Rorug07G0198700

Conserved oligomeric Golgi complex subunit 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0005295
Physical Location & Seq
Forward (+)
17211544 .. 17216997
5454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0198700.1

Sequence Viewer

Length: 1344 bp
ATGACGACGAGGACGAATTTCTACAAGAACCCTTCCATTACTTACAAGAAGGACCTCAGTCTCTCCTCCGTTCTTCAAAACCTCCAAGCTTACAACATCGCCACCGGCAATGCTCCGCCTCCCGAAGAACAACATCCTCCACCAGCCGCCGATGCCAAAACGGCAGGTCGTAAACGCCAGCGCGATCCAAAACCGCCGCCGCCGCCGCCTTGTGGCGGGAAGCGTGAAATTGAAGAGCGCGACGGACCTATGTCGCACCAGGATTACGTAGACAAGAGAAGAAAAGAAGCTTCTGCAACGCCAGCTTTTGAAGAATTAACTGCCGATGTTTTGGGAAAGCAGGGAACTTCGAATTCGTGTTTAAATTTGGTACAGTATGACAGTGATGAGAGTAGTTCTTCAGAATGTGAAGAGAAGCAGCATGATCCTCCAAATTCTGTTCACAGGAATGAATCTGATGGAGTAAAGAGCAGAAGTGAACAGCGTTTGCCTCACCCAGGCGAACCTGTTTGTGTAATGTGTGGTAAATACGGAGAATATATATGCAACGAGACGGATGACGACATCTGCAGCATGGAGTGCAAAGCTGAGTTACTGGACGCTCTCAAAGTTGTCAAGGATCCATTAAGCAATGAAAGACCAGATGTCTCCTCATCCGGGCCCAACTATACCTTACCCATGCCTGATTTTGGTGAAGACACTTGGGATTATGAACGTCATCGCTGGTCGAAGAAGACTTCCAGTCTTTGTACTTATGAATGCTGGAAATGCAAGAGGCCTGGACACCTTGCTCAAGATTGTTTGGTGATGACAAATAACCAGATGAAATTGGGCCAAAGCAATTCCAATTCAATACCAGCGGACCTTCTTGCGTTGTACAGAAGATGCCACCAGATAGGAAAAAACATGTCAGTGGCAAAGTGCAGCGAATGCTACAGCTCATTAAGTTTGGCTACATGCCTTGATTGTAGGACTGCCCTCTGTGACAATGCAGGTCATTTGCATGAGCATATACAGAGACATACATCCCATCAACGATATTATTCTCATAAACTCTCTCGTCTGGTGAAATGCTGTAAATCAACATGCAAGGTGACTGACATCAAGGATCTTTTGGCATGCCAGTACTGTTTCGATAAAGCTTTTGATAAGTTCTATGACATGTATACTGCATCTTGGAAAGGAACTGGTCTTTCAATCATATCAGGTTCTATTTGCTGTGAAGATCACTTTGATTGGCATCGTATGAACTGTTTCAACGCTGGTGTGGAAGACAGTGCATATATTATCAGTAGGACACCCTTGAGAGAGAAGCATATTCAGCTTAGTGACTTCATCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Vps51

Protein Analysis

447

Amino Acids

50.49

Weight (kDa)

6.39

Isoelectric Point (pI)

