Rroxscaffold_3G00238840

Conserved oligomeric Golgi complex subunit 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0005295
Physical Location & Seq
Reverse (-)
27233426 .. 27239103
5678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00238840.1

Sequence Viewer

Length: 3027 bp
ATGAGAGTGAGTTCGACGAGCAATGAGGGAGGGGCACCGGCGGCGGCTTCTAGGGACGCGGAAGGGCTGTTCCGCACCAAAGGCATCACCGAGATTCGCAATGTCGAATCGACGACGCGGAAGCAGATCCAAGCCAAGAAGGAGGAGCTCCGTCAACTCGTCGGCACTCGCTACCGCGACCTCATCGACTCCGCCGACTCCATCGTCCTCATGAAGCGTTCCGCCCACTCCATCTCCCGCAACCTCTCCTCCTCCTCCTCCGACTCCTCCGTTCGCATCTACGGAATCGCCTGCCGGGTCAAGTACCTGGTCGACACCCCCGAGAACATCTGGGGCTGCCTCGACGAGTCCATGTTCCTCGAGTCCGCCGCCCGCTACGTCCGCGCCAGCCACGTCCACTTCACCCTCACCACCCTCCACAAGCCCTTCCTCTCTCACTTTCCTCTCCTCCAGCACCAATGGCAGATCGTCGACAGCTTCAAGTCCCAGATCTCCCAGCGCGCCCGCGACCGCCTCTCCGATCACCGCCAATCCAACCTCCCCGTCTCCTCCTACGCCGACGCTTTGGCTGCCGTCGCTCTCATCGACGACCTCCCTCCCCAACACGTCCTCTCCCTCTTCCTCGACACCCGCAAGGCCTGGGTTTCCCACATTTTGAATACTTCCACTTCCTCAGTTGAATGCTCCGACGTTGTTTCGGTCCTTTGCGAGGCCCTCAGGGTTATTCAGGTCACTGTGGGCCAGGTTGGGGAATTGTTTCTCCGGGTTTTCAACGACATGCCCCTGTTTTACAAGGTGGTCTTGGGTTGCCCTCCTGCATCTCAACTCTTTGGCGGCATTCCCAACCCGGATGAGGAGGTCAAGCTTTGGAATTCCTTCAGGGATAAGTTGGAGTCTGCCATGGTAATGCTGGACAAAGATGATATTGCGAAAGCTTCTTCTTCATGGCTTGCAGACTGTGGAGCTCAGATGGTGGATAAGATCAATGGCAGGTATCTCATTGATGCTATTGGCAGCGGCAAAGAGCTTGCCTCCGCTGAGAGGTTGATAAGGGAGACTATGAATAGCAAAGAGGTCTTAGAAGGAAGCTTGGAGTGGCTCAAGAAAGTTTTCGGCTCCCAAATTGACCTGCCATGGAGTAGAATGAGTGAACTTGTTCTGGGAGATGATTCAGACCTCTGGGACAGTATCTTTGAAAGTGGATTTGTTGGGAGGATGAAGGTGATTGTGGACTCCAGGTTTGAGAAGCTCAAGACGGCTGCCAATATTAATGATGGTGAGGCCATTGAATTCCTAGGTGCAGGTGGTGGAGTTTGGTTTATAGAATCCAAATCCAATAGTAAGAAGGCTACTGCTCTGCCATGTGAAGAGAACTGTCTCAATTTCTATTTTGGTCCTCAAGTTAGTGATATTAGGGATGCGGTGGATAGCAGCTGTCAGGATGTGCTTGATGACCTCCTCTCTTTTCTGGAGTCTCCAAAGGCAGCTGTCAGATTAAAGAATCTGGCACCCTATCTACAAGACAAGTGTTTCCAAACTATATCCATCATATTGGAGCAACTAAGTAGTGAGCTTGATAATTTGGAAAAGGGCAGCAACAAGCAAAAGCTGCTAACCGTTGAAAGGGCTCTATTCATTGGGAGACTCTTGTTTGCATTGCAGAATCACTCCAAACACATTCCCTTAGTACTTGGCCCTCCAAGGTCTTGGGTGAATGAAAGTGAGTCTGCAGTTTTCGACAAGTTACCATCCTTATTGAGACAGTCTAGAGCCCCCACCGATTCTCATGTGCTTGATAGCCCCTTGGGCTCTAAAAGACACACCTCATCTGCTACTGCTGCACTGCTTGGAGCCAGCCAAAGTGCAAGCCCTAAACTTGAAGAGCTTAATGTGACCATGCGAAATCTCCGCATTAGAGCGCACACTTTCTGGATGACTTGGCTATCCGATGAGCTCTCAGTTATACTTTCCCATGATCTAGAAAAGGACGATGCTTTGTCATCCTCAACTCCCCTGAGGGGTTGGGAAGAGACAGTAGTTAGGCAAGAGCAGTCTGATGATAACCAATCAGAGATGAAAATATGGCTCCCATCCATGCCTTCTCTCTATGTTGTCTCATTTCTATTCCGTATATGTGAAGAAGTTCATCGAATAGGAGGTCATGTCCTAGACAAAATAATTCTGCAAAAATTTGCATTACAACTGTTGGAAAAGGTCATTGGCATTTATGGCGACTTCCTTTCTAATCTAGATGCTGGTGGGTCTCAAGTGTCAGAAAAAGGAGTTTTGCAGATTTTGTTAGACTTGAGATTTGTTTTTGATGTCCTCTCTGGGGGTGATTCTAATTTGAATGAGGAGCGGAAGACAAAAAGTACTTTCAGAAGGAAGCAGGACCAAAGCCGTATGAAGTCAGCTACTAGAGAGCGTTTTGATGGGTTGATACATCATTTTTCACAAAGATTGGATCCCATAGACTGGCTTACGTACGAGCCGTATCTCTGGGAAAATGAGAAGCAGTCCTACCTCCGGCATGCCGTCCTTTTTGGATTCTTTGTGCAACTTAATCGCATGTACACAGACACTGTTCAGAAACTTCCTACTAATTCAGAGTCCAATATCATGAGATGCTCTTCAGTTCCTCGCTTTAAGTACCTTCCAATCAGTGCCCCAGCATTGTCTTCAAGAGGGACAGCAGCTAAGACATCCATTCAAACATCTTCCGATGATATTTCTTCAAGAAGTAGCTGGAAAGCTTATACAAATGGAGAGCTGTCCAGAAGTATTGATTTGGATGATAACTCAAGTTTTGGGGTTGCACTAGGTTCTCAAATTGATGTTCCTTTTAATGGGCAGGCTGGAAGTAGGTTTGGAGAGAGCACATTAAAACTGGGATCCATGCTAACAGATGGGCAAGTGGGCATATTCAAGGATAGATCAGCTGCTGCCATGTCGACATTTGGTGACATTCTACCTGCCCACGCTGCAGGTCTCCTTTCATCATTCACAGCTTCCAGATCAGACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Vps51

Protein Analysis

1008

Amino Acids

112.22

Weight (kDa)

5.97

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VPS51_Exo84_N PF08700 17 - 84 2.7e-13 Vps51/EXO84/COG1 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1292
AasI GACNNNNNNGTC 1 cut(s) 203
Acc36I ACCTGC 5 cut(s) 981, 1137, 1292, 2975, 2980
AccB1I GGYRCC 2 cut(s) 34, 1507
AccB7I CCANNNNNTGG 1 cut(s) 2475
AccBSI CCGCTC 1 cut(s) 2359
AccI GTMKAC 3 cut(s) 312, 471, 2951
AccII CGCG 6 cut(s) 59, 118, 177, 384, 501, 507
AclWI GGATC 5 cut(s) 121, 2459, 2472, 2886, 2899
AcsI RAATTY 3 cut(s) 871, 1289, 2189
AcuI CTGAAG 2 cut(s) 862, 2616
AfaI GTAC 6 cut(s) 305, 1689, 2374, 2486, 2573, 2651
AflIII ACRYGT 1 cut(s) 604
AjiI CACGTC 2 cut(s) 394, 607
AjnI CCWGG 4 cut(s) 306, 638, 741, 1235
