Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006396

Physical Location & Seq

Genomic Coordinates Reverse (-)

48827620 .. 48828941

Gene Structure 1322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014182

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCTCGAGAAGGCATTTTGGACGGGGTGCAACAGTTCCATAGAGGAACTTCTGAAGTTCATGGATCAGCGAAAATGGGATCAGTTGGACTATGTTTGTTTGGTGAATATCTTTGGAAAAGTCGGAAGAGGTGGTATGGCGTCACTGCTCATGGATGTTCCTTTTGTCTGCAAGTCATGGCATAAAGCAAGCCTTGATCCTAAATGTTGGGAAAGTCTCATTTTTCCCATCATTTTCACTAGTCTTTATAATTCTGATGTTGAAACTGAAGACTGGACTTTTGATCCCTTTTTAAAAAGATTTGTTTTTGAATACCGAATCAACAAGAGTTTCTCCATCACTGCATTCATAAAGTTTATGGTCAATCGTAGCAAAGGATGTGCTACTGAAATCAGGCTACCTGTGTGTGCTTCACAAGAAGCACTGAAACATGTTGCAGCTTCGTGTCCTTGCCTAAAGAATTTGACTTTGCCCACTGATGTAGTCTACTATAAATCCAGAATGATCCCTGATATGATTGGCAAGTGGAGAGATTTGGAGTATTTGCTAATGGGAAGCTGCTACCATGATATGGAGAAAATCATTTCCCAAATAGGCCTTCACTGCAAGAATTTCTATTATTTAGATATTCCTGACTGCCTGGTTCGCAAAGATGCTGCATTGGCAATTGCAAAGTTGCCTAATCTTAAGCACATAATTATGATGAATGCAAAGATCAAACGGGTTAATTTTGTTAGATTACTGAAGGGCTGCCAAAAACTTGTGTCATTGGATGCCAGAAATTGTCTTGGTTTCGATGCAGGTGATAAGGAAATATCAAAACTTGCTTCTCATATCAGTGATTTCAAATGCCAAGGTTCTAGATTTTTTGATCGCCATTCCAAGGAGGGAAAATATGTTTGGTTTCATGATTCGGTCTATGATGGACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

311

Amino Acids

35.85

Weight (kDa)

8.82

Isoelectric Point (pI)

