Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005295

Physical Location & Seq

Genomic Coordinates Reverse (-)

17228090 .. 17228575

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0198800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCGGAGCTGGAAGTTCCGAGAGGCAACAACTCCATCCCGCTAGGTAAACGACGTCGTCTGTTCGATCCAAGCCGGCGTCTTCCTGGACTTCATGATCATCCCGGAGCACGTGTTCGAGATCCTCTCCTCCGATTGGAGCAAGTACGACGTTGCATCATCGCCACCGCCTCCGTCGTCAAATCGATCAAGGACATAAAAGGAGCTGCCTTCTTCGCTGCCCACGAGCTCCAAGAACTACTGGGAAGTTGTTTAGTTATGGTAAGCCAAGAAGCGAGCCAAGCTAGATTTCGAGTATTGAAACATGAAAATGGGATTGATGGGAGCGCCACCATAATTTCAACCTCTTCAGGATTGCCAGGTGGGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps51

Protein Analysis

123

Amino Acids

13.35

Weight (kDa)

10.16

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16300 AT5G16300 AT5G16300 AT5G16300
fragaria_vesca	FvH4_3g34230 FvH4_5g28760 FvH4_5g28760 FvH4_5g28760 FvH4_5g28760
malus_domestica	MD08G1237500.v1.1 MD15G1429400.v1.1
prunus_persica	Prupe.1G575000_v2.0.a1 Prupe.1G575000_v2.0.a1 Prupe.1G575000_v2.0.a1 Prupe.1G575000_v2.0.a1 Prupe.1G575000_v2.0.a1
pyrus_communis	pycom08g20610 pycom15g38000
rosa_chinensis	RchiOBHm_Chr7g0220971
rosa_laevigata	RLG00000002190
rosa_multiflora	Rmu_sc0002105.1_g000025
rosa_roxburghii	Rroxscaffold_3G00238840
rosa_rugosa	Rorug07G0198700 Rorug07G0198800
rosa_samantha	Rh7AG338900 Rh7BG329700 Rh7CG357000 Rh7DG337700
rosa_wichuraiana	Rw7G028830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	58
AciI	CCGC	3 cut(s)	5, 41, 168
AclWI	GGATC	2 cut(s)	62, 116
AcuI	CTGAAG	1 cut(s)	333
AcvI	CACGTG	1 cut(s)	113
AcyI	GRCGYC	2 cut(s)	55, 79
AfaI	GTAC	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	136
AflIII	ACRYGT	1 cut(s)	112
AgsI	TTSAA	2 cut(s)	301, 342
AjnI	CCWGG	2 cut(s)	85, 358
AjuI	GAANNNNNNNTTGG	2 cut(s)	273, 305
AloI	GAACNNNNNNTCC	2 cut(s)	99, 131
AluBI	AGCT	4 cut(s)	10, 206, 229, 284
AluI	AGCT	4 cut(s)	10, 206, 229, 284
Alw21I	GWGCWC	2 cut(s)	112, 231
AlwI	GGATC	2 cut(s)	62, 116
ApeKI	GCWGC	2 cut(s)	206, 218
AspLEI	GCGC	1 cut(s)	329
AsuC2I	CCSGG	1 cut(s)	105
BanII	GRGCYC	1 cut(s)	231
BauI	CACGAG	1 cut(s)	224
BbrPI	CACGTG	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	74
Bbv12I	GWGCWC	2 cut(s)	112, 231
BbvI	GCAGC	2 cut(s)	193, 205
BccI	CCATC	2 cut(s)	44, 314
BciT130I	CCWGG	2 cut(s)	87, 360
BclI	TGATCA	1 cut(s)	97
BcnI	CCSGG	1 cut(s)	105
BfaI	CTAG	2 cut(s)	44, 285
BfoI	RGCGCY	1 cut(s)	330
BisI	GCNGC	2 cut(s)	207, 219
BlsI	GCNGC	2 cut(s)	208, 220
Bme1390I	CCNGG	3 cut(s)	87, 105, 360
BmrFI	CCNGG	3 cut(s)	87, 105, 360
BmrI	ACTGGG	1 cut(s)	251
BmsI	GCATC	1 cut(s)	165
BmuI	ACTGGG	1 cut(s)	251
BpiI	GAAGAC	1 cut(s)	74
BplI	GAGNNNNNCTC	2 cut(s)	111, 143
BpuMI	CCSGG	1 cut(s)	105
Bsa29I	ATCGAT	1 cut(s)	185
BsaAI	YACGTR	1 cut(s)	113