AjuI GAANNNNNNNTTGG 2 cut(s) 2202, 2234
AloI GAACNNNNNNTCC 2 cut(s) 53, 85
Alw21I GWGCWC 4 cut(s) 150, 967, 1956, 2879
AlwI GGATC 5 cut(s) 121, 2459, 2472, 2886, 2899
AlwNI CAGNNNCTG 2 cut(s) 2582, 2942
Ama87I CYCGRG 2 cut(s) 320, 359
AoxI GGCC 5 cut(s) 636, 711, 739, 1281, 1693
ApoI RAATTY 3 cut(s) 871, 1289, 2189
ArsI GACNNNNNNTTYG 8 cut(s) 1175, 1207, 1223, 1255, 2143, 2175, 2294, 2326
AseI ATTAAT 1 cut(s) 1269
Asp700I GAANNNNTTC 5 cut(s) 756, 875, 1109, 1155, 2142
AspA2I CCTAGG 1 cut(s) 1294
AspLEI GCGC 4 cut(s) 386, 501, 503, 1921
AspS9I GGNCC 6 cut(s) 700, 712, 739, 1394, 1694, 2392
AsuC2I CCSGG 3 cut(s) 296, 764, 848
AsuHPI GGTGA 9 cut(s) 79, 394, 400, 515, 1234, 1289, 1723, 2348, 2972
AvaI CYCGRG 2 cut(s) 320, 359
AvaII GGWCC 3 cut(s) 700, 1394, 2392
AvrII CCTAGG 1 cut(s) 1294
AxyI CCTNAGG 2 cut(s) 716, 2015
BaeGI GKGCMC 2 cut(s) 37, 2668
BamHI GGATCC 2 cut(s) 2464, 2891
BanI GGYRCC 2 cut(s) 34, 1507
BanII GRGCYC 6 cut(s) 150, 967, 1630, 1774, 1811, 1956
BarI GAAGNNNNNNTAC 2 cut(s) 2504, 2536
BbsI GAAGAC 2 cut(s) 2369, 2670
Bbv12I GWGCWC 4 cut(s) 150, 967, 1956, 2879
BccI CCATC 9 cut(s) 209, 239, 964, 1268, 1553, 1756, 2098, 2426, 2900
BceAI ACGGC 5 cut(s) 557, 1272, 2385, 2476, 2519
BcgI CGANNNNNNTGC 2 cut(s) 2546, 2580
BciT130I CCWGG 4 cut(s) 308, 640, 743, 1237
BcnI CCSGG 3 cut(s) 296, 764, 848
BfaI CTAG 8 cut(s) 51, 1295, 1767, 1979, 2168, 2249, 2418, 2819
BfmI CTRYAG 2 cut(s) 1728, 2982
BfuAI ACCTGC 5 cut(s) 981, 1137, 1292, 2975, 2980
BglI GCCNNNNNGGC 1 cut(s) 1806
BglII AGATCT 1 cut(s) 489
BlnI CCTAGG 1 cut(s) 1294
BmcAI AGTACT 2 cut(s) 1689, 2374
Bme1390I CCNGG 7 cut(s) 296, 308, 640, 743, 764, 848, 1237
Bme18I GGWCC 3 cut(s) 700, 1394, 2392
BmeT110I CYCGRG 2 cut(s) 320, 359
BmgBI CACGTC 2 cut(s) 394, 607
BmgT120I GGNCC 6 cut(s) 700, 712, 739, 1394, 1694, 2392
BmiI GGNNCC 7 cut(s) 36, 1117, 1509, 1852, 2087, 2466, 2893
BmrFI CCNGG 7 cut(s) 296, 308, 640, 743, 764, 848, 1237
BmrI ACTGGG 1 cut(s) 2897
BmsI GCATC 8 cut(s) 93, 285, 827, 994, 1408, 1981, 2242, 2615
BmuI ACTGGG 1 cut(s) 2897
BpiI GAAGAC 2 cut(s) 2369, 2670
