Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006396

Physical Location & Seq

Genomic Coordinates Forward (+)

22189022 .. 22190399

Gene Structure 1378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG139200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGCTCGAGAAGGTATTTTGGTTGGGCTGCAACAATTCCATAGAGGAACTTCTGCAGTTCATGGATTTTCGAAAATGGGATCAGTTGGACTATGATTGTTTGGTGAATATCTTTGGAAAAGTCGGAAGAGGTGATACGGAGACATTTATGGAGTCAATGCTCATGGATGTTCCTTTTGTCTGCAAGTCGTGGCATAAAGCAAGCCTTGATCCTAAATGTTGGGAAAGTCTCATTTTTCCCATCATTTCTACTAGTCTTTATAATACTGATGTTGAAACTGAAGACTGGACTTGTGATCCCTTTTTAAAAAGATTTGTTTCTGAATATCGAATCAATAAGAGCTTCTCCATCACTGCATTCATAAAGTTTATGGTTAATCGTAGCAAAGGATGTGCTACTGAAATCAGGCTACCTGTGTGCGCTTCAGAAGAAGCACTGAAACATGTTGCAGCTTCGTGTCCTCGCCTAAAGCTTTTGTCTTTGCCTGCTGATGTAGTCTACTATAAATCAAGAATGATCCCTGATATGATTGGCAAGTGGAAAGATTTGGAGAATTTGTTAATGGGAAACTGCTACCATGATATGGAGAAAATCATTTCACAAATAGGCCTTCTCTGCAAGAATTTCTATTTTTTACATATTCCTGACTGTCTGGTTTGCGAAGATGCTGCATCGGCAATTGCAAAGTTGCCTAATCTTAAGCACATATTCATGAAGAACACAAAGATCGAACGGGTTAATTTTGTTAAATTACTGAAGGGCTGCAAAAATCTTGTGTCATTGGATGCCAGAAATTGTCTTGGTTTCGATGCAGGTGATAAGGAAATATCAGAACTTGCTTCTCATATCAGTGATTTCAAATGCCAAGGTTCTAGAGTTTTTGATCGCCATTCTGAGGAGGGAAAATATGTTTGGTTTCATGATTTTGTGTATGATGGATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

314

Amino Acids

36.32

Weight (kDa)