56.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-HIT PF04438 168 - 195 2.5e-06 HIT zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 155, 983
AccI GTMKAC 2 cut(s) 270, 1166
AccII CGCG 2 cut(s) 183, 240
AciI CCGC 9 cut(s) 116, 147, 194, 197, 200, 203, 206, 216, 860
AclWI GGATC 5 cut(s) 179, 419, 614, 627, 1116
AcsI RAATTY 4 cut(s) 16, 352, 364, 433
AcuI CTGAAG 1 cut(s) 384
AfaI GTAC 4 cut(s) 372, 751, 878, 1127
AfiI CCNNNNNNNGG 5 cut(s) 212, 215, 497, 657, 689
AflIII ACRYGT 2 cut(s) 906, 1161
AgsI TTSAA 6 cut(s) 77, 233, 311, 852, 1197, 1258
AhdI GACNNNNNGTC 2 cut(s) 644, 741
AjnI CCWGG 3 cut(s) 258, 496, 778
AluBI AGCT 7 cut(s) 89, 290, 305, 587, 939, 1142, 1324
AluI AGCT 7 cut(s) 89, 290, 305, 587, 939, 1142, 1324
Alw26I GTCTC 4 cut(s) 65, 545, 652, 1012
AlwI GGATC 5 cut(s) 179, 419, 614, 627, 1116
AoxI GGCC 3 cut(s) 659, 776, 832
ApaI GGGCCC 1 cut(s) 663
ApeKI GCWGC 3 cut(s) 418, 570, 924
ApoI RAATTY 4 cut(s) 16, 352, 364, 433
Asp700I GAANNNNTTC 1 cut(s) 1253
AspLEI GCGC 2 cut(s) 183, 240
AspS9I GGNCC 6 cut(s) 52, 245, 659, 660, 832, 862
AsuC2I CCSGG 1 cut(s) 658
AsuHPI GGTGA 5 cut(s) 485, 704, 817, 1078, 1105
AsuII TTCGAA 1 cut(s) 350
AvaII GGWCC 3 cut(s) 52, 245, 862
BaeGI GKGCMC 1 cut(s) 663
BamHI GGATCC 1 cut(s) 619
BanII GRGCYC 1 cut(s) 663
BbsI GAAGAC 3 cut(s) 702, 740, 1278
BbvI GCAGC 3 cut(s) 430, 582, 936
BccI CCATC 2 cut(s) 452, 1038
BceAI ACGGC 1 cut(s) 177
BciT130I CCWGG 3 cut(s) 260, 498, 780
BcnI CCSGG 1 cut(s) 658
BcoDI GTCTC 4 cut(s) 65, 545, 652, 1012
BfmI CTRYAG 2 cut(s) 568, 934
BfuAI ACCTGC 2 cut(s) 155, 983
BglI GCCNNNNNGGC 1 cut(s) 161
BisI GCNGC 8 cut(s) 147, 197, 200, 203, 206, 419, 571, 925
BlsI GCNGC 8 cut(s) 148, 198, 201, 204, 207, 420, 572, 926
BmcAI AGTACT 1 cut(s) 1127
Bme1390I CCNGG 4 cut(s) 260, 498, 658, 780
Bme18I GGWCC 3 cut(s) 52, 245, 862
BmeRI GACNNNNNGTC 2 cut(s) 644, 741
BmgT120I GGNCC 6 cut(s) 52, 245, 659, 660, 832, 862
BmiI GGNNCC 2 cut(s) 621, 661
BmrFI CCNGG 4 cut(s) 260, 498, 658, 780
BmsI GCATC 4 cut(s) 142, 875, 1181, 1249
BoxI GACNNNNGTC 2 cut(s) 57, 250
BpiI GAAGAC 3 cut(s) 702, 740, 1278
Bpu14I TTCGAA 1 cut(s) 350
BpuEI CTTGAG 2 cut(s) 777, 1324
BpuMI CCSGG 1 cut(s) 658
BsaAI YACGTR 1 cut(s) 268
BsaBI GATNNNNATC 1 cut(s) 1239
BsaJI CCNNGG 1 cut(s) 496
