MD08G1237500.v1.1

Conserved oligomeric Golgi complex subunit 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0005295
Physical Location & Seq
Reverse (-)
30479366 .. 30484888
5523 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1237500.v1.1.491

Sequence Viewer

Length: 3084 bp
ATGAGAGTTAATTCCGGCGATGCCCTCAGCAGCGCCGCCACCACTTCCTTCGCCACTGCAGCCGCCGCTTCCCGAGATGCCGAATCCCTCTTCCGCTCCAAACCCATTTCCGAGATCCGCGCCGTCGAGTCCACCACCCGCACCCAGATCCAGTCCAAGAAGGAGGAGCTCCGCCAACTCGTCGGCACACGCTACCGCGATCTCATCGACTCCGCCGATTCCATCGTCCTCATGAAGCGCTCCTCCCACTCCATCTCCCAAAACCTCTCTTCCGTCCACACCTCCATCAATTCCCTCTCCTCCGCCTCCTCCGCCTCCCCTCCCGATCCCTCCCGCCACGACCCGACCCGCCACCGCATCTATGGCATTGCCTGCCGAGTCAAGTACCTCGTTGACACTCCCGAGAACATCTGGGGCTGCCTCGACGAGTCCATGTTTCTCGAGTCCGCCGCGCGCTACGTCCGCGCCAGCCACGTGCACTCCATCCTCGCCCTCCCCGGTCAGGTGTGCTTCCTCTCCAACTTCCCTCTCCTCCAGCACCAGTGGCAGATCGTCGACAGCTTCAAGTCCCAGATCTCTCAGCGCGCCCGCGACCGCCTCTTCGATCGAGAGCTCCGATTGCCCATCTCCTCCTACGCCGACGCCTTGGCCGCCGTCGCTTTGATCGACGACCTCCGGCCCGAGCACGTCCTCTCCCTCTTCCTCGACAGTCGCAAGTCGTGGGTTTCCGGGATACTCAACGCTTGTCGTCCCGATGCTCAGTGCTCCGACGTCGTTTCAGTGCTGTGCGAGGCTCTGAGGGTGATTCAGGTGACTGTGGGGCAGGTTGGGGAGCTCTTCTTGCGGGTGTTGAACGACATGCCGTTGTTCTACAAGGTGGTGTTGGGTTGCCCTCCTGCATCCCAACTGTTCGGTGGAATTCCCAATCCAGATGAGGAGGTCAAGCTTTGGAATTCGTTTCGGGAGAAGCTCGAGTCCGCCATGGGAATGCTGGACAAGAATTACATTGCCAATGCTTGTTGCTCTTGGCTTAACGACTGCGGAGGCCAGATGGTAGATAGGATCAACGGGCGGTTCCTCATCGATGCAATTGGCAGCGGCCATGAGCTCGCCTCGGCTGAGAAATTGATTAGGGAGACGATGAACAGCAAAGAGGTATTAGAAGGGAGCTTGGAGTGGCTTAAGAACGTTTTCGGGTCTAACATTGACCTGCCATGGAGTAGAATGAGTGAACTTGTTCTCGGAGATGATTCAGATCTCTGGGACAGTATCTTCGAACCTGCATTTGTTGCCAGGATGAAGGTGATTGTGGCATACAGGTTCGAGGATCTCATGAAGGCGGTGAACATTAAGGATGGTGAACCCATTGATTTCCTTGGTGCTGGTGGTGGAGTTTGGTTTGTAGAAACCAAATCGAATAATGCTAAGAAAGGTACTACTAGTGCTTTGCCTTGTGAAGAGAATTGTCTCAATTTCTATTTTGGTCCTCAAGTGAGTGGAATTCGGGATGCCGTGGATAGTAGCTGTAAGGATGTTCTTGATGACTTGCTGTGTTTCTTAGAATCGCCAAAGGCAGCTCTTAGGTTAAAGGATCTGGCACCGTATCTACAAGATAAGTGTTGCCTGACCATATCCAATATATTGGTGCAACTGAATAGTGAGCTTGATAATTTGGAAATTGGCAAAGACACGCAAGGGCCAATAACCGTTGACAGGGCACTTTTCATTGGGAGACTCCTGTTTGCATTGCAGAGCCACTCCAAACACATCCCCATCATTCTTGGCCCTCCAAGGTCTTGGGTAAACGTAACAGGTTCTGTAGTTTTCGATAAGTTCCCAGCCATGTCAAGACAATCTAGAGCTCCCACGGATTCTCCGGTTCTTGATAGCCCCTCAGGTTCTAAAAGGCACACTTCATCTGCTACTGCTGCATTGCTTGGAGCCAGCCAAAGTGCAAGCCCTAAATTTGAAGAGCTTAATTCAACTATGAAAGATCTCCGCATCCGAGCGCATGGTTTGTGGATGTCGTGGTTGTCCGATGAGCTTTCAGTTATTCTTTCCCGTGATCTTCAAAAAGATTATGCTTTGTCATCATCAACACCTCTGAGGGGTTGGGAAGAGACTGTTGTTAAGCAAGAGCAGTCTGATGATAACCAATCAGACATGAGAATATGGCTCCCATGCATGCCTTCTCTCTATATAGTCTCATTTCTATTTCGTATATGTGAAGAAGTTCATCGAATTGGAGGTCATGTTCTTGACAAAACAATTCTGCAAAAGTTTGCATTAAGATTGTTGGAAAAGGTCATTGGTATTTATGGGGACTTCCTTTCTACAATAGAGGCTGGTGGATCTCAAGTGTCCGAGAAAGGAATTTTGCAAGTTCTGTTAGATTTGAGATTTGTTGTTGATGTCCTTTCTGGGGGTGATTCTAATCCGAGTGAGGAGTCATCTGTATACCTAAAGACAAAAAGTCCTTTCAGACGGAAGCAGGACCAAAGCCACGTGAAATCTGCCATTAGAGAGCGTTTTGATGGGTTGATAAATCGTCTTTCGCAAAGATTGGATCCCATAGACTGGCTTACGTATGAGCCGTATCTTTGGGAAAATGAGAAGCAGTCCTACCAACGCCATGCTGTCCTCTTTGGATTCTTTGTTCAACTTAATCGCATGTACACAGATACTGTTCAAAAACTTCCTACTAATTCGGAATCCAATATCATGAGATGCTCTTCAGTTCCTCGCTTCAAATACCTTCCAATCAGTGCTCCAGCATTGTCTTCTAGAGGGACAGCTAAGGCATCCATTCCAACCTCTTCGGACGATATTTCTTCAAGAAGTCCCTGGAAGGCTTATACAAATGGAGAGCTTTCTAGCAAGCTTGATTTGGACAATAACGCGAGTTTTTCTGCAGCTGGAAGTAAATTCGGAGAGAGCTTAAAACTAGGATCCATGCTAACAGATGGGCAAGTGGGCATATTCAAGGATAGATCAGCGGCTGCCATGTCGTCAATTGGTGACATTCTACCTTCCCAGGCTGCAGGTCTTCTATCATCGTTCACAGCTTCCAGATCATACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Vps51

Protein Analysis

1028

Amino Acids

113.71

Weight (kDa)

6.1

Isoelectric Point (pI)

50.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VPS51_Exo84_N PF08700 24 - 101 9.2e-17 Vps51/EXO84/COG1 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 774
Acc36I ACCTGC 4 cut(s) 814, 1218, 1288, 3032
AccB1I GGYRCC 1 cut(s) 1597
AccB7I CCANNNNNTGG 1 cut(s) 2577
AccBSI CCGCTC 1 cut(s) 96
AccI GTMKAC 2 cut(s) 555, 2457
AccII CGCG 8 cut(s) 120, 198, 452, 454, 465, 585, 591, 2900
AclI AACGTT 1 cut(s) 1188
AcoI YGGCCR 2 cut(s) 648, 1099
AcsI RAATTY 6 cut(s) 918, 952, 1500, 1964, 2373, 2924
AcuI CTGAAG 1 cut(s) 2718
AcvI CACGTG 2 cut(s) 475, 2506
AcyI GRCGYC 2 cut(s) 642, 771
AfaI GTAC 3 cut(s) 386, 1435, 2675
AfeI AGCGCT 1 cut(s) 239
AfiI CCNNNNNNNGG 5 cut(s) 502, 1713, 2108, 2422, 2577
AflII CTTAAG 1 cut(s) 1181
AhdI GACNNNNNGTC 1 cut(s) 2472
AhlI ACTAGT 1 cut(s) 1439
AjiI CACGTC 1 cut(s) 688
AjnI CCWGG 3 cut(s) 1292, 2843, 3033
AjuI GAANNNNNNNTTGG 2 cut(s) 2292, 2324
AloI GAACNNNNNNTCC 4 cut(s) 2238, 2270, 2640, 2672