6.09

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006396)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33270
prunus_persica	Prupe.1G157900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0265521 RchiOBHm_Chr6g0265531
rosa_laevigata	RLG00000014182
rosa_multiflora	Rmu_co8123530.1_g000001 Rmu_co8387705.1_g000001 Rmu_sc0000217.1_g000007 Rmu_sc0000217.1_g000009 Rmu_sc0006004.1_g000006
rosa_roxburghii	Rroxscaffold_175G00432420 Rroxscaffold_175G00432440 Rroxscaffold_7G00202620 Rroxscaffold_7G00202640
rosa_rugosa	Rorug06G0017300
rosa_samantha	Rh6AG139500 Rh6AG139700 Rh6BG139100 Rh6BG139200 Rh6BG139600 Rh6CG136500 Rh6CG136600 Rh6CG136700 Rh6DG122700 Rh6DG123000
rosa_wichuraiana	Rw6G012010 Rw6G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	261
AarI	CACCTGC	1 cut(s)	803
Acc36I	ACCTGC	1 cut(s)	803
AccB7I	CCANNNNNTGG	1 cut(s)	583
AccI	GTMKAC	1 cut(s)	498
AclWI	GGATC	4 cut(s)	87, 203, 290, 511
AcsI	RAATTY	2 cut(s)	553, 622
AcuI	CTGAAG	3 cut(s)	300, 408, 776
AfiI	CCNNNNNNNGG	2 cut(s)	583, 895
AflII	CTTAAG	1 cut(s)	698
AflIII	ACRYGT	1 cut(s)	442
AgsI	TTSAA	2 cut(s)	275, 859
AhlI	ACTAGT	1 cut(s)	251
AjuI	GAANNNNNNNTTGG	2 cut(s)	895, 927
AluBI	AGCT	3 cut(s)	342, 452, 472
AluI	AGCT	3 cut(s)	342, 452, 472
Alw26I	GTCTC	2 cut(s)	134, 233
AlwI	GGATC	4 cut(s)	87, 203, 290, 511
Ama87I	CYCGRG	1 cut(s)	5
AoxI	GGCC	1 cut(s)	607
ApeKI	GCWGC	4 cut(s)	27, 449, 668, 762
ApoI	RAATTY	2 cut(s)	553, 622
AspLEI	GCGC	1 cut(s)	422
AsuHPI	GGTGA	3 cut(s)	115, 143, 827
AsuII	TTCGAA	1 cut(s)	70
AvaI	CYCGRG	1 cut(s)	5
BarI	GAAGNNNNNNTAC	2 cut(s)	118, 150
BbsI	GAAGAC	1 cut(s)	288
BbvI	GCAGC	4 cut(s)	14, 461, 655, 749
BccI	CCATC	3 cut(s)	248, 356, 929
BcgI	CGANNNNNNTGC	2 cut(s)	650, 684
BciVI	GTATCC	1 cut(s)	932
BcoDI	GTCTC	2 cut(s)	134, 233
BcuI	ACTAGT	1 cut(s)	251
BfaI	CTAG	2 cut(s)	252, 873
BfmI	CTRYAG	1 cut(s)	53
BfrI	CTTAAG	1 cut(s)	698
BfuAI	ACCTGC	1 cut(s)	803
BfuI	GTATCC	1 cut(s)	932
BisI	GCNGC	4 cut(s)	28, 450, 669, 763
BlsI	GCNGC	4 cut(s)	29, 451, 670, 764
BmeT110I	CYCGRG	1 cut(s)	5
BmsI	GCATC	4 cut(s)	655, 680, 775, 799
BpiI	GAAGAC	1 cut(s)	288
Bpu14I	TTCGAA	1 cut(s)	70
BsaJI	CCNNGG	1 cut(s)	865
BsaXI	ACNNNNNCTCC	2 cut(s)	542, 572
Bsc4I	CCNNNNNNNGG	2 cut(s)	583, 895
Bse1I	ACTGG	1 cut(s)	290
BseDI	CCNNGG	1 cut(s)	865
BseGI	GGATG	3 cut(s)	172, 395, 790
BseLI	CCNNNNNNNGG	2 cut(s)	583, 895
BseMII	CTCAG	1 cut(s)	885
BseNI	ACTGG	1 cut(s)	290
BseRI	GAGGAG	1 cut(s)	911
BseXI	GCAGC	4 cut(s)	14, 461, 655, 749
BshFI	GGCC	1 cut(s)	609
BsiHKCI	CYCGRG	1 cut(s)	5
BslI	CCNNNNNNNGG	2 cut(s)	583, 895
BsmAI	GTCTC	2 cut(s)	134, 233
BsmI	GAATGC	1 cut(s)	356
BsnI	GGCC	1 cut(s)	609
BsoBI	CYCGRG	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	70
