Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009673

Physical Location & Seq

Genomic Coordinates Reverse (-)

34133881 .. 34134969

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g40430.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAAGGAGAAGGTGACACCAAAGGTGGCAGAAGAACTGGTTCGGGTTGTCATCTACTCTTGGAGAGATGCCTCCTGGAGAGAGATCCAGAGTGATGACTGGGGATTCACCCTGCTTCATCAGCCAGGAATTTTCTATGAGGGCAAACTGTTTTGGGCAGGGAAGTTGTGGGAGAGGCAGGGCGAATTTCAGAGGTACAATGGTGCCCTTATCAGCTTTGATCTATCCACAGAAACTTTTGGCTGTATTGATTTACCAGAAGAGCTGCAAGGAGAATTTTGTTCCTTTGGAGTTGTAGAAGGCAGAATCACTGCTGTCGTTTGTAGAGCTGTTGTTGAGGTGTGGCAGTACACAGATAACGTTTTCAGAAACATGGGCACTGTGTGGACTAACCGTCCAGATATGCATTGTTTAATGCAGCCAATGTTTGGGACAGGTAATGCCATGGTTCTAGTTCAGAACAAGCAAAAAATCACTGTGTGCGATTCCTCCAACAATTCAAGGCTGCACGCGCTTGCACTTGACAAATGGCTACACCAAGGTCGTTTCGTTAGAGAAGGACCAAGAATGGAGGCAGCACCTCTTGCAGAGAGTTTATTCTCACCCATCTACGTGGCACCTGAGGATCAAAAGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

213

Amino Acids

24.32

Weight (kDa)

5.45

Isoelectric Point (pI)