BplI GAGNNNNNCTC 2 cut(s) 1016, 1048
BpmI CTGGAG 3 cut(s) 434, 1219, 1490
BpuEI CTTGAG 6 cut(s) 1085, 1235, 1383, 2250, 2326, 2785
BpuMI CCSGG 3 cut(s) 296, 764, 848
BsaAI YACGTR 1 cut(s) 2484
BsaI GGTCTC 2 cut(s) 2268, 2993
BsaJI CCNNGG 6 cut(s) 639, 900, 1133, 1294, 1700, 1803
Bse118I RCCGGY 1 cut(s) 37
Bse1I ACTGG 2 cut(s) 2480, 2892
Bse21I CCTNAGG 2 cut(s) 716, 2015
Bse3DI GCAATG 3 cut(s) 28, 106, 1655
BseBI CCWGG 4 cut(s) 308, 640, 743, 1237
BseDI CCNNGG 6 cut(s) 639, 900, 1133, 1294, 1700, 1803
BseMI GCAATG 3 cut(s) 28, 106, 1655
BseMII CTCAG 6 cut(s) 687, 730, 980, 1029, 1971, 2006
BseNI ACTGG 2 cut(s) 2480, 2892
BsePI GCGCGC 1 cut(s) 499
BseSI GKGCMC 2 cut(s) 37, 2668
BseYI CCCAGC 2 cut(s) 495, 2668
BsgI GTGCAG 2 cut(s) 1320, 1824
Bsh1236I CGCG 6 cut(s) 59, 118, 177, 384, 501, 507
Bsh1285I CGRYCG 1 cut(s) 511
BshFI GGCC 5 cut(s) 638, 713, 741, 1283, 1695
BshNI GGYRCC 2 cut(s) 34, 1507
BsiEI CGRYCG 1 cut(s) 511
BsiHKAI GWGCWC 4 cut(s) 150, 967, 1956, 2879
BsiHKCI CYCGRG 2 cut(s) 320, 359
BsiSI CCGG 5 cut(s) 38, 295, 763, 848, 2527
BsiWI CGTACG 1 cut(s) 2484
BslFI GGGAC 4 cut(s) 68, 469, 1196, 2701
BsmBI CGTCTC 1 cut(s) 550
BsmFI GGGAC 4 cut(s) 68, 469, 1196, 2701
BsmI GAATGC 2 cut(s) 686, 837
BsnI GGCC 5 cut(s) 638, 713, 741, 1283, 1695
Bso31I GGTCTC 2 cut(s) 2268, 2993
BsoBI CYCGRG 2 cut(s) 320, 359
Bsp1286I GDGCHC 9 cut(s) 37, 150, 967, 1630, 1774, 1811, 1956, 2668, 2879
Bsp1407I TGTACA 1 cut(s) 2571
Bsp19I CCATGG 2 cut(s) 900, 1133
BspANI GGCC 5 cut(s) 638, 713, 741, 1283, 1695
BspCNI CTCAG 6 cut(s) 686, 729, 979, 1030, 1970, 2007
BspFNI CGCG 6 cut(s) 59, 118, 177, 384, 501, 507
BspHI TCATGA 2 cut(s) 210, 2619
BspLI GGNNCC 7 cut(s) 36, 1117, 1509, 1852, 2087, 2466, 2893
BspMAI CTGCAG 2 cut(s) 1732, 2986
BspMI ACCTGC 5 cut(s) 981, 1137, 1292, 2975, 2980
BspPI GGATC 5 cut(s) 121, 2459, 2472, 2886, 2899
BspQI GCTCTTC 2 cut(s) 1875, 2635
BspT107I GGYRCC 2 cut(s) 34, 1507
BspTNI GGTCTC 2 cut(s) 2268, 2993
BsrBI CCGCTC 1 cut(s) 2359
BsrDI GCAATG 3 cut(s) 28, 106, 1655
BsrFI RCCGGY 1 cut(s) 37
BsrGI TGTACA 1 cut(s) 2571
BsrI ACTGG 2 cut(s) 2480, 2892
