Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005295

Physical Location & Seq

Genomic Coordinates Forward (+)

29719508 .. 29720083

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g34230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAAGCGGTCCTCCCTCTCCATCTGCTGCGTCAAGTACCTGGTGGACACCCCGGAGAACATATGGGGCTGCCTCGACGAGTCTATGTTCCTCGAGTCCGCTGCCCGCTACGTCCGTGCCCGCCACGTCCACTCCACTCTCACCACCCTCCACAACTCCTTCCTCTCTCCCTTCCCTCTCCTCCACCACCAATGGCAGATCGTCGAAACCTTCAAGTCCCAGATCTCCCAACGCTCTTGTGACCTCCTCCCCGACCGCCGCCTCTCCCACCTCCCCGTCTCCTCCTTCGCCGACGCCTTGGCCTCCCTCGCTCTCATCGACGACCTCTCCCCCCGCCACGTCCTCTCCCTCTTCCTCCACACCCGCAAGCCCTGGCTCTCCCACATTCTCAATGCCAACGCTGATGACGACGTCGTCTCTATGCTCTGTCAGGCCCTCAAGGTCATTCAGCTCACTGTGGGCCAGGTGGTGAGGAGGAGGTGGAGGCGCAGCGGCGACGACGGCCGGGGGAGGAGGAGGGGCTGCCGTCGGGGCCCATTGCTGGTGGTAGGGTTGGATGTGGAGGCAAAGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps51

Protein Analysis

192

Amino Acids

21.71

Weight (kDa)

9.58

Isoelectric Point (pI)