Bsp143I	GATC	6 cut(s)	79, 208, 295, 516, 726, 883
BspANI	GGCC	1 cut(s)	609
BspCNI	CTCAG	1 cut(s)	886
BspHI	TCATGA	2 cut(s)	711, 919
BspMAI	CTGCAG	1 cut(s)	57
BspMI	ACCTGC	1 cut(s)	803
BspPI	GGATC	4 cut(s)	87, 203, 290, 511
BspT104I	TTCGAA	1 cut(s)	70
BspTI	CTTAAG	1 cut(s)	698
BsrI	ACTGG	1 cut(s)	290
BssECI	CCNNGG	1 cut(s)	865
BssMI	GATC	6 cut(s)	79, 208, 295, 516, 726, 883
BssT1I	CCWWGG	1 cut(s)	865
Bst4CI	ACNGT	1 cut(s)	650
Bst6I	CTCTTC	1 cut(s)	121
BstAFI	CTTAAG	1 cut(s)	698
BstBI	TTCGAA	1 cut(s)	70
BstC8I	GCNNGC	2 cut(s)	202, 486
BstDEI	CTNAG	1 cut(s)	894
BstF5I	GGATG	3 cut(s)	172, 395, 790
BstHHI	GCGC	1 cut(s)	422
BstKTI	GATC	6 cut(s)	82, 211, 298, 519, 729, 886
BstMAI	GTCTC	2 cut(s)	134, 233
BstMBI	GATC	6 cut(s)	79, 208, 295, 516, 726, 883
BstMWI	GCNNNNNNNGC	2 cut(s)	615, 674
BstNSI	RCATGY	1 cut(s)	446
BstSFI	CTRYAG	1 cut(s)	53
BstV1I	GCAGC	4 cut(s)	14, 461, 655, 749
BstV2I	GAAGAC	1 cut(s)	288
BsuI	GTATCC	1 cut(s)	932
BsuRI	GGCC	1 cut(s)	609
BtsCI	GGATG	3 cut(s)	172, 395, 790
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	3 cut(s)	351, 434, 856
BveI	ACCTGC	1 cut(s)	803
Cac8I	GCNNGC	2 cut(s)	202, 486
CciI	TCATGA	2 cut(s)	711, 919
CfoI	GCGC	1 cut(s)	422
CviAII	CATG	6 cut(s)	61, 163, 443, 578, 712, 920
CviJI	RGCY	8 cut(s)	27, 204, 342, 409, 452, 472, 609, 762
CviKI_1	RGCY	8 cut(s)	27, 204, 342, 409, 452, 472, 609, 762
DdeI	CTNAG	1 cut(s)	894
DpnI	GATC	6 cut(s)	81, 210, 297, 518, 728, 885
DpnII	GATC	6 cut(s)	79, 208, 295, 516, 726, 883
DraI	TTTAAA	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	865
Eco147I	AGGCCT	1 cut(s)	609
Eco57I	CTGAAG	3 cut(s)	300, 408, 776
Eco88I	CYCGRG	1 cut(s)	5
EcoT14I	CCWWGG	1 cut(s)	865
ErhI	CCWWGG	1 cut(s)	865
FaeI	CATG	6 cut(s)	64, 166, 446, 581, 715, 923
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FatI	CATG	6 cut(s)	60, 162, 442, 577, 711, 919
FblI	GTMKAC	1 cut(s)	498
Fnu4HI	GCNGC	4 cut(s)	28, 450, 669, 763
FokI	GGATG	3 cut(s)	179, 402, 797
Fsp4HI	GCNGC	4 cut(s)	28, 450, 669, 763
FspBI	CTAG	2 cut(s)	252, 873
GlaI	GCGC	1 cut(s)	421
GluI	GCNGC	4 cut(s)	28, 450, 669, 763
HaeIII	GGCC	1 cut(s)	609
HhaI	GCGC	1 cut(s)	422
Hin1II	CATG	6 cut(s)	64, 166, 446, 581, 715, 923
Hin6I	GCGC	1 cut(s)	420
HinP1I	GCGC	1 cut(s)	420
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	2 cut(s)	152, 330
HphI	GGTGA	3 cut(s)	115, 143, 827
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	5 cut(s)	125, 322, 427, 832, 895
Hpy188III	TCNNGA	6 cut(s)	7, 510, 644, 712, 873, 920
Hpy8I	GTNNAC	1 cut(s)	499
HpyAV	CCTTC	3 cut(s)	4, 620, 751
HpyCH4III	ACNGT	1 cut(s)	650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	615, 674
HpyF3I	CTNAG	1 cut(s)	894
Hsp92II	CATG	6 cut(s)	64, 166, 446, 581, 715, 923