BssAI RCCGGY 1 cut(s) 37
BssECI CCNNGG 6 cut(s) 639, 900, 1133, 1294, 1700, 1803
BssHII GCGCGC 1 cut(s) 499
BssT1I CCWWGG 5 cut(s) 900, 1133, 1294, 1700, 1803
Bst2UI CCWGG 4 cut(s) 308, 640, 743, 1237
Bst4CI ACNGT 9 cut(s) 736, 959, 1187, 1376, 1618, 1764, 2035, 2205, 2584
Bst6I CTCTTC 5 cut(s) 623, 1362, 1875, 2022, 2635
BstAPI GCANNNNNTGC 1 cut(s) 1609
BstAUI TGTACA 1 cut(s) 2571
BstBAI YACGTR 1 cut(s) 2484
BstDSI CCRYGG 2 cut(s) 900, 1133
BstENI CCTNNNNNAGG 1 cut(s) 707
BstFNI CGCG 6 cut(s) 59, 118, 177, 384, 501, 507
BstHHI GCGC 4 cut(s) 386, 501, 503, 1921
BstMCI CGRYCG 1 cut(s) 511
BstNI CCWGG 4 cut(s) 308, 640, 743, 1237
BstNSI RCATGY 3 cut(s) 781, 2534, 2572
BstSCI CCNGG 7 cut(s) 294, 306, 638, 741, 762, 846, 1235
BstSFI CTRYAG 2 cut(s) 1728, 2982
BstSLI GKGCMC 2 cut(s) 37, 2668
BstSNI TACGTA 1 cut(s) 2484
BstUI CGCG 6 cut(s) 59, 118, 177, 384, 501, 507
BstV2I GAAGAC 2 cut(s) 2369, 2670
BstX2I RGATCY 4 cut(s) 126, 489, 2464, 2891
BstXI CCANNNNNNTGG 2 cut(s) 1552, 1707
BstYI RGATCY 4 cut(s) 126, 489, 2464, 2891
Bsu36I CCTNAGG 2 cut(s) 716, 2015
BsuRI GGCC 5 cut(s) 638, 713, 741, 1283, 1695
BtgI CCRYGG 2 cut(s) 900, 1133
BtrI CACGTC 2 cut(s) 394, 607
BtsI GCAGTG 1 cut(s) 1841
BtsIMutI CAGTG 4 cut(s) 732, 1841, 2580, 2668
BveI ACCTGC 5 cut(s) 981, 1137, 1292, 2975, 2980
CaiI CAGNNNCTG 2 cut(s) 2582, 2942
CciI TCATGA 2 cut(s) 210, 2619
CfoI GCGC 4 cut(s) 386, 501, 503, 1921
Cfr10I RCCGGY 1 cut(s) 37
Cfr13I GGNCC 6 cut(s) 700, 712, 739, 1394, 1694, 2392
CseI GACGC 3 cut(s) 65, 124, 569
CsiI ACCWGGT 1 cut(s) 306
Csp6I GTAC 6 cut(s) 304, 1688, 2373, 2485, 2572, 2650
CviQI GTAC 6 cut(s) 304, 1688, 2373, 2485, 2572, 2650
DrdI GACNNNNNNGTC 1 cut(s) 203
DseDI GACNNNNNNGTC 1 cut(s) 203
Eam1104I CTCTTC 5 cut(s) 623, 1362, 1875, 2022, 2635
EarI CTCTTC 5 cut(s) 623, 1362, 1875, 2022, 2635
EciI GGCGGA 3 cut(s) 181, 211, 355
Ecl136II GAGCTC 3 cut(s) 148, 965, 1954
Eco105I TACGTA 1 cut(s) 2484
Eco130I CCWWGG 5 cut(s) 900, 1133, 1294, 1700, 1803
Eco147I AGGCCT 1 cut(s) 638
Eco24I GRGCYC 6 cut(s) 150, 967, 1630, 1774, 1811, 1956