Alw21I GWGCWC 9 cut(s) 171, 480, 615, 687, 767, 837, 1110, 1864, 2770
Alw26I GTCTC 5 cut(s) 1130, 1472, 1726, 2114, 2209
Alw44I GTGCAC 1 cut(s) 476
AlwNI CAGNNNCTG 3 cut(s) 1817, 2684, 2999
Ama87I CYCGRG 5 cut(s) 72, 401, 440, 680, 971
Aor51HI AGCGCT 1 cut(s) 239
AoxI GGCC 6 cut(s) 648, 677, 1045, 1099, 1697, 1783
ApaLI GTGCAC 1 cut(s) 476
ApeKI GCWGC 9 cut(s) 30, 59, 417, 1095, 1574, 1928, 2912, 2999, 3038
ApoI RAATTY 6 cut(s) 918, 952, 1500, 1964, 2373, 2924
ArsI GACNNNNNNTTYG 6 cut(s) 584, 616, 1256, 1288, 2233, 2265
Asp700I GAANNNNTTC 3 cut(s) 1190, 1236, 2232
AspLEI GCGC 9 cut(s) 35, 122, 240, 454, 456, 467, 585, 587, 2011
AspS9I GGNCC 5 cut(s) 678, 1484, 1697, 1784, 2494
AsuC2I CCSGG 2 cut(s) 498, 730
AsuHPI GGTGA 7 cut(s) 814, 823, 1315, 1354, 1370, 2438, 3029
AsuII TTCGAA 1 cut(s) 1275
AvaI CYCGRG 5 cut(s) 72, 401, 440, 680, 971
AvaII GGWCC 2 cut(s) 1484, 2494
AxyI CCTNAGG 1 cut(s) 1894
BaeGI GKGCMC 2 cut(s) 480, 1720
BamHI GGATCC 2 cut(s) 2566, 2948
BanI GGYRCC 1 cut(s) 1597
BanII GRGCYC 5 cut(s) 171, 615, 837, 1110, 1864
BarI GAAGNNNNNNTAC 2 cut(s) 2606, 2638
BbrPI CACGTG 2 cut(s) 475, 2506
BbsI GAAGAC 2 cut(s) 2772, 3038
Bbv12I GWGCWC 9 cut(s) 171, 480, 615, 687, 767, 837, 1110, 1864, 2770
BbvCI CCTCAGC 1 cut(s) 26
BbvI GCAGC 9 cut(s) 42, 71, 404, 1107, 1586, 1915, 2924, 2986, 3025
BceAI ACGGC 5 cut(s) 107, 638, 847, 1496, 2578
BciT130I CCWGG 3 cut(s) 1294, 2845, 3035
BciVI GTATCC 1 cut(s) 726
BcnI CCSGG 2 cut(s) 498, 730
BcoDI GTCTC 5 cut(s) 1130, 1472, 1726, 2114, 2209
BcuI ACTAGT 1 cut(s) 1439
BfaI CTAG 5 cut(s) 1440, 1857, 2784, 2874, 2945
BfmI CTRYAG 4 cut(s) 57, 1818, 2910, 3039
BfoI RGCGCY 2 cut(s) 36, 241
BfrI CTTAAG 1 cut(s) 1181
BfuAI ACCTGC 4 cut(s) 814, 1218, 1288, 3032
BfuI GTATCC 1 cut(s) 726
BglII AGATCT 3 cut(s) 573, 1255, 1993
Bme1390I CCNGG 5 cut(s) 498, 730, 1294, 2845, 3035
Bme18I GGWCC 2 cut(s) 1484, 2494
BmeRI GACNNNNNGTC 1 cut(s) 2472
BmeT110I CYCGRG 5 cut(s) 72, 401, 440, 680, 971
BmgBI CACGTC 1 cut(s) 688
BmgT120I GGNCC 5 cut(s) 678, 1484, 1697, 1784, 2494
BmiI GGNNCC 6 cut(s) 1076, 1599, 1942, 2177, 2568, 2950
BmrFI CCNGG 5 cut(s) 498, 730, 1294, 2845, 3035
BpiI GAAGAC 2 cut(s) 2772, 3038
BplI GAGNNNNNCTC 2 cut(s) 1097, 1129