HspAI	GCGC	1 cut(s)	420
Kzo9I	GATC	6 cut(s)	79, 208, 295, 516, 726, 883
LpnPI	CCDG	9 cut(s)	271, 391, 426, 498, 534, 638, 657, 798, 802
Lsp1109I	GCAGC	4 cut(s)	14, 461, 655, 749
LweI	GCATC	4 cut(s)	655, 680, 775, 799
MaeI	CTAG	2 cut(s)	252, 873
MalI	GATC	6 cut(s)	81, 210, 297, 518, 728, 885
MboI	GATC	6 cut(s)	79, 208, 295, 516, 726, 883
MboII	GAAGA	5 cut(s)	138, 293, 440, 674, 727
MfeI	CAATTG	1 cut(s)	678
MluCI	AATT	7 cut(s)	34, 553, 622, 678, 739, 749, 793
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	2 cut(s)	66, 103
MnlI	CCTC	5 cut(s)	37, 122, 471, 889, 892
MseI	TTAA	6 cut(s)	305, 375, 560, 699, 738, 747
MslI	CAYNNNNRTG	2 cut(s)	710, 849
MspCI	CTTAAG	1 cut(s)	698
MunI	CAATTG	1 cut(s)	678
Mva1269I	GAATGC	1 cut(s)	356
MwoI	GCNNNNNNNGC	2 cut(s)	615, 674
NdeII	GATC	6 cut(s)	79, 208, 295, 516, 726, 883
NlaIII	CATG	6 cut(s)	64, 166, 446, 581, 715, 923
NspI	RCATGY	1 cut(s)	446
NspV	TTCGAA	1 cut(s)	70
PaeR7I	CTCGAG	1 cut(s)	5
PagI	TCATGA	2 cut(s)	711, 919
PaqCI	CACCTGC	1 cut(s)	803
PceI	AGGCCT	1 cut(s)	609
PciI	ACATGT	1 cut(s)	442
PctI	GAATGC	1 cut(s)	356
PfeI	GAWTC	1 cut(s)	330
PflMI	CCANNNNNTGG	1 cut(s)	583
PkrI	GCNGC	4 cut(s)	29, 451, 670, 764
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PscI	ACATGT	1 cut(s)	442
PsiI	TTATAA	1 cut(s)	261
PstI	CTGCAG	1 cut(s)	57
RseI	CAYNNNNRTG	2 cut(s)	710, 849
SaqAI	TTAA	6 cut(s)	305, 375, 560, 699, 738, 747
SatI	GCNGC	4 cut(s)	28, 450, 669, 763
Sau3AI	GATC	6 cut(s)	79, 208, 295, 516, 726, 883
SchI	GAGTC	1 cut(s)	161
SetI	ASST	8 cut(s)	15, 133, 344, 415, 454, 474, 817, 871
SfaNI	GCATC	4 cut(s)	655, 680, 775, 799
SfcI	CTRYAG	1 cut(s)	53
Sfr274I	CTCGAG	1 cut(s)	5
SfuI	TTCGAA	1 cut(s)	70
SlaI	CTCGAG	1 cut(s)	5
SmiMI	CAYNNNNRTG	2 cut(s)	710, 849
SmlI	CTYRAG	2 cut(s)	5, 698
SmoI	CTYRAG	2 cut(s)	5, 698
SpeI	ACTAGT	1 cut(s)	251
Sse9I	AATT	7 cut(s)	34, 553, 622, 678, 739, 749, 793
SseBI	AGGCCT	1 cut(s)	609
SspMI	CTAG	2 cut(s)	252, 873
StuI	AGGCCT	1 cut(s)	609
StyI	CCWWGG	1 cut(s)	865
TaaI	ACNGT	1 cut(s)	650
TaqI	TCGA	5 cut(s)	6, 70, 328, 729, 807
TasI	AATT	7 cut(s)	34, 553, 622, 678, 739, 749, 793
TfiI	GAWTC	1 cut(s)	330
Tru1I	TTAA	6 cut(s)	305, 375, 560, 699, 738, 747
Tru9I	TTAA	6 cut(s)	305, 375, 560, 699, 738, 747
TscAI	CASTG	3 cut(s)	358, 441, 856
TseI	GCWGC	4 cut(s)	27, 449, 668, 762
TspDTI	ATGAA	5 cut(s)	49, 349, 700, 728, 908
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	3 cut(s)	358, 441, 856
Van91I	CCANNNNNTGG	1 cut(s)	583
Vha464I	CTTAAG	1 cut(s)	698
XapI	RAATTY	2 cut(s)	553, 622
XbaI	TCTAGA	1 cut(s)	872
XceI	RCATGY	1 cut(s)	446
XhoI	CTCGAG	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	498
XspI	CTAG	2 cut(s)	252, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.