31.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	14 - 168	8.7e-10	F-box associated beta propeller domain
FBA_3	PF08268	24 - 115	5.4e-06	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009673)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40430 FvH4_3g40430 FvH4_3g40431
rosa_chinensis	RchiOBHm_Chr5g0073081 RchiOBHm_Chr6g0263631 RchiOBHm_Chr6g0263701
rosa_laevigata	RLG00000014321 RLG00000014323 RLG00000014325
rosa_roxburghii	Rroxscaffold_176G00431150 Rroxscaffold_1G00008130 Rroxscaffold_7G00204030 Rroxscaffold_7G00204050 Rroxscaffold_7G00204090
rosa_samantha	Rh5AG477900 Rh5BG498500 Rh5CG521900 Rh5DG510700 Rh6BG121300 Rh6CG119700 Rh6DG107700
rosa_wichuraiana	Rw5G044380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	203, 616
AccB7I	CCANNNNNTGG	1 cut(s)	428
AccII	CGCG	1 cut(s)	512
AclI	AACGTT	1 cut(s)	360
AclWI	GGATC	2 cut(s)	79, 633
AcsI	RAATTY	3 cut(s)	129, 185, 275
AdeI	CACNNNGTG	2 cut(s)	384, 480
AfaI	GTAC	2 cut(s)	197, 350
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgsI	TTSAA	1 cut(s)	501
AhdI	GACNNNNNGTC	1 cut(s)	393
AjnI	CCWGG	2 cut(s)	74, 124
AluBI	AGCT	3 cut(s)	216, 265, 329
AluI	AGCT	3 cut(s)	216, 265, 329
AlwI	GGATC	2 cut(s)	79, 633
ApeKI	GCWGC	4 cut(s)	265, 418, 505, 575
ApoI	RAATTY	3 cut(s)	129, 185, 275
Asp700I	GAANNNNTTC	1 cut(s)	39
AspLEI	GCGC	1 cut(s)	514
AspS9I	GGNCC	1 cut(s)	560
AsuHPI	GGTGA	3 cut(s)	25, 100, 594
AvaII	GGWCC	1 cut(s)	560
AxyI	CCTNAGG	1 cut(s)	621
BaeGI	GKGCMC	2 cut(s)	208, 380
BaeI	ACNNNNGTAYC	2 cut(s)	187, 220
BanI	GGYRCC	2 cut(s)	203, 616
BbvI	GCAGC	4 cut(s)	252, 430, 492, 587
BccI	CCATC	1 cut(s)	614
BciT130I	CCWGG	2 cut(s)	76, 126
BfaI	CTAG	1 cut(s)	452
BisI	GCNGC	4 cut(s)	266, 419, 506, 576
BlsI	GCNGC	4 cut(s)	267, 420, 507, 577
Bme1390I	CCNGG	2 cut(s)	76, 126
Bme18I	GGWCC	1 cut(s)	560
BmeRI	GACNNNNNGTC	1 cut(s)	393
BmgT120I	GGNCC	1 cut(s)	560
BmiI	GGNNCC	2 cut(s)	205, 618
BmrFI	CCNGG	2 cut(s)	76, 126
BmrI	ACTGGG	1 cut(s)	109
BmsI	GCATC	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	109
BpmI	CTGGAG	1 cut(s)	97
BsaAI	YACGTR	1 cut(s)	613
BsaJI	CCNNGG	2 cut(s)	444, 538
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse1I	ACTGG	2 cut(s)	42, 104
Bse21I	CCTNAGG	1 cut(s)	621
BseBI	CCWGG	2 cut(s)	76, 126
BseDI	CCNNGG	2 cut(s)	444, 538
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMII	CTCAG	1 cut(s)	612
BseNI	ACTGG	2 cut(s)	42, 104
BseSI	GKGCMC	2 cut(s)	208, 380
BseXI	GCAGC	4 cut(s)	252, 430, 492, 587
BsgI	GTGCAG	1 cut(s)	491
Bsh1236I	CGCG	1 cut(s)	512
BshNI	GGYRCC	2 cut(s)	203, 616
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmFI	GGGAC	1 cut(s)	445
Bsp1286I	GDGCHC	2 cut(s)	208, 380
Bsp143I	GATC	3 cut(s)	84, 220, 625
Bsp19I	CCATGG	1 cut(s)	444
BspCNI	CTCAG	1 cut(s)	613
BspFNI	CGCG	1 cut(s)	512
BspLI	GGNNCC	2 cut(s)	205, 618
BspPI	GGATC	2 cut(s)	79, 633
BspQI	GCTCTTC	1 cut(s)	255
BspT107I	GGYRCC	2 cut(s)	203, 616
BsrI	ACTGG	2 cut(s)	42, 104
BssECI	CCNNGG	2 cut(s)	444, 538
BssMI	GATC	3 cut(s)	84, 220, 625
BssT1I	CCWWGG	2 cut(s)	444, 538
Bst2UI	CCWGG	2 cut(s)	76, 126
Bst4CI	ACNGT	4 cut(s)	150, 382, 395, 478
Bst6I	CTCTTC	1 cut(s)	255
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstBAI	YACGTR	1 cut(s)	613
BstC8I	GCNNGC	2 cut(s)	510, 516
BstDEI	CTNAG	1 cut(s)	621
BstDSI	CCRYGG	1 cut(s)	444
BstFNI	CGCG	1 cut(s)	512
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	3 cut(s)	87, 223, 628
BstMBI	GATC	3 cut(s)	84, 220, 625
BstMWI	GCNNNNNNNGC	3 cut(s)	121, 511, 584
BstNI	CCWGG	2 cut(s)	76, 126
BstSCI	CCNGG	2 cut(s)	74, 124
BstSLI	GKGCMC	2 cut(s)	208, 380
BstUI	CGCG	1 cut(s)	512
BstV1I	GCAGC	4 cut(s)	252, 430, 492, 587
BstX2I	RGATCY	1 cut(s)	84
BstXI	CCANNNNNNTGG	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	84
Bsu36I	CCTNAGG	1 cut(s)	621
BtgI	CCRYGG	1 cut(s)	444
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	3 cut(s)	309, 378, 474
Cac8I	GCNNGC	2 cut(s)	510, 516
CfoI	GCGC	1 cut(s)	514
Cfr13I	GGNCC	1 cut(s)	560
Csp6I	GTAC	2 cut(s)	196, 349
CviAII	CATG	2 cut(s)	373, 445
CviJI	RGCY	9 cut(s)	124, 216, 243, 265, 329, 421, 505, 532, 636