BpmI CTGGAG 2 cut(s) 518, 2754
Bpu10I CCTNAGC 2 cut(s) 26, 2796
Bpu14I TTCGAA 1 cut(s) 1275
BpuEI CTTGAG 2 cut(s) 1473, 2340
BpuMI CCSGG 2 cut(s) 498, 730
Bsa29I ATCGAT 1 cut(s) 1083
BsaAI YACGTR 3 cut(s) 475, 2506, 2586
BsaBI GATNNNNATC 2 cut(s) 1254, 2433
BsaHI GRCGYC 2 cut(s) 642, 771
BsaWI WCCGGW 1 cut(s) 1876
Bsc4I CCNNNNNNNGG 5 cut(s) 502, 1713, 2108, 2422, 2577
Bse1I ACTGG 3 cut(s) 151, 541, 2582
Bse21I CCTNAGG 1 cut(s) 1894
Bse3DI GCAATG 4 cut(s) 366, 1005, 1745, 1931
Bse8I GATNNNNATC 2 cut(s) 1254, 2433
BseBI CCWGG 3 cut(s) 1294, 2845, 3035
BseCI ATCGAT 1 cut(s) 1083
BseJI GATNNNNATC 2 cut(s) 1254, 2433
BseLI CCNNNNNNNGG 5 cut(s) 502, 1713, 2108, 2422, 2577
BseMI GCAATG 4 cut(s) 366, 1005, 1745, 1931
BseMII CTCAG 7 cut(s) 40, 593, 773, 788, 1110, 1908, 2096
BseNI ACTGG 3 cut(s) 151, 541, 2582
BsePI GCGCGC 2 cut(s) 452, 583
BseRI GAGGAG 8 cut(s) 179, 232, 289, 298, 521, 619, 950, 2459
BseSI GKGCMC 2 cut(s) 480, 1720
BseXI GCAGC 9 cut(s) 42, 71, 404, 1107, 1586, 1915, 2924, 2986, 3025
BseYI CCCAGC 1 cut(s) 1837
Bsh1236I CGCG 8 cut(s) 120, 198, 452, 454, 465, 585, 591, 2900
Bsh1285I CGRYCG 2 cut(s) 595, 607
BshFI GGCC 6 cut(s) 650, 679, 1047, 1101, 1699, 1785
BshNI GGYRCC 1 cut(s) 1597
BshVI ATCGAT 1 cut(s) 1083
BsiEI CGRYCG 2 cut(s) 595, 607
BsiHKAI GWGCWC 9 cut(s) 171, 480, 615, 687, 767, 837, 1110, 1864, 2770
BsiHKCI CYCGRG 5 cut(s) 72, 401, 440, 680, 971
BsiSI CCGG 5 cut(s) 15, 498, 676, 729, 1877
BslFI GGGAC 6 cut(s) 553, 735, 1277, 2336, 2803, 2826
BslI CCNNNNNNNGG 5 cut(s) 502, 1713, 2108, 2422, 2577
BsmAI GTCTC 5 cut(s) 1130, 1472, 1726, 2114, 2209
BsmBI CGTCTC 1 cut(s) 1130
BsmFI GGGAC 6 cut(s) 553, 735, 1277, 2336, 2803, 2826
BsmI GAATGC 1 cut(s) 993
BsnI GGCC 6 cut(s) 650, 679, 1047, 1101, 1699, 1785
BsoBI CYCGRG 5 cut(s) 72, 401, 440, 680, 971
Bsp119I TTCGAA 1 cut(s) 1275
Bsp1407I TGTACA 1 cut(s) 2673
Bsp19I CCATGG 2 cut(s) 981, 1214
BspANI GGCC 6 cut(s) 650, 679, 1047, 1101, 1699, 1785
BspCNI CTCAG 7 cut(s) 39, 592, 772, 789, 1111, 1907, 2097
BspDI ATCGAT 1 cut(s) 1083
BspFNI CGCG 8 cut(s) 120, 198, 452, 454, 465, 585, 591, 2900
BspHI TCATGA 3 cut(s) 231, 1332, 2721
BspLI GGNNCC 6 cut(s) 1076, 1599, 1942, 2177, 2568, 2950
BspMAI CTGCAG 3 cut(s) 61, 2914, 3043