61.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16300 AT5G16300 AT5G16300 AT5G16300
fragaria_vesca	FvH4_3g34230 FvH4_5g28760 FvH4_5g28760 FvH4_5g28760 FvH4_5g28760
malus_domestica	MD08G1237500.v1.1 MD15G1429400.v1.1
prunus_persica	Prupe.1G575000_v2.0.a1 Prupe.1G575000_v2.0.a1 Prupe.1G575000_v2.0.a1 Prupe.1G575000_v2.0.a1 Prupe.1G575000_v2.0.a1
pyrus_communis	pycom08g20610 pycom15g38000
rosa_chinensis	RchiOBHm_Chr7g0220971
rosa_laevigata	RLG00000002190
rosa_multiflora	Rmu_sc0002105.1_g000025
rosa_roxburghii	Rroxscaffold_3G00238840
rosa_rugosa	Rorug07G0198700 Rorug07G0198800
rosa_samantha	Rh7AG338900 Rh7BG329700 Rh7CG357000 Rh7DG337700
rosa_wichuraiana	Rw7G028830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	413
AatII	GACGTC	1 cut(s)	414
AciI	CCGC	9 cut(s)	7, 99, 106, 121, 256, 259, 334, 364, 492
AcoI	YGGCCR	1 cut(s)	502
AcyI	GRCGYC	2 cut(s)	294, 411
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	541
AgsI	TTSAA	1 cut(s)	214
AjiI	CACGTC	2 cut(s)	127, 340
AjnI	CCWGG	3 cut(s)	39, 371, 462
AluBI	AGCT	1 cut(s)	451
AluI	AGCT	1 cut(s)	451
Alw26I	GTCTC	2 cut(s)	283, 421
Ama87I	CYCGRG	1 cut(s)	92
AoxI	GGCC	5 cut(s)	300, 432, 460, 502, 532
ApaI	GGGCCC	1 cut(s)	536
ApeKI	GCWGC	5 cut(s)	27, 69, 101, 489, 522
AspLEI	GCGC	1 cut(s)	489
AspS9I	GGNCC	5 cut(s)	9, 433, 460, 532, 533
AsuC2I	CCSGG	2 cut(s)	53, 506
AsuHPI	GGTGA	2 cut(s)	133, 481
AvaI	CYCGRG	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	9
BaeGI	GKGCMC	2 cut(s)	121, 536
BanII	GRGCYC	1 cut(s)	536
BbvI	GCAGC	5 cut(s)	14, 56, 88, 501, 509
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	2 cut(s)	510, 517
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BciT130I	CCWGG	3 cut(s)	41, 373, 464
BcnI	CCSGG	2 cut(s)	53, 506
BcoDI	GTCTC	2 cut(s)	283, 421
BglI	GCCNNNNNGGC	1 cut(s)	531
BglII	AGATCT	1 cut(s)	222
BisI	GCNGC	7 cut(s)	28, 70, 102, 259, 490, 493, 523
BlsI	GCNGC	7 cut(s)	29, 71, 103, 260, 491, 494, 524
Bme1390I	CCNGG	5 cut(s)	41, 53, 373, 464, 506
Bme18I	GGWCC	1 cut(s)	9
BmeT110I	CYCGRG	1 cut(s)	92
BmgBI	CACGTC	2 cut(s)	127, 340
BmgT120I	GGNCC	5 cut(s)	9, 433, 460, 532, 533
BmiI	GGNNCC	2 cut(s)	533, 534
BmrFI	CCNGG	5 cut(s)	41, 53, 373, 464, 506
BpuEI	CTTGAG	1 cut(s)	422
BpuMI	CCSGG	2 cut(s)	53, 506
BsaHI	GRCGYC	2 cut(s)	294, 411
BsaJI	CCNNGG	4 cut(s)	51, 297, 371, 505
BsaXI	ACNNNNNCTCC	6 cut(s)	116, 146, 311, 329, 341, 359
Bsc4I	CCNNNNNNNGG	1 cut(s)	541
Bse3DI	GCAATG	1 cut(s)	536
BseBI	CCWGG	3 cut(s)	41, 373, 464
BseDI	CCNNGG	4 cut(s)	51, 297, 371, 505
BseGI	GGATG	1 cut(s)	562
BseLI	CCNNNNNNNGG	1 cut(s)	541
BseMI	GCAATG	1 cut(s)	536
BseRI	GAGGAG	7 cut(s)	170, 236, 271, 487, 490, 526, 529
BseSI	GKGCMC	2 cut(s)	121, 536
BseX3I	CGGCCG	1 cut(s)	502
BseXI	GCAGC	5 cut(s)	14, 56, 88, 501, 509
Bsh1285I	CGRYCG	2 cut(s)	256, 505