CviKI_1	RGCY	9 cut(s)	124, 216, 243, 265, 329, 421, 505, 532, 636
CviQI	GTAC	2 cut(s)	196, 349
DdeI	CTNAG	1 cut(s)	621
DpnI	GATC	3 cut(s)	86, 222, 627
DpnII	GATC	3 cut(s)	84, 220, 625
DraIII	CACNNNGTG	2 cut(s)	384, 480
DriI	GACNNNNNGTC	1 cut(s)	393
Eam1104I	CTCTTC	1 cut(s)	255
Eam1105I	GACNNNNNGTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	255
Eco130I	CCWWGG	2 cut(s)	444, 538
Eco47I	GGWCC	1 cut(s)	560
Eco81I	CCTNAGG	1 cut(s)	621
EcoRII	CCWGG	2 cut(s)	74, 124
EcoT14I	CCWWGG	2 cut(s)	444, 538
EcoT22I	ATGCAT	1 cut(s)	408
ErhI	CCWWGG	2 cut(s)	444, 538
FaeI	CATG	2 cut(s)	376, 448
FaiI	YATR	4 cut(s)	138, 374, 404, 446
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	2 cut(s)	372, 444
Fnu4HI	GCNGC	4 cut(s)	266, 419, 506, 576
Fsp4HI	GCNGC	4 cut(s)	266, 419, 506, 576
FspBI	CTAG	1 cut(s)	452
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	4 cut(s)	266, 419, 506, 576
GsuI	CTGGAG	1 cut(s)	97
HhaI	GCGC	1 cut(s)	514
Hin1II	CATG	2 cut(s)	376, 448
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HinfI	GANTC	3 cut(s)	105, 306, 485
HphI	GGTGA	3 cut(s)	25, 100, 594
Hpy166II	GTNNAC	2 cut(s)	351, 387
Hpy188I	TCNGA	3 cut(s)	192, 368, 459
Hpy188III	TCNNGA	2 cut(s)	88, 398
Hpy8I	GTNNAC	2 cut(s)	351, 387
HpyAV	CCTTC	3 cut(s)	4, 293, 551
HpyCH4III	ACNGT	4 cut(s)	150, 382, 395, 478
HpyCH4IV	ACGT	2 cut(s)	360, 612
HpyCH4V	TGCA	6 cut(s)	268, 406, 418, 508, 518, 587
HpyF10VI	GCNNNNNNNGC	3 cut(s)	121, 511, 584
HpyF3I	CTNAG	1 cut(s)	621
HpySE526I	ACGT	2 cut(s)	360, 612
Hsp92II	CATG	2 cut(s)	376, 448
HspAI	GCGC	1 cut(s)	512
Kzo9I	GATC	3 cut(s)	84, 220, 625
LguI	GCTCTTC	1 cut(s)	255
Lsp1109I	GCAGC	4 cut(s)	252, 430, 492, 587
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	452
MaeII	ACGT	2 cut(s)	360, 612
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	3 cut(s)	86, 222, 627
MboI	GATC	3 cut(s)	84, 220, 625
MboII	GAAGA	2 cut(s)	44, 272
MflI	RGATCY	1 cut(s)	84
MhlI	GDGCHC	2 cut(s)	208, 380
MluCI	AATT	4 cut(s)	129, 185, 275, 496
MmeI	TCCRAC	1 cut(s)	516
MnlI	CCTC	9 cut(s)	82, 133, 168, 186, 331, 499, 565, 591, 616
Mph1103I	ATGCAT	1 cut(s)	408
MroXI	GAANNNNTTC	1 cut(s)	39
MseI	TTAA	1 cut(s)	413
MslI	CAYNNNNRTG	1 cut(s)	611
MspR9I	CCNGG	2 cut(s)	76, 126
MvaI	CCWGG	2 cut(s)	76, 126
MvnI	CGCG	1 cut(s)	512
MwoI	GCNNNNNNNGC	3 cut(s)	121, 511, 584
NcoI	CCATGG	1 cut(s)	444
NdeII	GATC	3 cut(s)	84, 220, 625
NlaIII	CATG	2 cut(s)	376, 448
NlaIV	GGNNCC	2 cut(s)	205, 618
NmuCI	GTSAC	1 cut(s)	13
NsiI	ATGCAT	1 cut(s)	408
PciSI	GCTCTTC	1 cut(s)	255
PdmI	GAANNNNTTC	1 cut(s)	39
PfeI	GAWTC	3 cut(s)	105, 306, 485
PflMI	CCANNNNNTGG	1 cut(s)	428
PfoI	TCCNGGA	1 cut(s)	74
PkrI	GCNGC	4 cut(s)	267, 420, 507, 577
Ppu21I	YACGTR	1 cut(s)	613
Psp1406I	AACGTT	1 cut(s)	360
Psp6I	CCWGG	2 cut(s)	74, 124
PspGI	CCWGG	2 cut(s)	74, 124
PspN4I	GGNNCC	2 cut(s)	205, 618
PspPI	GGNCC	1 cut(s)	560
PsuI	RGATCY	1 cut(s)	84
RsaI	GTAC	2 cut(s)	197, 350
RsaNI	GTAC	2 cut(s)	196, 349
RseI	CAYNNNNRTG	1 cut(s)	611
SapI	GCTCTTC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	413
SatI	GCNGC	4 cut(s)	266, 419, 506, 576
Sau3AI	GATC	3 cut(s)	84, 220, 625
Sau96I	GGNCC	1 cut(s)	560
ScrFI	CCNGG	2 cut(s)	76, 126
SduI	GDGCHC	2 cut(s)	208, 380
SfaNI	GCATC	1 cut(s)	58
SinI	GGWCC	1 cut(s)	560
SmiMI	CAYNNNNRTG	1 cut(s)	611
Sse9I	AATT	4 cut(s)	129, 185, 275, 496
SspMI	CTAG	1 cut(s)	452
StyD4I	CCNGG	2 cut(s)	74, 124
StyI	CCWWGG	2 cut(s)	444, 538
TaaI	ACNGT	4 cut(s)	150, 382, 395, 478
TaiI	ACGT	2 cut(s)	363, 615
TasI	AATT	4 cut(s)	129, 185, 275, 496
TatI	WGTACW	1 cut(s)	348
TfiI	GAWTC	3 cut(s)	105, 306, 485
Tru1I	TTAA	1 cut(s)	413
Tru9I	TTAA	1 cut(s)	413
TscAI	CASTG	3 cut(s)	316, 385, 481
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	4 cut(s)	265, 418, 505, 575
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	2 cut(s)	17, 107
TspRI	CASTG	3 cut(s)	316, 385, 481
Van91I	CCANNNNNTGG	1 cut(s)	428
VpaK11BI	GGWCC	1 cut(s)	560
XapI	RAATTY	3 cut(s)	129, 185, 275
XmnI	GAANNNNTTC	1 cut(s)	39
XspI	CTAG	1 cut(s)	452
Zsp2I	ATGCAT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.