BsaHI	GRCGYC	2 cut(s)	55, 79
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse118I	RCCGGY	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	246
BseBI	CCWGG	2 cut(s)	87, 360
BseCI	ATCGAT	1 cut(s)	185
BseGI	GGATG	2 cut(s)	36, 100
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseNI	ACTGG	1 cut(s)	246
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	2 cut(s)	193, 205
BshVI	ATCGAT	1 cut(s)	185
BsiHKAI	GWGCWC	2 cut(s)	112, 231
BsiSI	CCGG	2 cut(s)	76, 105
BslI	CCNNNNNNNGG	1 cut(s)	136
Bsp1286I	GDGCHC	2 cut(s)	112, 231
Bsp143I	GATC	4 cut(s)	67, 97, 121, 186
BspACI	CCGC	3 cut(s)	5, 41, 168
BspDI	ATCGAT	1 cut(s)	185
BspHI	TCATGA	1 cut(s)	94
BspPI	GGATC	2 cut(s)	62, 116
BsrFI	RCCGGY	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	246
BssAI	RCCGGY	1 cut(s)	75
BssMI	GATC	4 cut(s)	67, 97, 121, 186
BssNI	GRCGYC	2 cut(s)	55, 79
BssSI	CACGAG	1 cut(s)	224
Bst2BI	CACGAG	1 cut(s)	224
Bst2UI	CCWGG	2 cut(s)	87, 360
Bst6I	CTCTTC	1 cut(s)	352
BstACI	GRCGYC	2 cut(s)	55, 79
BstBAI	YACGTR	1 cut(s)	113
BstC8I	GCNNGC	2 cut(s)	77, 277
BstF5I	GGATG	2 cut(s)	36, 100
BstH2I	RGCGCY	1 cut(s)	330
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	4 cut(s)	70, 100, 124, 189
BstMBI	GATC	4 cut(s)	67, 97, 121, 186
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 281
BstNI	CCWGG	2 cut(s)	87, 360
BstSCI	CCNGG	3 cut(s)	85, 103, 358
BstV1I	GCAGC	2 cut(s)	193, 205
BstV2I	GAAGAC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
Bsu15I	ATCGAT	1 cut(s)	185
BsuTUI	ATCGAT	1 cut(s)	185
BtgZI	GCGATG	1 cut(s)	145
BtsCI	GGATG	2 cut(s)	36, 100
Cac8I	GCNNGC	2 cut(s)	77, 277
CciI	TCATGA	1 cut(s)	94
CfoI	GCGC	1 cut(s)	329
Cfr10I	RCCGGY	1 cut(s)	75
ClaI	ATCGAT	1 cut(s)	185
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	146
CviAII	CATG	2 cut(s)	95, 305
CviJI	RGCY	7 cut(s)	10, 75, 206, 229, 267, 279, 284
CviKI_1	RGCY	7 cut(s)	10, 75, 206, 229, 267, 279, 284
CviQI	GTAC	1 cut(s)	146
DpnI	GATC	4 cut(s)	69, 99, 123, 188
DpnII	GATC	4 cut(s)	67, 97, 121, 186
Eam1104I	CTCTTC	1 cut(s)	352
EarI	CTCTTC	1 cut(s)	352
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	333
Eco72I	CACGTG	1 cut(s)	113
EcoICRI	GAGCTC	1 cut(s)	229
EcoRII	CCWGG	2 cut(s)	85, 358
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	2 cut(s)	98, 308
FaiI	YATR	6 cut(s)	96, 197, 260, 306, 335, 370
FatI	CATG	2 cut(s)	94, 304
FauI	CCCGC	1 cut(s)	48
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	2 cut(s)	207, 219
FokI	GGATG	2 cut(s)	23, 87
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	2 cut(s)	207, 219
FspBI	CTAG	2 cut(s)	44, 285
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	2 cut(s)	207, 219
HaeII	RGCGCY	1 cut(s)	330
HapII	CCGG	2 cut(s)	76, 105
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	329