Bsc4I CCNNNNNNNGG 5 cut(s) 212, 215, 497, 657, 689
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 4 cut(s) 600, 741, 1123, 1192
Bse3DI GCAATG 2 cut(s) 115, 637
Bse8I GATNNNNATC 1 cut(s) 1239
BseBI CCWGG 3 cut(s) 260, 498, 780
BseDI CCNNGG 1 cut(s) 496
BseGI GGATG 4 cut(s) 133, 562, 653, 1025
BseJI GATNNNNATC 1 cut(s) 1239
BseLI CCNNNNNNNGG 5 cut(s) 212, 215, 497, 657, 689
BseMI GCAATG 2 cut(s) 115, 637
BseMII CTCAG 2 cut(s) 70, 579
BseNI ACTGG 4 cut(s) 600, 741, 1123, 1192
BseRI GAGGAG 2 cut(s) 55, 640
BseSI GKGCMC 1 cut(s) 663
BseXI GCAGC 3 cut(s) 430, 582, 936
BsgI GTGCAG 1 cut(s) 943
Bsh1236I CGCG 2 cut(s) 183, 240
BshFI GGCC 3 cut(s) 661, 778, 834
BsiSI CCGG 2 cut(s) 105, 657
BslI CCNNNNNNNGG 5 cut(s) 212, 215, 497, 657, 689
BsmAI GTCTC 4 cut(s) 65, 545, 652, 1012
BsmBI CGTCTC 1 cut(s) 545
BsmI GAATGC 2 cut(s) 764, 935
BsnI GGCC 3 cut(s) 661, 778, 834
Bsp119I TTCGAA 1 cut(s) 350
Bsp120I GGGCCC 1 cut(s) 659
Bsp1286I GDGCHC 1 cut(s) 663
Bsp1407I TGTACA 1 cut(s) 876
Bsp143I GATC 5 cut(s) 184, 424, 619, 1108, 1225
BspACI CCGC 9 cut(s) 116, 147, 194, 197, 200, 203, 206, 216, 860
BspANI GGCC 3 cut(s) 661, 778, 834
BspCNI CTCAG 2 cut(s) 69, 580
BspFNI CGCG 2 cut(s) 183, 240
BspLI GGNNCC 2 cut(s) 621, 661
BspMAI CTGCAG 1 cut(s) 572
BspMI ACCTGC 2 cut(s) 155, 983
BspPI GGATC 5 cut(s) 179, 419, 614, 627, 1116
BspQI GCTCTTC 1 cut(s) 228
BspT104I TTCGAA 1 cut(s) 350
BsrDI GCAATG 2 cut(s) 115, 637
BsrFI RCCGGY 1 cut(s) 104
BsrGI TGTACA 1 cut(s) 876
BsrI ACTGG 4 cut(s) 600, 741, 1123, 1192
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 496
BssMI GATC 5 cut(s) 184, 424, 619, 1108, 1225
BssNAI GTATAC 1 cut(s) 1167
Bst1107I GTATAC 1 cut(s) 1167
Bst2UI CCWGG 3 cut(s) 260, 498, 780
Bst4CI ACNGT 5 cut(s) 375, 383, 1130, 1253, 1277
Bst6I CTCTTC 2 cut(s) 228, 405
BstAPI GCANNNNNTGC 2 cut(s) 579, 930
BstAUI TGTACA 1 cut(s) 876
BstBAI YACGTR 1 cut(s) 268
BstBI TTCGAA 1 cut(s) 350
BstC8I GCNNGC 3 cut(s) 179, 303, 1120
BstDEI CTNAG 3 cut(s) 56, 588, 1325
BstENI CCTNNNNNAGG 1 cut(s) 495
BstF5I GGATG 4 cut(s) 133, 562, 653, 1025
BstFNI CGCG 2 cut(s) 183, 240
BstHHI GCGC 2 cut(s) 183, 240
BstKTI GATC 5 cut(s) 187, 427, 622, 1111, 1228
BstMAI GTCTC 4 cut(s) 65, 545, 652, 1012
BstMBI GATC 5 cut(s) 184, 424, 619, 1108, 1225