BshFI	GGCC	5 cut(s)	302, 434, 462, 504, 534
BsiEI	CGRYCG	2 cut(s)	256, 505
BsiHKCI	CYCGRG	1 cut(s)	92
BsiSI	CCGG	2 cut(s)	53, 505
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	541
BsmAI	GTCTC	2 cut(s)	283, 421
BsmBI	CGTCTC	2 cut(s)	283, 421
BsmFI	GGGAC	1 cut(s)	202
BsnI	GGCC	5 cut(s)	302, 434, 462, 504, 534
BsoBI	CYCGRG	1 cut(s)	92
Bsp120I	GGGCCC	1 cut(s)	532
Bsp1286I	GDGCHC	2 cut(s)	121, 536
Bsp143I	GATC	2 cut(s)	198, 222
BspACI	CCGC	9 cut(s)	7, 99, 106, 121, 256, 259, 334, 364, 492
BspANI	GGCC	5 cut(s)	302, 434, 462, 504, 534
BspLI	GGNNCC	2 cut(s)	533, 534
BsrDI	GCAATG	1 cut(s)	536
BssECI	CCNNGG	4 cut(s)	51, 297, 371, 505
BssMI	GATC	2 cut(s)	198, 222
BssNI	GRCGYC	2 cut(s)	294, 411
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	3 cut(s)	41, 373, 464
Bst4CI	ACNGT	1 cut(s)	457
Bst6I	CTCTTC	1 cut(s)	356
BstACI	GRCGYC	2 cut(s)	294, 411
BstC8I	GCNNGC	3 cut(s)	106, 121, 368
BstF5I	GGATG	1 cut(s)	562
BstHHI	GCGC	1 cut(s)	489
BstKTI	GATC	2 cut(s)	201, 225
BstMAI	GTCTC	2 cut(s)	283, 421
BstMBI	GATC	2 cut(s)	198, 222
BstMCI	CGRYCG	2 cut(s)	256, 505
BstMWI	GCNNNNNNNGC	3 cut(s)	308, 501, 531
BstNI	CCWGG	3 cut(s)	41, 373, 464
BstSCI	CCNGG	5 cut(s)	39, 51, 371, 462, 504
BstSLI	GKGCMC	2 cut(s)	121, 536
BstV1I	GCAGC	5 cut(s)	14, 56, 88, 501, 509
BstX2I	RGATCY	1 cut(s)	222
BstYI	RGATCY	1 cut(s)	222
BstZI	CGGCCG	1 cut(s)	502
BsuRI	GGCC	5 cut(s)	302, 434, 462, 504, 534
BtrI	CACGTC	2 cut(s)	127, 340
BtsCI	GGATG	1 cut(s)	562
BtsIMutI	CAGTG	1 cut(s)	453
Cac8I	GCNNGC	3 cut(s)	106, 121, 368
CfoI	GCGC	1 cut(s)	489
Cfr13I	GGNCC	5 cut(s)	9, 433, 460, 532, 533
CseI	GACGC	2 cut(s)	19, 302
CsiI	ACCWGGT	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	37
CviQI	GTAC	1 cut(s)	37
DpnI	GATC	2 cut(s)	200, 224
DpnII	GATC	2 cut(s)	198, 222
DrdI	GACNNNNNNGTC	1 cut(s)	413
DseDI	GACNNNNNNGTC	1 cut(s)	413
EaeI	YGGCCR	1 cut(s)	502
EagI	CGGCCG	1 cut(s)	502
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
EclXI	CGGCCG	1 cut(s)	502
Eco130I	CCWWGG	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	536
Eco47I	GGWCC	1 cut(s)	9
Eco52I	CGGCCG	1 cut(s)	502
Eco88I	CYCGRG	1 cut(s)	92
EcoO109I	RGGNCCY	2 cut(s)	433, 532
EcoRII	CCWGG	3 cut(s)	39, 371, 462
EcoT14I	CCWWGG	1 cut(s)	297
EcoT38I	GRGCYC	1 cut(s)	536
ErhI	CCWWGG	1 cut(s)	297
Esp3I	CGTCTC	2 cut(s)	283, 421
FaiI	YATR	4 cut(s)	62, 64, 86, 422
FaqI	GGGAC	1 cut(s)	202
FauI	CCCGC	4 cut(s)	113, 128, 341, 371
FauNDI	CATATG	1 cut(s)	62
Fnu4HI	GCNGC	7 cut(s)	28, 70, 102, 259, 490, 493, 523
FokI	GGATG	1 cut(s)	569
FriOI	GRGCYC	1 cut(s)	536
Fsp4HI	GCNGC	7 cut(s)	28, 70, 102, 259, 490, 493, 523
GlaI	GCGC	1 cut(s)	488
GluI	GCNGC	7 cut(s)	28, 70, 102, 259, 490, 493, 523
HaeIII	GGCC	5 cut(s)	302, 434, 462, 504, 534
HapII	CCGG	2 cut(s)	53, 505
HgaI	GACGC	2 cut(s)	19, 302
HhaI	GCGC	1 cut(s)	489
