cut(s)	307
Vha464I	CTTAAG	1 cut(s)	422
XapI	RAATTY	3 cut(s)	196, 277, 346
XbaI	TCTAGA	1 cut(s)	596
XceI	RCATGY	1 cut(s)	170
XhoI	CTCGAG	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	222
XspI	CTAG	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.