BstMWI GCNNNNNNNGC 9 cut(s) 152, 161, 202, 205, 302, 579, 768, 930, 1321
BstNI CCWGG 3 cut(s) 260, 498, 780
BstNSI RCATGY 5 cut(s) 910, 960, 1089, 1122, 1165
BstPAI GACNNNNGTC 2 cut(s) 57, 250
BstSCI CCNGG 4 cut(s) 258, 496, 656, 778
BstSFI CTRYAG 2 cut(s) 568, 934
BstSLI GKGCMC 1 cut(s) 663
BstSNI TACGTA 1 cut(s) 268
BstUI CGCG 2 cut(s) 183, 240
BstV1I GCAGC 3 cut(s) 430, 582, 936
BstV2I GAAGAC 3 cut(s) 702, 740, 1278
BstX2I RGATCY 2 cut(s) 619, 1108
BstYI RGATCY 2 cut(s) 619, 1108
BstZ17I GTATAC 1 cut(s) 1167
BsuRI GGCC 3 cut(s) 661, 778, 834
BtgZI GCGATG 2 cut(s) 82, 704
BtsCI GGATG 4 cut(s) 133, 562, 653, 1025
BtsIMutI CAGTG 3 cut(s) 388, 918, 1282
BveI ACCTGC 2 cut(s) 155, 983
Cac8I GCNNGC 3 cut(s) 179, 303, 1120
CfoI GCGC 2 cut(s) 183, 240
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 6 cut(s) 52, 245, 659, 660, 832, 862
CseI GACGC 1 cut(s) 608
Csp6I GTAC 4 cut(s) 371, 750, 877, 1126
CviAII CATG 9 cut(s) 422, 574, 679, 907, 957, 1004, 1086, 1119, 1162
CviQI GTAC 4 cut(s) 371, 750, 877, 1126
DdeI CTNAG 3 cut(s) 56, 588, 1325
DpnI GATC 5 cut(s) 186, 426, 621, 1110, 1227
DpnII GATC 5 cut(s) 184, 424, 619, 1108, 1225
DraI TTTAAA 1 cut(s) 363
DriI GACNNNNNGTC 2 cut(s) 644, 741
Eam1104I CTCTTC 2 cut(s) 228, 405
Eam1105I GACNNNNNGTC 2 cut(s) 644, 741
EarI CTCTTC 2 cut(s) 228, 405
EciI GGCGGA 1 cut(s) 105
Eco105I TACGTA 1 cut(s) 268
Eco147I AGGCCT 1 cut(s) 778
Eco24I GRGCYC 1 cut(s) 663
Eco47I GGWCC 3 cut(s) 52, 245, 862
Eco57I CTGAAG 1 cut(s) 384
EcoNI CCTNNNNNAGG 1 cut(s) 495
EcoO109I RGGNCCY 1 cut(s) 52
EcoRI GAATTC 1 cut(s) 352
EcoRII CCWGG 3 cut(s) 258, 496, 778
EcoT38I GRGCYC 1 cut(s) 663
Esp3I CGTCTC 1 cut(s) 545
FaeI CATG 9 cut(s) 425, 577, 682, 910, 960, 1007, 1089, 1122, 1165
FatI CATG 9 cut(s) 421, 573, 678, 906, 956, 1003, 1085, 1118, 1161
FauI CCCGC 1 cut(s) 209
FblI GTMKAC 2 cut(s) 270, 1166
Fnu4HI GCNGC 8 cut(s) 147, 197, 200, 203, 206, 419, 571, 925
FokI GGATG 4 cut(s) 120, 569, 640, 1012
FriOI GRGCYC 1 cut(s) 663
Fsp4HI GCNGC 8 cut(s) 147, 197, 200, 203, 206, 419, 571, 925
GlaI GCGC 2 cut(s) 182, 239
GluI GCNGC 8 cut(s) 147, 197, 200, 203, 206, 419, 571, 925
HaeIII GGCC 3 cut(s) 661, 778, 834
HapII CCGG 2 cut(s) 105, 657
HgaI GACGC 1 cut(s) 608
HhaI GCGC 2 cut(s) 183, 240