Hin1I	GRCGYC	2 cut(s)	55, 79
Hin1II	CATG	2 cut(s)	98, 308
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HpaII	CCGG	2 cut(s)	76, 105
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188I	TCNGA	2 cut(s)	21, 134
Hpy188III	TCNNGA	3 cut(s)	95, 119, 351
Hpy8I	GTNNAC	1 cut(s)	50
Hpy99I	CGWCG	4 cut(s)	57, 60, 153, 179
HpyAV	CCTTC	1 cut(s)	220
HpyCH4IV	ACGT	3 cut(s)	55, 112, 151
HpyCH4V	TGCA	1 cut(s)	156
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 281
HpySE526I	ACGT	3 cut(s)	55, 112, 151
Hsp92I	GRCGYC	2 cut(s)	55, 79
Hsp92II	CATG	2 cut(s)	98, 308
HspAI	GCGC	1 cut(s)	327
KroI	GCCGGC	1 cut(s)	75
KroNI	GCCGGC	1 cut(s)	77
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	4 cut(s)	67, 97, 121, 186
LmnI	GCTCC	6 cut(s)	7, 107, 139, 203, 234, 324
LpnPI	CCDG	7 cut(s)	72, 89, 99, 118, 227, 336, 345
Lsp1109I	GCAGC	2 cut(s)	193, 205
LweI	GCATC	1 cut(s)	165
MaeI	CTAG	2 cut(s)	44, 285
MaeII	ACGT	3 cut(s)	55, 112, 151
MalI	GATC	4 cut(s)	69, 99, 123, 188
MboI	GATC	4 cut(s)	67, 97, 121, 186
MboII	GAAGA	3 cut(s)	74, 205, 339
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	2 cut(s)	112, 231
MluCI	AATT	1 cut(s)	336
MnlI	CCTC	5 cut(s)	17, 135, 140, 181, 355
MroNI	GCCGGC	1 cut(s)	75
MslI	CAYNNNNRTG	1 cut(s)	309
MspI	CCGG	2 cut(s)	76, 105
MspR9I	CCNGG	3 cut(s)	87, 105, 360
MvaI	CCWGG	2 cut(s)	87, 360
MwoI	GCNNNNNNNGC	2 cut(s)	215, 281
NaeI	GCCGGC	1 cut(s)	77
NciI	CCSGG	1 cut(s)	105
NdeII	GATC	4 cut(s)	67, 97, 121, 186
NgoMIV	GCCGGC	1 cut(s)	75
NlaIII	CATG	2 cut(s)	98, 308
PagI	TCATGA	1 cut(s)	94
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PdiI	GCCGGC	1 cut(s)	77
PflFI	GACNNNGTC	1 cut(s)	57
PfoI	TCCNGGA	2 cut(s)	85, 103
PkrI	GCNGC	2 cut(s)	208, 220
PmaCI	CACGTG	1 cut(s)	113
PmlI	CACGTG	1 cut(s)	113
Ppu21I	YACGTR	1 cut(s)	113
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	2 cut(s)	85, 358
PspCI	CACGTG	1 cut(s)	113
PspGI	CCWGG	2 cut(s)	85, 358
PsuI	RGATCY	1 cut(s)	121
PsyI	GACNNNGTC	1 cut(s)	57
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
RseI	CAYNNNNRTG	1 cut(s)	309
SacI	GAGCTC	1 cut(s)	231
SatI	GCNGC	2 cut(s)	207, 219
Sau3AI	GATC	4 cut(s)	67, 97, 121, 186
ScrFI	CCNGG	3 cut(s)	87, 105, 360
SduI	GDGCHC	2 cut(s)	112, 231
SfaNI	GCATC	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	309
Sse9I	AATT	1 cut(s)	336
SsiI	CCGC	3 cut(s)	5, 41, 168
SspMI	CTAG	2 cut(s)	44, 285
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	3 cut(s)	85, 103, 358
TaiI	ACGT	3 cut(s)	58, 115, 154
TaqI	TCGA	4 cut(s)	66, 118, 185, 292
TasI	AATT	1 cut(s)	336
TseI	GCWGC	2 cut(s)	206, 218
TspDTI	ATGAA	2 cut(s)	83, 321
TspGWI	ACGGA	1 cut(s)	163
Tth111I	GACNNNGTC	1 cut(s)	57
XspI	CTAG	2 cut(s)	44, 285
ZraI	GACGTC	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.