Eco31I GGTCTC 2 cut(s) 2268, 2993
Eco47I GGWCC 3 cut(s) 700, 1394, 2392
Eco53kI GAGCTC 3 cut(s) 148, 965, 1954
Eco57I CTGAAG 2 cut(s) 862, 2616
Eco81I CCTNAGG 2 cut(s) 716, 2015
Eco88I CYCGRG 2 cut(s) 320, 359
EcoICRI GAGCTC 3 cut(s) 148, 965, 1954
EcoNI CCTNNNNNAGG 1 cut(s) 707
EcoO109I RGGNCCY 1 cut(s) 712
EcoRI GAATTC 2 cut(s) 871, 1289
EcoRII CCWGG 4 cut(s) 306, 638, 741, 1235
EcoT14I CCWWGG 5 cut(s) 900, 1133, 1294, 1700, 1803
EcoT38I GRGCYC 6 cut(s) 150, 967, 1630, 1774, 1811, 1956
ErhI CCWWGG 5 cut(s) 900, 1133, 1294, 1700, 1803
Esp3I CGTCTC 1 cut(s) 550
FalI AAGNNNNNCTT 2 cut(s) 785, 817
FaqI GGGAC 4 cut(s) 68, 469, 1196, 2701
FauI CCCGC 4 cut(s) 245, 380, 512, 638
FblI GTMKAC 3 cut(s) 312, 471, 2951
FriOI GRGCYC 6 cut(s) 150, 967, 1630, 1774, 1811, 1956
FspBI CTAG 8 cut(s) 51, 1295, 1767, 1979, 2168, 2249, 2418, 2819
GlaI GCGC 4 cut(s) 385, 500, 502, 1920
GsaI CCCAGC 2 cut(s) 499, 2672
GsuI CTGGAG 3 cut(s) 434, 1219, 1490
HaeIII GGCC 5 cut(s) 638, 713, 741, 1283, 1695
HapII CCGG 5 cut(s) 38, 295, 763, 848, 2527
HgaI GACGC 3 cut(s) 65, 124, 569
HhaI GCGC 4 cut(s) 386, 501, 503, 1921
Hin6I GCGC 4 cut(s) 384, 499, 501, 1919
HinP1I GCGC 4 cut(s) 384, 499, 501, 1919
HincII GTYRAC 4 cut(s) 155, 313, 472, 2952
HindII GTYRAC 4 cut(s) 155, 313, 472, 2952
HindIII AAGCTT 4 cut(s) 863, 933, 1087, 2751
HpaII CCGG 5 cut(s) 38, 295, 763, 848, 2527
HphI GGTGA 9 cut(s) 79, 394, 400, 515, 1234, 1289, 1723, 2348, 2972
Hpy166II GTNNAC 8 cut(s) 155, 313, 397, 472, 1151, 1231, 2574, 2952
Hpy8I GTNNAC 8 cut(s) 155, 313, 397, 472, 1151, 1231, 2574, 2952
HpyCH4III ACNGT 9 cut(s) 736, 959, 1187, 1376, 1618, 1764, 2035, 2205, 2584
HpyCH4IV ACGT 5 cut(s) 378, 393, 606, 690, 2483
HpySE526I ACGT 5 cut(s) 378, 393, 606, 690, 2483
HspAI GCGC 4 cut(s) 384, 499, 501, 1919
LguI GCTCTTC 2 cut(s) 1875, 2635
LmnI GCTCC 9 cut(s) 145, 153, 689, 962, 1121, 1555, 1850, 2091, 2356
LweI GCATC 8 cut(s) 93, 285, 827, 994, 1408, 1981, 2242, 2615
MabI ACCWGGT 1 cut(s) 306
MaeI CTAG 8 cut(s) 51, 1295, 1767, 1979, 2168, 2249, 2418, 2819
MaeII ACGT 5 cut(s) 378, 393, 606, 690, 2483