Hin1II CATG 9 cut(s) 425, 577, 682, 910, 960, 1007, 1089, 1122, 1165
Hin6I GCGC 2 cut(s) 181, 238
HinP1I GCGC 2 cut(s) 181, 238
HindIII AAGCTT 3 cut(s) 87, 288, 1140
HinfI GANTC 1 cut(s) 452
HpaII CCGG 2 cut(s) 105, 657
HphI GGTGA 5 cut(s) 485, 704, 817, 1078, 1105
Hpy166II GTNNAC 5 cut(s) 173, 271, 442, 479, 1167
Hpy188I TCNGA 3 cut(s) 403, 457, 1343
Hpy188III TCNNGA 2 cut(s) 122, 794
Hpy8I GTNNAC 5 cut(s) 173, 271, 442, 479, 1167
Hpy99I CGWCG 2 cut(s) 10, 245
HpyAV CCTTC 3 cut(s) 42, 43, 875
HpyCH4III ACNGT 5 cut(s) 375, 383, 1130, 1253, 1277
HpyCH4IV ACGT 2 cut(s) 267, 715
HpyF10VI GCNNNNNNNGC 9 cut(s) 152, 161, 202, 205, 302, 579, 768, 930, 1321
HpyF3I CTNAG 3 cut(s) 56, 588, 1325
HpySE526I ACGT 2 cut(s) 267, 715
Hsp92II CATG 9 cut(s) 425, 577, 682, 910, 960, 1007, 1089, 1122, 1165
HspAI GCGC 2 cut(s) 181, 238
Kzo9I GATC 5 cut(s) 184, 424, 619, 1108, 1225
LguI GCTCTTC 1 cut(s) 228
LmnI GCTCC 1 cut(s) 118
Lsp1109I GCAGC 3 cut(s) 430, 582, 936
LweI GCATC 4 cut(s) 142, 875, 1181, 1249
MaeII ACGT 2 cut(s) 267, 715
MaeIII GTNAC 4 cut(s) 591, 983, 1093, 1328
MalI GATC 5 cut(s) 186, 426, 621, 1110, 1227
MboI GATC 5 cut(s) 184, 424, 619, 1108, 1225
MflI RGATCY 2 cut(s) 619, 1108
MhlI GDGCHC 1 cut(s) 663
MluCI AATT 9 cut(s) 16, 228, 314, 352, 364, 433, 827, 841, 847
MroXI GAANNNNTTC 1 cut(s) 1253
MseI TTAA 4 cut(s) 317, 362, 626, 944
MslI CAYNNNNRTG 3 cut(s) 447, 911, 1002
MspA1I CMGCKG 1 cut(s) 860
MspI CCGG 2 cut(s) 105, 657
MspR9I CCNGG 4 cut(s) 260, 498, 658, 780
Mva1269I GAATGC 2 cut(s) 764, 935
MvaI CCWGG 3 cut(s) 260, 498, 780
MvnI CGCG 2 cut(s) 183, 240
MwoI GCNNNNNNNGC 9 cut(s) 152, 161, 202, 205, 302, 579, 768, 930, 1321
NciI CCSGG 1 cut(s) 658
NdeII GATC 5 cut(s) 184, 424, 619, 1108, 1225
NlaIII CATG 9 cut(s) 425, 577, 682, 910, 960, 1007, 1089, 1122, 1165
NlaIV GGNNCC 2 cut(s) 621, 661
NmuCI GTSAC 3 cut(s) 983, 1093, 1328
NspI RCATGY 5 cut(s) 910, 960, 1089, 1122, 1165
NspV TTCGAA 1 cut(s) 350
PaeI GCATGC 1 cut(s) 1122
PceI AGGCCT 1 cut(s) 778
PciI ACATGT 2 cut(s) 906, 1161
PciSI GCTCTTC 1 cut(s) 228
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PctI GAATGC 2 cut(s) 764, 935
PdmI GAANNNNTTC 1 cut(s) 1253
PfeI GAWTC 1 cut(s) 452
PkrI GCNGC 8 cut(s) 148, 198, 201, 204, 207, 420, 572, 926
Ppu21I YACGTR 1 cut(s) 268