36.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006396)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33270
prunus_persica	Prupe.1G157900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0265521 RchiOBHm_Chr6g0265531
rosa_laevigata	RLG00000014182
rosa_multiflora	Rmu_co8123530.1_g000001 Rmu_co8387705.1_g000001 Rmu_sc0000217.1_g000007 Rmu_sc0000217.1_g000009 Rmu_sc0006004.1_g000006
rosa_roxburghii	Rroxscaffold_175G00432420 Rroxscaffold_175G00432440 Rroxscaffold_7G00202620 Rroxscaffold_7G00202640
rosa_rugosa	Rorug06G0017300
rosa_samantha	Rh6AG139500 Rh6AG139700 Rh6BG139100 Rh6BG139200 Rh6BG139600 Rh6CG136500 Rh6CG136600 Rh6CG136700 Rh6DG122700 Rh6DG123000
rosa_wichuraiana	Rw6G012010 Rw6G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	249
AarI	CACCTGC	1 cut(s)	791
Acc36I	ACCTGC	1 cut(s)	791
AccB7I	CCANNNNNTGG	1 cut(s)	571
AccI	GTMKAC	1 cut(s)	486
AclWI	GGATC	5 cut(s)	72, 87, 191, 278, 499
AcsI	RAATTY	2 cut(s)	460, 610
AcuI	CTGAAG	3 cut(s)	74, 288, 764
AcyI	GRCGYC	1 cut(s)	140
AfiI	CCNNNNNNNGG	2 cut(s)	571, 883
AflII	CTTAAG	1 cut(s)	686
AflIII	ACRYGT	1 cut(s)	430
AgsI	TTSAA	3 cut(s)	263, 311, 847
AhlI	ACTAGT	1 cut(s)	239
AjnI	CCWGG	1 cut(s)	639
AjuI	GAANNNNNNNTTGG	4 cut(s)	582, 614, 883, 915
AluBI	AGCT	2 cut(s)	440, 558
AluI	AGCT	2 cut(s)	440, 558
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	5 cut(s)	72, 87, 191, 278, 499
Ama87I	CYCGRG	1 cut(s)	5
AoxI	GGCC	1 cut(s)	595
ApeKI	GCWGC	4 cut(s)	437, 558, 656, 750
ApoI	RAATTY	2 cut(s)	460, 610
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
AsuHPI	GGTGA	2 cut(s)	115, 815
AvaI	CYCGRG	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	276
BbvI	GCAGC	4 cut(s)	449, 545, 643, 737
BccI	CCATC	3 cut(s)	236, 344, 917
BciT130I	CCWGG	1 cut(s)	641
BcoDI	GTCTC	1 cut(s)	221
BcuI	ACTAGT	1 cut(s)	239
BfaI	CTAG	2 cut(s)	240, 861
BfrI	CTTAAG	1 cut(s)	686
BfuAI	ACCTGC	1 cut(s)	791
BisI	GCNGC	4 cut(s)	438, 559, 657, 751
BlsI	GCNGC	4 cut(s)	439, 560, 658, 752
Bme1390I	CCNGG	1 cut(s)	641
BmeT110I	CYCGRG	1 cut(s)	5
BmrFI	CCNGG	1 cut(s)	641
BmsI	GCATC	3 cut(s)	643, 763, 787
BpiI	GAAGAC	1 cut(s)	276
BsaHI	GRCGYC	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	853, 882
Bsc4I	CCNNNNNNNGG	2 cut(s)	571, 883
Bse1I	ACTGG	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	641
BseDI	CCNNGG	2 cut(s)	853, 882
BseGI	GGATG	3 cut(s)	160, 383, 778
BseLI	CCNNNNNNNGG	2 cut(s)	571, 883
BseNI	ACTGG	1 cut(s)	278
BseXI	GCAGC	4 cut(s)	449, 545, 643, 737
BshFI	GGCC	1 cut(s)	597
BsiHKCI	CYCGRG	1 cut(s)	5
BslI	CCNNNNNNNGG	2 cut(s)	571, 883
BsmAI	GTCTC	1 cut(s)	221
BsmI	GAATGC	2 cut(s)	344, 712
BsnI	GGCC	1 cut(s)	597
BsoBI	CYCGRG	1 cut(s)	5