MaeIII GTNAC 4 cut(s) 730, 1743, 1891, 2960
MbiI CCGCTC 1 cut(s) 2359
MflI RGATCY 4 cut(s) 126, 489, 2464, 2891
MhlI GDGCHC 9 cut(s) 37, 150, 967, 1630, 1774, 1811, 1956, 2668, 2879
MmeI TCCRAC 5 cut(s) 285, 558, 711, 870, 2187
MroXI GAANNNNTTC 5 cut(s) 756, 875, 1109, 1155, 2142
MseI TTAA 7 cut(s) 1269, 1496, 1887, 2562, 2646, 2844, 2882
MslI CAYNNNNRTG 1 cut(s) 905
MspA1I CMGCKG 5 cut(s) 1017, 1037, 1434, 1487, 2939
MspI CCGG 5 cut(s) 38, 295, 763, 848, 2527
MspR9I CCNGG 7 cut(s) 296, 308, 640, 743, 764, 848, 1237
Mva1269I GAATGC 2 cut(s) 686, 837
MvaI CCWGG 4 cut(s) 308, 640, 743, 1237
MvnI CGCG 6 cut(s) 59, 118, 177, 384, 501, 507
NciI CCSGG 3 cut(s) 296, 764, 848
NcoI CCATGG 2 cut(s) 900, 1133
NlaIV GGNNCC 7 cut(s) 36, 1117, 1509, 1852, 2087, 2466, 2893
NmuCI GTSAC 3 cut(s) 730, 1891, 2960
NspI RCATGY 3 cut(s) 781, 2534, 2572
PaeI GCATGC 1 cut(s) 2534
PaeR7I CTCGAG 1 cut(s) 359
PagI TCATGA 2 cut(s) 210, 2619
PaqCI CACCTGC 1 cut(s) 1292
PauI GCGCGC 1 cut(s) 499
PceI AGGCCT 1 cut(s) 638
PciSI GCTCTTC 2 cut(s) 1875, 2635
PcsI WCGNNNNNNNCGW 4 cut(s) 192, 318, 582, 2489
PctI GAATGC 2 cut(s) 686, 837
PdmI GAANNNNTTC 5 cut(s) 756, 875, 1109, 1155, 2142
Pfl23II CGTACG 1 cut(s) 2484
PflMI CCANNNNNTGG 1 cut(s) 2475
Ppu21I YACGTR 1 cut(s) 2484
PshBI ATTAAT 1 cut(s) 1269
Psp124BI GAGCTC 3 cut(s) 150, 967, 1956
Psp6I CCWGG 4 cut(s) 306, 638, 741, 1235
PspFI CCCAGC 2 cut(s) 495, 2668
PspGI CCWGG 4 cut(s) 306, 638, 741, 1235
PspLI CGTACG 1 cut(s) 2484
PspN4I GGNNCC 7 cut(s) 36, 1117, 1509, 1852, 2087, 2466, 2893
PspPI GGNCC 6 cut(s) 700, 712, 739, 1394, 1694, 2392
PspXI VCTCGAGB 1 cut(s) 359
PstI CTGCAG 2 cut(s) 1732, 2986
PstNI CAGNNNCTG 2 cut(s) 2582, 2942
PsuI RGATCY 4 cut(s) 126, 489, 2464, 2891
PteI GCGCGC 1 cut(s) 499
PvuII CAGCTG 3 cut(s) 1434, 1487, 2939
RsaI GTAC 6 cut(s) 305, 1689, 2374, 2486, 2573, 2651
RsaNI GTAC 6 cut(s) 304, 1688, 2373, 2485, 2572, 2650
RseI CAYNNNNRTG 1 cut(s) 905
SacI GAGCTC 3 cut(s) 150, 967, 1956
SalI GTCGAC 3 cut(s) 311, 470, 2950
SapI GCTCTTC 2 cut(s) 1875, 2635
SaqAI TTAA 7 cut(s) 1269, 1496, 1887, 2562, 2646, 2844, 2882