Hin1I	GRCGYC	2 cut(s)	294, 411
Hin6I	GCGC	1 cut(s)	487
HinP1I	GCGC	1 cut(s)	487
HinfI	GANTC	2 cut(s)	80, 95
HpaII	CCGG	2 cut(s)	53, 505
HphI	GGTGA	2 cut(s)	133, 481
Hpy166II	GTNNAC	2 cut(s)	46, 130
Hpy8I	GTNNAC	2 cut(s)	46, 130
Hpy99I	CGWCG	9 cut(s)	80, 206, 296, 323, 413, 416, 500, 503, 531
HpyAV	CCTTC	4 cut(s)	169, 181, 220, 295
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4IV	ACGT	4 cut(s)	111, 126, 339, 411
HpyF10VI	GCNNNNNNNGC	3 cut(s)	308, 501, 531
HpySE526I	ACGT	4 cut(s)	111, 126, 339, 411
Hsp92I	GRCGYC	2 cut(s)	294, 411
HspAI	GCGC	1 cut(s)	487
Kzo9I	GATC	2 cut(s)	198, 222
Lsp1109I	GCAGC	5 cut(s)	14, 56, 88, 501, 509
MabI	ACCWGGT	1 cut(s)	39
MaeII	ACGT	4 cut(s)	111, 126, 339, 411
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	2 cut(s)	200, 224
MboI	GATC	2 cut(s)	198, 222
MboII	GAAGA	1 cut(s)	343
MflI	RGATCY	1 cut(s)	222
MhlI	GDGCHC	2 cut(s)	121, 536
MlyI	GAGTC	2 cut(s)	89, 104
MmeI	TCCRAC	1 cut(s)	534
MspA1I	CMGCKG	2 cut(s)	101, 492
MspI	CCGG	2 cut(s)	53, 505
MspR9I	CCNGG	5 cut(s)	41, 53, 373, 464, 506
MvaI	CCWGG	3 cut(s)	41, 373, 464
MwoI	GCNNNNNNNGC	3 cut(s)	308, 501, 531
NciI	CCSGG	2 cut(s)	53, 506
NdeI	CATATG	1 cut(s)	62
NdeII	GATC	2 cut(s)	198, 222
NlaIV	GGNNCC	2 cut(s)	533, 534
NmuCI	GTSAC	1 cut(s)	239
PaeR7I	CTCGAG	1 cut(s)	92
PcsI	WCGNNNNNNNCGW	2 cut(s)	315, 405
PflFI	GACNNNGTC	2 cut(s)	410, 413
PkrI	GCNGC	7 cut(s)	29, 71, 103, 260, 491, 494, 524
PleI	GAGTC	2 cut(s)	88, 103
PpsI	GAGTC	2 cut(s)	88, 103
Psp6I	CCWGG	3 cut(s)	39, 371, 462
PspGI	CCWGG	3 cut(s)	39, 371, 462
PspN4I	GGNNCC	2 cut(s)	533, 534
PspOMI	GGGCCC	1 cut(s)	532
PspPI	GGNCC	5 cut(s)	9, 433, 460, 532, 533
PspXI	VCTCGAGB	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	222
PsyI	GACNNNGTC	2 cut(s)	410, 413
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SatI	GCNGC	7 cut(s)	28, 70, 102, 259, 490, 493, 523
Sau3AI	GATC	2 cut(s)	198, 222
Sau96I	GGNCC	5 cut(s)	9, 433, 460, 532, 533
SchI	GAGTC	2 cut(s)	89, 104
ScrFI	CCNGG	5 cut(s)	41, 53, 373, 464, 506
SduI	GDGCHC	2 cut(s)	121, 536
SexAI	ACCWGGT	1 cut(s)	39
Sfr274I	CTCGAG	1 cut(s)	92
SinI	GGWCC	1 cut(s)	9
SlaI	CTCGAG	1 cut(s)	92
SmlI	CTYRAG	2 cut(s)	92, 437
SmoI	CTYRAG	2 cut(s)	92, 437
SsiI	CCGC	9 cut(s)	7, 99, 106, 121, 256, 259, 334, 364, 492
StyD4I	CCNGG	5 cut(s)	39, 51, 371, 462, 504
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	457
TaiI	ACGT	4 cut(s)	114, 129, 342, 414
TaqI	TCGA	4 cut(s)	75, 93, 204, 318
TauI	GCSGC	2 cut(s)	261, 495
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	5 cut(s)	27, 69, 101, 489, 522
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	1 cut(s)	460
Tth111I	GACNNNGTC	2 cut(s)	410, 413
VpaK11BI	GGWCC	1 cut(s)	9
XhoI	CTCGAG	1 cut(s)	92
ZraI	GACGTC	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.