BspMI ACCTGC 4 cut(s) 814, 1218, 1288, 3032
BspQI GCTCTTC 3 cut(s) 842, 1965, 2737
BspT104I TTCGAA 1 cut(s) 1275
BspT107I GGYRCC 1 cut(s) 1597
BspTI CTTAAG 1 cut(s) 1181
BsrBI CCGCTC 1 cut(s) 96
BsrDI GCAATG 4 cut(s) 366, 1005, 1745, 1931
BsrGI TGTACA 1 cut(s) 2673
BsrI ACTGG 3 cut(s) 151, 541, 2582
BssHII GCGCGC 2 cut(s) 452, 583
BssNAI GTATAC 1 cut(s) 2458
BssNI GRCGYC 2 cut(s) 642, 771
BssT1I CCWWGG 5 cut(s) 645, 981, 1214, 1375, 1790
Bst1107I GTATAC 1 cut(s) 2458
Bst2UI CCWGG 3 cut(s) 1294, 2845, 3035
Bst4CI ACNGT 8 cut(s) 710, 817, 909, 1268, 1602, 1708, 2125, 2686
BstACI GRCGYC 2 cut(s) 642, 771
BstAFI CTTAAG 1 cut(s) 1181
BstAPI GCANNNNNTGC 2 cut(s) 372, 1289
BstAUI TGTACA 1 cut(s) 2673
BstBAI YACGTR 3 cut(s) 475, 2506, 2586
BstBI TTCGAA 1 cut(s) 1275
BstDSI CCRYGG 4 cut(s) 981, 1214, 1512, 1866
BstFNI CGCG 8 cut(s) 120, 198, 452, 454, 465, 585, 591, 2900
BstH2I RGCGCY 2 cut(s) 36, 241
BstHHI GCGC 9 cut(s) 35, 122, 240, 454, 456, 467, 585, 587, 2011
BstMAI GTCTC 5 cut(s) 1130, 1472, 1726, 2114, 2209
BstMCI CGRYCG 2 cut(s) 595, 607
BstNI CCWGG 3 cut(s) 1294, 2845, 3035
BstNSI RCATGY 3 cut(s) 862, 2188, 2674
BstSCI CCNGG 5 cut(s) 496, 728, 1292, 2843, 3033
BstSFI CTRYAG 4 cut(s) 57, 1818, 2910, 3039
BstSLI GKGCMC 2 cut(s) 480, 1720
BstSNI TACGTA 1 cut(s) 2586
BstUI CGCG 8 cut(s) 120, 198, 452, 454, 465, 585, 591, 2900
BstV1I GCAGC 9 cut(s) 42, 71, 404, 1107, 1586, 1915, 2924, 2986, 3025
BstV2I GAAGAC 2 cut(s) 2772, 3038
BstXI CCANNNNNNTGG 2 cut(s) 1642, 1797
BstZ17I GTATAC 1 cut(s) 2458
Bsu15I ATCGAT 1 cut(s) 1083
Bsu36I CCTNAGG 1 cut(s) 1894
BsuI GTATCC 1 cut(s) 726
BsuRI GGCC 6 cut(s) 650, 679, 1047, 1101, 1699, 1785
BsuTUI ATCGAT 1 cut(s) 1083
BtgI CCRYGG 4 cut(s) 981, 1214, 1512, 1866
BtgZI GCGATG 1 cut(s) 33
BtrI CACGTC 1 cut(s) 688
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 5 cut(s) 54, 548, 767, 786, 2770
BveI ACCTGC 4 cut(s) 814, 1218, 1288, 3032
CaiI CAGNNNCTG 3 cut(s) 1817, 2684, 2999
CciI TCATGA 3 cut(s) 231, 1332, 2721
CfoI GCGC 9 cut(s) 35, 122, 240, 454, 456, 467, 585, 587, 2011
Cfr13I GGNCC 5 cut(s) 678, 1484, 1697, 1784, 2494
ClaI ATCGAT 1 cut(s) 1083
CseI GACGC 1 cut(s) 650
Csp6I GTAC 3 cut(s) 385, 1434, 2674
CviQI GTAC 3 cut(s) 385, 1434, 2674