Sau96I GGNCC 6 cut(s) 700, 712, 739, 1394, 1694, 2392
ScaI AGTACT 2 cut(s) 1689, 2374
ScrFI CCNGG 7 cut(s) 296, 308, 640, 743, 764, 848, 1237
SduI GDGCHC 9 cut(s) 37, 150, 967, 1630, 1774, 1811, 1956, 2668, 2879
SexAI ACCWGGT 1 cut(s) 306
SfaNI GCATC 8 cut(s) 93, 285, 827, 994, 1408, 1981, 2242, 2615
SfcI CTRYAG 2 cut(s) 1728, 2982
Sfr274I CTCGAG 1 cut(s) 359
SgrAI CRCCGGYG 1 cut(s) 37
SinI GGWCC 3 cut(s) 700, 1394, 2392
SlaI CTCGAG 1 cut(s) 359
SmiMI CAYNNNNRTG 1 cut(s) 905
SmlI CTYRAG 7 cut(s) 359, 1100, 1250, 1398, 2265, 2305, 2800
SmoI CTYRAG 7 cut(s) 359, 1100, 1250, 1398, 2265, 2305, 2800
SnaBI TACGTA 1 cut(s) 2484
SphI GCATGC 1 cut(s) 2534
SseBI AGGCCT 1 cut(s) 638
SspI AATATT 1 cut(s) 1267
SspMI CTAG 8 cut(s) 51, 1295, 1767, 1979, 2168, 2249, 2418, 2819
SstI GAGCTC 3 cut(s) 150, 967, 1956
StuI AGGCCT 1 cut(s) 638
StyD4I CCNGG 7 cut(s) 294, 306, 638, 741, 762, 846, 1235
StyI CCWWGG 5 cut(s) 900, 1133, 1294, 1700, 1803
TaaI ACNGT 9 cut(s) 736, 959, 1187, 1376, 1618, 1764, 2035, 2205, 2584
TaiI ACGT 5 cut(s) 381, 396, 609, 693, 2486
TaqII GACCGA 1 cut(s) 688
TatI WGTACW 3 cut(s) 1687, 2372, 2571
TauI GCSGC 5 cut(s) 44, 47, 371, 837, 1020
Tru1I TTAA 7 cut(s) 1269, 1496, 1887, 2562, 2646, 2844, 2882
Tru9I TTAA 7 cut(s) 1269, 1496, 1887, 2562, 2646, 2844, 2882
TscAI CASTG 4 cut(s) 739, 1848, 2587, 2668
TseFI GTSAC 3 cut(s) 730, 1891, 2960
Tsp45I GTSAC 3 cut(s) 730, 1891, 2960
TspGWI ACGGA 4 cut(s) 140, 259, 297, 2117
TspRI CASTG 4 cut(s) 739, 1848, 2587, 2668
Van91I CCANNNNNTGG 1 cut(s) 2475
VpaK11BI GGWCC 3 cut(s) 700, 1394, 2392
VspI ATTAAT 1 cut(s) 1269
XagI CCTNNNNNAGG 1 cut(s) 707
XapI RAATTY 3 cut(s) 871, 1289, 2189
XbaI TCTAGA 3 cut(s) 1766, 1978, 2248
XceI RCATGY 3 cut(s) 781, 2534, 2572
XcmI CCANNNNNNNNNTGG 1 cut(s) 907
XhoI CTCGAG 1 cut(s) 359
XmaJI CCTAGG 1 cut(s) 1294
XmiI GTMKAC 3 cut(s) 312, 471, 2951
XmnI GAANNNNTTC 5 cut(s) 756, 875, 1109, 1155, 2142
XspI CTAG 8 cut(s) 51, 1295, 1767, 1979, 2168, 2249, 2418, 2819
ZrmI AGTACT 2 cut(s) 1689, 2374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.