PpuMI RGGWCCY 1 cut(s) 52
PscI ACATGT 2 cut(s) 906, 1161
PshAI GACNNNNGTC 2 cut(s) 57, 250
Psp5II RGGWCCY 1 cut(s) 52
Psp6I CCWGG 3 cut(s) 258, 496, 778
PspGI CCWGG 3 cut(s) 258, 496, 778
PspN4I GGNNCC 2 cut(s) 621, 661
PspOMI GGGCCC 1 cut(s) 659
PspPI GGNCC 6 cut(s) 52, 245, 659, 660, 832, 862
PspPPI RGGWCCY 1 cut(s) 52
PstI CTGCAG 1 cut(s) 572
PsuI RGATCY 2 cut(s) 619, 1108
RsaI GTAC 4 cut(s) 372, 751, 878, 1127
RsaNI GTAC 4 cut(s) 371, 750, 877, 1126
RseI CAYNNNNRTG 3 cut(s) 447, 911, 1002
SapI GCTCTTC 1 cut(s) 228
SaqAI TTAA 4 cut(s) 317, 362, 626, 944
SatI GCNGC 8 cut(s) 147, 197, 200, 203, 206, 419, 571, 925
Sau3AI GATC 5 cut(s) 184, 424, 619, 1108, 1225
Sau96I GGNCC 6 cut(s) 52, 245, 659, 660, 832, 862
ScaI AGTACT 1 cut(s) 1127
ScrFI CCNGG 4 cut(s) 260, 498, 658, 780
SduI GDGCHC 1 cut(s) 663
SfaNI GCATC 4 cut(s) 142, 875, 1181, 1249
SfcI CTRYAG 2 cut(s) 568, 934
SfuI TTCGAA 1 cut(s) 350
SinI GGWCC 3 cut(s) 52, 245, 862
SmiMI CAYNNNNRTG 3 cut(s) 447, 911, 1002
SmlI CTYRAG 2 cut(s) 792, 1303
SmoI CTYRAG 2 cut(s) 792, 1303
SnaBI TACGTA 1 cut(s) 268
SphI GCATGC 1 cut(s) 1122
Sse9I AATT 9 cut(s) 16, 228, 314, 352, 364, 433, 827, 841, 847
SseBI AGGCCT 1 cut(s) 778
SsiI CCGC 9 cut(s) 116, 147, 194, 197, 200, 203, 206, 216, 860
StuI AGGCCT 1 cut(s) 778
StyD4I CCNGG 4 cut(s) 258, 496, 656, 778
TaaI ACNGT 5 cut(s) 375, 383, 1130, 1253, 1277
TaiI ACGT 2 cut(s) 270, 718
TaqI TCGA 3 cut(s) 350, 728, 1134
TasI AATT 9 cut(s) 16, 228, 314, 352, 364, 433, 827, 841, 847
TatI WGTACW 3 cut(s) 749, 876, 1125
TauI GCSGC 5 cut(s) 149, 199, 202, 205, 208
TfiI GAWTC 1 cut(s) 452
Tru1I TTAA 4 cut(s) 317, 362, 626, 944
Tru9I TTAA 4 cut(s) 317, 362, 626, 944
TscAI CASTG 3 cut(s) 388, 918, 1282
TseFI GTSAC 3 cut(s) 983, 1093, 1328
TseI GCWGC 3 cut(s) 418, 570, 924
Tsp45I GTSAC 3 cut(s) 983, 1093, 1328
TspDTI ATGAA 7 cut(s) 465, 648, 726, 771, 839, 1262, 1324
TspGWI ACGGA 4 cut(s) 58, 258, 546, 569
TspRI CASTG 3 cut(s) 388, 918, 1282
VpaK11BI GGWCC 3 cut(s) 52, 245, 862
XagI CCTNNNNNAGG 1 cut(s) 495
XapI RAATTY 4 cut(s) 16, 352, 364, 433
XceI RCATGY 5 cut(s) 910, 960, 1089, 1122, 1165
XmiI GTMKAC 2 cut(s) 270, 1166
XmnI GAANNNNTTC 1 cut(s) 1253
ZrmI AGTACT 1 cut(s) 1127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.