DriI GACNNNNNGTC 1 cut(s) 2472
EaeI YGGCCR 2 cut(s) 648, 1099
Eam1105I GACNNNNNGTC 1 cut(s) 2472
EciI GGCGGA 6 cut(s) 161, 202, 292, 301, 436, 967
Ecl136II GAGCTC 5 cut(s) 169, 613, 835, 1108, 1862
Eco105I TACGTA 1 cut(s) 2586
Eco130I CCWWGG 5 cut(s) 645, 981, 1214, 1375, 1790
Eco24I GRGCYC 5 cut(s) 171, 615, 837, 1110, 1864
Eco47I GGWCC 2 cut(s) 1484, 2494
Eco47III AGCGCT 1 cut(s) 239
Eco53kI GAGCTC 5 cut(s) 169, 613, 835, 1108, 1862
Eco57I CTGAAG 1 cut(s) 2718
Eco72I CACGTG 2 cut(s) 475, 2506
Eco81I CCTNAGG 1 cut(s) 1894
Eco88I CYCGRG 5 cut(s) 72, 401, 440, 680, 971
EcoICRI GAGCTC 5 cut(s) 169, 613, 835, 1108, 1862
EcoRI GAATTC 3 cut(s) 918, 952, 1500
EcoRII CCWGG 3 cut(s) 1292, 2843, 3033
EcoT14I CCWWGG 5 cut(s) 645, 981, 1214, 1375, 1790
EcoT22I ATGCAT 1 cut(s) 2186
EcoT38I GRGCYC 5 cut(s) 171, 615, 837, 1110, 1864
ErhI CCWWGG 5 cut(s) 645, 981, 1214, 1375, 1790
Esp3I CGTCTC 1 cut(s) 1130
FalI AAGNNNNNCTT 2 cut(s) 1897, 1929
FaqI GGGAC 6 cut(s) 553, 735, 1277, 2336, 2803, 2826
FauI CCCGC 5 cut(s) 146, 341, 356, 596, 837
FblI GTMKAC 2 cut(s) 555, 2457
FriOI GRGCYC 5 cut(s) 171, 615, 837, 1110, 1864
FspBI CTAG 5 cut(s) 1440, 1857, 2784, 2874, 2945
GlaI GCGC 9 cut(s) 34, 121, 239, 453, 455, 466, 584, 586, 2010
GsaI CCCAGC 1 cut(s) 1841
GsuI CTGGAG 2 cut(s) 518, 2754
HaeII RGCGCY 2 cut(s) 36, 241
HaeIII GGCC 6 cut(s) 650, 679, 1047, 1101, 1699, 1785
HapII CCGG 5 cut(s) 15, 498, 676, 729, 1877
HgaI GACGC 1 cut(s) 650
HhaI GCGC 9 cut(s) 35, 122, 240, 454, 456, 467, 585, 587, 2011
Hin1I GRCGYC 2 cut(s) 642, 771
Hin6I GCGC 9 cut(s) 33, 120, 238, 452, 454, 465, 583, 585, 2009
HinP1I GCGC 9 cut(s) 33, 120, 238, 452, 454, 465, 583, 585, 2009
HincII GTYRAC 3 cut(s) 394, 556, 1711
HindII GTYRAC 3 cut(s) 394, 556, 1711
HindIII AAGCTT 2 cut(s) 944, 2879
HpaII CCGG 5 cut(s) 15, 498, 676, 729, 1877
HphI GGTGA 7 cut(s) 814, 823, 1315, 1354, 1370, 2438, 3029
Hpy99I CGWCG 9 cut(s) 128, 185, 428, 557, 644, 659, 671, 773, 776
HpyAV CCTTC 9 cut(s) 58, 154, 1157, 1294, 1330, 2199, 2765, 2842, 3039
HpyCH4III ACNGT 8 cut(s) 710, 817, 909, 1268, 1602, 1708, 2125, 2686
HpyCH4IV ACGT 8 cut(s) 459, 474, 687, 771, 1188, 1806, 2505, 2585
HpySE526I ACGT 8 cut(s) 459, 474, 687, 771, 1188, 1806, 2505, 2585