Bsp143I	GATC	7 cut(s)	64, 79, 196, 283, 504, 714, 871
BspANI	GGCC	1 cut(s)	597
BspHI	TCATGA	1 cut(s)	907
BspMI	ACCTGC	1 cut(s)	791
BspPI	GGATC	5 cut(s)	72, 87, 191, 278, 499
BspTI	CTTAAG	1 cut(s)	686
BsrI	ACTGG	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	853, 882
BssMI	GATC	7 cut(s)	64, 79, 196, 283, 504, 714, 871
BssNI	GRCGYC	1 cut(s)	140
BssT1I	CCWWGG	2 cut(s)	853, 882
Bst2UI	CCWGG	1 cut(s)	641
Bst4CI	ACNGT	1 cut(s)	35
Bst6I	CTCTTC	1 cut(s)	121
BstACI	GRCGYC	1 cut(s)	140
BstAFI	CTTAAG	1 cut(s)	686
BstC8I	GCNNGC	1 cut(s)	190
BstF5I	GGATG	3 cut(s)	160, 383, 778
BstKTI	GATC	7 cut(s)	67, 82, 199, 286, 507, 717, 874
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	7 cut(s)	64, 79, 196, 283, 504, 714, 871
BstMWI	GCNNNNNNNGC	3 cut(s)	603, 645, 662
BstNI	CCWGG	1 cut(s)	641
BstNSI	RCATGY	1 cut(s)	434
BstSCI	CCNGG	1 cut(s)	639
BstV1I	GCAGC	4 cut(s)	449, 545, 643, 737
BstV2I	GAAGAC	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	597
BtsCI	GGATG	3 cut(s)	160, 383, 778
BtsI	GCAGTG	3 cut(s)	143, 339, 601
BtsIMutI	CAGTG	6 cut(s)	143, 339, 422, 474, 601, 844
BveI	ACCTGC	1 cut(s)	791
Cac8I	GCNNGC	1 cut(s)	190
CciI	TCATGA	1 cut(s)	907
CseI	GACGC	1 cut(s)	129
CviAII	CATG	6 cut(s)	61, 151, 177, 431, 566, 908
CviJI	RGCY	6 cut(s)	192, 397, 440, 558, 597, 750
CviKI_1	RGCY	6 cut(s)	192, 397, 440, 558, 597, 750
DpnI	GATC	7 cut(s)	66, 81, 198, 285, 506, 716, 873
DpnII	GATC	7 cut(s)	64, 79, 196, 283, 504, 714, 871
DraI	TTTAAA	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
Eco130I	CCWWGG	2 cut(s)	853, 882
Eco147I	AGGCCT	1 cut(s)	597
Eco57I	CTGAAG	3 cut(s)	74, 288, 764
Eco88I	CYCGRG	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	639
EcoT14I	CCWWGG	2 cut(s)	853, 882
ErhI	CCWWGG	2 cut(s)	853, 882
FaeI	CATG	6 cut(s)	64, 154, 180, 434, 569, 911
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FatI	CATG	6 cut(s)	60, 150, 176, 430, 565, 907
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	4 cut(s)	438, 559, 657, 751
FokI	GGATG	3 cut(s)	167, 390, 785
Fsp4HI	GCNGC	4 cut(s)	438, 559, 657, 751
FspBI	CTAG	2 cut(s)	240, 861
GluI	GCNGC	4 cut(s)	438, 559, 657, 751
HaeIII	GGCC	1 cut(s)	597
HgaI	GACGC	1 cut(s)	129
Hin1I	GRCGYC	1 cut(s)	140
Hin1II	CATG	6 cut(s)	64, 154, 180, 434, 569, 911
HinfI	GANTC	2 cut(s)	318, 911
HphI	GGTGA	2 cut(s)	115, 815
Hpy166II	GTNNAC	1 cut(s)	487
Hpy188I	TCNGA	3 cut(s)	54, 125, 256
Hpy188III	TCNNGA	5 cut(s)	7, 498, 632, 861, 908
Hpy8I	GTNNAC	1 cut(s)	487
HpyAV	CCTTC	3 cut(s)	4, 608, 739
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4V	TGCA	9 cut(s)	30, 171, 344, 437, 606, 659, 671, 710, 800
HpyF10VI	GCNNNNNNNGC	3 cut(s)	603, 645, 662
Hsp92I	GRCGYC	1 cut(s)	140