Hsp92I GRCGYC 2 cut(s) 642, 771
HspAI GCGC 9 cut(s) 33, 120, 238, 452, 454, 465, 583, 585, 2009
LguI GCTCTTC 3 cut(s) 842, 1965, 2737
Lsp1109I GCAGC 9 cut(s) 42, 71, 404, 1107, 1586, 1915, 2924, 2986, 3025
MaeI CTAG 5 cut(s) 1440, 1857, 2784, 2874, 2945
MaeII ACGT 8 cut(s) 459, 474, 687, 771, 1188, 1806, 2505, 2585
MaeIII GTNAC 3 cut(s) 811, 1807, 3017
MbiI CCGCTC 1 cut(s) 96
MfeI CAATTG 2 cut(s) 1089, 3012
MlyI GAGTC 8 cut(s) 137, 203, 387, 437, 452, 983, 1728, 2456
MmeI TCCRAC 4 cut(s) 543, 792, 2277, 2834
Mph1103I ATGCAT 1 cut(s) 2186
MroXI GAANNNNTTC 3 cut(s) 1190, 1236, 2232
MslI CAYNNNNRTG 1 cut(s) 986
MspA1I CMGCKG 3 cut(s) 1098, 2915, 2996
MspCI CTTAAG 1 cut(s) 1181
MspI CCGG 5 cut(s) 15, 498, 676, 729, 1877
MspR9I CCNGG 5 cut(s) 498, 730, 1294, 2845, 3035
MunI CAATTG 2 cut(s) 1089, 3012
Mva1269I GAATGC 1 cut(s) 993
MvaI CCWGG 3 cut(s) 1294, 2845, 3035
MvnI CGCG 8 cut(s) 120, 198, 452, 454, 465, 585, 591, 2900
NciI CCSGG 2 cut(s) 498, 730
NcoI CCATGG 2 cut(s) 981, 1214
NlaIV GGNNCC 6 cut(s) 1076, 1599, 1942, 2177, 2568, 2950
NmeAIII GCCGAG 2 cut(s) 401, 1094
NmuCI GTSAC 2 cut(s) 811, 3017
NsiI ATGCAT 1 cut(s) 2186
NspI RCATGY 3 cut(s) 862, 2188, 2674
NspV TTCGAA 1 cut(s) 1275
PaeI GCATGC 1 cut(s) 2188
PaeR7I CTCGAG 2 cut(s) 440, 971
PagI TCATGA 3 cut(s) 231, 1332, 2721
PauI GCGCGC 2 cut(s) 452, 583
PciSI GCTCTTC 3 cut(s) 842, 1965, 2737
PcsI WCGNNNNNNNCGW 4 cut(s) 213, 613, 663, 2591
PctI GAATGC 1 cut(s) 993
PdmI GAANNNNTTC 3 cut(s) 1190, 1236, 2232
PfeI GAWTC 9 cut(s) 83, 218, 805, 1250, 1562, 1871, 2429, 2649, 2711
PflMI CCANNNNNTGG 1 cut(s) 2577
PfoI TCCNGGA 1 cut(s) 728
Ple19I CGATCG 1 cut(s) 607
PleI GAGTC 8 cut(s) 136, 203, 386, 436, 451, 982, 1728, 2455
PmaCI CACGTG 2 cut(s) 475, 2506
PmlI CACGTG 2 cut(s) 475, 2506
PpsI GAGTC 8 cut(s) 136, 203, 386, 436, 451, 982, 1728, 2455
Ppu21I YACGTR 3 cut(s) 475, 2506, 2586
Psp124BI GAGCTC 5 cut(s) 171, 615, 837, 1110, 1864
Psp1406I AACGTT 1 cut(s) 1188
Psp6I CCWGG 3 cut(s) 1292, 2843, 3033
PspCI CACGTG 2 cut(s) 475, 2506
PspFI CCCAGC 1 cut(s) 1837
PspGI CCWGG 3 cut(s) 1292, 2843, 3033
PspN4I GGNNCC 6 cut(s) 1076, 1599, 1942, 2177, 2568, 2950
PspPI GGNCC 5 cut(s) 678, 1484, 1697, 1784, 2494
PspXI VCTCGAGB 1 cut(s) 971