Hsp92II	CATG	6 cut(s)	64, 154, 180, 434, 569, 911
Kzo9I	GATC	7 cut(s)	64, 79, 196, 283, 504, 714, 871
Lsp1109I	GCAGC	4 cut(s)	449, 545, 643, 737
LweI	GCATC	3 cut(s)	643, 763, 787
MaeI	CTAG	2 cut(s)	240, 861
MaeIII	GTNAC	1 cut(s)	141
MalI	GATC	7 cut(s)	66, 81, 198, 285, 506, 716, 873
MboI	GATC	7 cut(s)	64, 79, 196, 283, 504, 714, 871
MboII	GAAGA	2 cut(s)	138, 281
MfeI	CAATTG	1 cut(s)	666
MluCI	AATT	7 cut(s)	250, 460, 610, 666, 696, 727, 781
MmeI	TCCRAC	2 cut(s)	66, 103
MnlI	CCTC	3 cut(s)	37, 122, 880
MseI	TTAA	3 cut(s)	293, 687, 726
MslI	CAYNNNNRTG	2 cut(s)	698, 837
MspCI	CTTAAG	1 cut(s)	686
MspR9I	CCNGG	1 cut(s)	641
MunI	CAATTG	1 cut(s)	666
Mva1269I	GAATGC	2 cut(s)	344, 712
MvaI	CCWGG	1 cut(s)	641
MwoI	GCNNNNNNNGC	3 cut(s)	603, 645, 662
NdeII	GATC	7 cut(s)	64, 79, 196, 283, 504, 714, 871
NlaIII	CATG	6 cut(s)	64, 154, 180, 434, 569, 911
NmuCI	GTSAC	1 cut(s)	141
NspI	RCATGY	1 cut(s)	434
PaeR7I	CTCGAG	1 cut(s)	5
PagI	TCATGA	1 cut(s)	907
PaqCI	CACCTGC	1 cut(s)	791
PceI	AGGCCT	1 cut(s)	597
PciI	ACATGT	1 cut(s)	430
PctI	GAATGC	2 cut(s)	344, 712
PfeI	GAWTC	2 cut(s)	318, 911
PflMI	CCANNNNNTGG	1 cut(s)	571
PkrI	GCNGC	4 cut(s)	439, 560, 658, 752
PscI	ACATGT	1 cut(s)	430
PsiI	TTATAA	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	639
PspGI	CCWGG	1 cut(s)	639
RseI	CAYNNNNRTG	2 cut(s)	698, 837
SaqAI	TTAA	3 cut(s)	293, 687, 726
SatI	GCNGC	4 cut(s)	438, 559, 657, 751
Sau3AI	GATC	7 cut(s)	64, 79, 196, 283, 504, 714, 871
ScrFI	CCNGG	1 cut(s)	641
SetI	ASST	6 cut(s)	133, 403, 442, 560, 805, 859
SfaNI	GCATC	3 cut(s)	643, 763, 787
Sfr274I	CTCGAG	1 cut(s)	5
SlaI	CTCGAG	1 cut(s)	5
SmiMI	CAYNNNNRTG	2 cut(s)	698, 837
SmlI	CTYRAG	2 cut(s)	5, 686
SmoI	CTYRAG	2 cut(s)	5, 686
SpeI	ACTAGT	1 cut(s)	239
Sse9I	AATT	7 cut(s)	250, 460, 610, 666, 696, 727, 781
SseBI	AGGCCT	1 cut(s)	597
SspMI	CTAG	2 cut(s)	240, 861
StuI	AGGCCT	1 cut(s)	597
StyD4I	CCNGG	1 cut(s)	639
StyI	CCWWGG	2 cut(s)	853, 882
TaaI	ACNGT	1 cut(s)	35
TaqI	TCGA	2 cut(s)	6, 795
TaqII	GACCGA	1 cut(s)	904
TasI	AATT	7 cut(s)	250, 460, 610, 666, 696, 727, 781
TfiI	GAWTC	2 cut(s)	318, 911
Tru1I	TTAA	3 cut(s)	293, 687, 726
Tru9I	TTAA	3 cut(s)	293, 687, 726
TscAI	CASTG	6 cut(s)	150, 346, 429, 481, 608, 844
TseFI	GTSAC	1 cut(s)	141
TseI	GCWGC	4 cut(s)	437, 558, 656, 750
Tsp45I	GTSAC	1 cut(s)	141
TspDTI	ATGAA	4 cut(s)	49, 337, 719, 896
TspRI	CASTG	6 cut(s)	150, 346, 429, 481, 608, 844
Van91I	CCANNNNNTGG	1 cut(s)	571
Vha464I	CTTAAG	1 cut(s)	686
XapI	RAATTY	2 cut(s)	460, 610
XbaI	TCTAGA	1 cut(s)	860
XceI	RCATGY	1 cut(s)	434
XhoI	CTCGAG	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	486
XspI	CTAG	2 cut(s)	240, 861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.