PstI CTGCAG 3 cut(s) 61, 2914, 3043
PstNI CAGNNNCTG 3 cut(s) 1817, 2684, 2999
PteI GCGCGC 2 cut(s) 452, 583
PvuI CGATCG 1 cut(s) 607
PvuII CAGCTG 1 cut(s) 2915
RsaI GTAC 3 cut(s) 386, 1435, 2675
RsaNI GTAC 3 cut(s) 385, 1434, 2674
RseI CAYNNNNRTG 1 cut(s) 986
SacI GAGCTC 5 cut(s) 171, 615, 837, 1110, 1864
SalI GTCGAC 1 cut(s) 554
SapI GCTCTTC 3 cut(s) 842, 1965, 2737
Sau96I GGNCC 5 cut(s) 678, 1484, 1697, 1784, 2494
SchI GAGTC 8 cut(s) 137, 203, 387, 437, 452, 983, 1728, 2456
ScrFI CCNGG 5 cut(s) 498, 730, 1294, 2845, 3035
SfcI CTRYAG 4 cut(s) 57, 1818, 2910, 3039
Sfr274I CTCGAG 2 cut(s) 440, 971
SfuI TTCGAA 1 cut(s) 1275
SinI GGWCC 2 cut(s) 1484, 2494
SlaI CTCGAG 2 cut(s) 440, 971
SmiMI CAYNNNNRTG 1 cut(s) 986
SmlI CTYRAG 5 cut(s) 440, 971, 1181, 1488, 2355
SmoI CTYRAG 5 cut(s) 440, 971, 1181, 1488, 2355
SnaBI TACGTA 1 cut(s) 2586
SpeI ACTAGT 1 cut(s) 1439
SphI GCATGC 1 cut(s) 2188
SspMI CTAG 5 cut(s) 1440, 1857, 2784, 2874, 2945
SstI GAGCTC 5 cut(s) 171, 615, 837, 1110, 1864
StyD4I CCNGG 5 cut(s) 496, 728, 1292, 2843, 3033
StyI CCWWGG 5 cut(s) 645, 981, 1214, 1375, 1790
TaaI ACNGT 8 cut(s) 710, 817, 909, 1268, 1602, 1708, 2125, 2686
TaiI ACGT 8 cut(s) 462, 477, 690, 774, 1191, 1809, 2508, 2588
TatI WGTACW 1 cut(s) 2673
TauI GCSGC 7 cut(s) 38, 65, 68, 452, 653, 1101, 2999
TfiI GAWTC 9 cut(s) 83, 218, 805, 1250, 1562, 1871, 2429, 2649, 2711
TscAI CASTG 5 cut(s) 61, 548, 767, 786, 2770
TseFI GTSAC 2 cut(s) 811, 3017
TseI GCWGC 9 cut(s) 30, 59, 417, 1095, 1574, 1928, 2912, 2999, 3038
Tsp45I GTSAC 2 cut(s) 811, 3017
TspDTI ATGAA 8 cut(s) 248, 1157, 1313, 1349, 1714, 1905, 2003, 2225
TspGWI ACGGA 3 cut(s) 262, 1883, 2500
TspRI CASTG 5 cut(s) 61, 548, 767, 786, 2770
Van91I CCANNNNNTGG 1 cut(s) 2577
Vha464I CTTAAG 1 cut(s) 1181
VneI GTGCAC 1 cut(s) 476
VpaK11BI GGWCC 2 cut(s) 1484, 2494
XapI RAATTY 6 cut(s) 918, 952, 1500, 1964, 2373, 2924
XbaI TCTAGA 2 cut(s) 1856, 2783
XceI RCATGY 3 cut(s) 862, 2188, 2674
XcmI CCANNNNNNNNNTGG 3 cut(s) 359, 911, 988
XhoI CTCGAG 2 cut(s) 440, 971
XmiI GTMKAC 2 cut(s) 555, 2457
XmnI GAANNNNTTC 3 cut(s) 1190, 1236, 2232
XspI CTAG 5 cut(s) 1440, 1857, 2784, 2874, 2945
ZraI GACGTC 1 cut(s) 772
Zsp2I ATGCAT 1 cut(s) 2186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.