Rh5AG477900

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0009673
Physical Location & Seq
Reverse (-)
82146443 .. 82149439
2997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG477900.1

Sequence Viewer

Length: 1269 bp
ATGAAGAGGAAGCACTGTGAATGTTGCCATGACATATGCGATAGTGAAAGTTGTTGCACTGGCTGTAGCTCCAAGAGAAGACTGGAAAGAAAACTTGGAGACTGTAATGACCTGCCACCAAAGGCTGAACTTGGACATAGCAACGATTGTTTAGAGAGGATTCTTGTAGGGCAGCCACTGAGGATGTTAGCTCAATACCAGATGGTATCAAGACAGTGGAAGGCTCTCATTGGCCAACCAACATTTCAACAAATCCTTGCTGAAAAATCTGAGGCAAACAGCTTGTTTGTGAGTTATTTGAAGACTGATAAGGTAGGAATTGTAAGGCTGATTCACAACCGATATTCAGTGACCAATTATAGCCTCCCTCCATCTAGGTCTGCACTTCCCCTTAAGAATGTGTTAGGGTCATGCTACGGCTTGGTATGCTTGGGAAATACCAGCCGAGGAGGATACAGAGCTGAGGAGGATATACTCCTTCTCAACCCCTGCACAAAAAAATTGAGATTAATCAAGGATACAGTACATTGTGGACTGGAGAGGGGGCACTATGGCCTCGGTTTTGATAGAAAAGCACAAGATTTCAAAATTGCGAAAGTGTGCACTCCGCTGGTTAGGCACTCCAAGAAGAAGCTTACTCCAAAGAGGCAAGCAGAGATGGTGCATATTATAATCTACTCATGGAAAGATTCTTGCTGGCGTGAAACTTATTTTGAAGATTGGGGTTTCAATTTGGTTGATTACCCGGGCATGTTTCTTGACGGCAAAATCTACTGGCCAGGGGAGGTTTGGGAGATGCAAGGGATATTTCTCAGACCACAGGGTCACCAAAACTCCTTGGTAAGCTTTGATGTGTCATCTGAAACGCTTGGCTGCATAAACCTGCCAGACGACCTCCAGTCTGAATATTGCAGCTTTGGAGTTGTTGCTGGAACATTGACTGCATGCGTCTGCGGAGAAAAAACTGAAGTTTGGCAATACACAGAGAATAATTTCAGAAAGAGGGCAAGTTTATCGACTTACAGAAATCATATGTCTTCTCGCCTCCAGCCTCTATATCAGCTAGGGAATCTCATGGTTCTACTTCACAATGGCAGGAAAGTTACTCTATATGATATGTCTGACCACTCCAAGCTACATGCTTTGGGTCTTGACAAGTGGGTTCATCAAGGTGCTGACAATGGAAGAGGGCCAAGAATGGAAGCAGTGCCATTGGTTGAAAGCTTGTTTTCGTCAACCTTTGAGACAGAAAAGGCAAATTGTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

422

Amino Acids

48.0

Weight (kDa)

8.57

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 116 - 301 1.9e-08 F-box associated beta propeller domain
FBA_1 PF07734 133 - 355 3.7e-14 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 671
AasI GACNNNNNNGTC 1 cut(s) 822
Acc36I ACCTGC 2 cut(s) 120, 891
AciI CCGC 2 cut(s) 608, 954
AcoI YGGCCR 2 cut(s) 232, 776
AcuI CTGAAG 1 cut(s) 987
AfaI GTAC 1 cut(s) 525
AflII CTTAAG 1 cut(s) 392
AgsI TTSAA 6 cut(s) 248, 301, 586, 716, 730, 1220
AhdI GACNNNNNGTC 1 cut(s) 898
AjnI CCWGG 1 cut(s) 778
AjuI GAANNNNNNNTTGG 4 cut(s) 78, 110, 228, 260
Alw21I GWGCWC 1 cut(s) 605
Alw26I GTCTC 2 cut(s) 93, 1238
Alw44I GTGCAC 1 cut(s) 601
AlwNI CAGNNNCTG 1 cut(s) 178
Ama87I CYCGRG 1 cut(s) 745
AoxI GGCC 4 cut(s) 232, 553, 776, 1190
ApaLI GTGCAC 1 cut(s) 601
ApeKI GCWGC 3 cut(s) 172, 873, 912
AseI ATTAAT 1 cut(s) 509
Asp700I GAANNNNTTC 1 cut(s) 992
AspS9I GGNCC 1 cut(s) 1190
AsuC2I CCSGG 2 cut(s) 746, 747
AsuHPI GGTGA 1 cut(s) 818
AvaI CYCGRG 1 cut(s) 745
BaeGI GKGCMC 2 cut(s) 549, 605
BalI TGGCCA 2 cut(s) 234, 778
BbsI GAAGAC 3 cut(s) 85, 308, 1029
Bbv12I GWGCWC 1 cut(s) 605
BbvCI CCTCAGC 1 cut(s) 462
BbvI GCAGC 3 cut(s) 184, 860, 924
BccI CCATC 3 cut(s) 196, 379, 652
BceAI ACGGC 2 cut(s) 433, 778
BcgI CGANNNNNNTGC 2 cut(s) 996, 1030
BciT130I CCWGG 1 cut(s) 780
BciVI GTATCC 2 cut(s) 446, 511
BcnI CCSGG 2 cut(s) 746, 747
BcoDI GTCTC 2 cut(s) 93, 1238
BfaI CTAG 2 cut(s) 375, 1064
BfmI CTRYAG 1 cut(s) 64
BfrI CTTAAG 1 cut(s) 392
BfuAI ACCTGC 2 cut(s) 120, 891
BfuI GTATCC 2 cut(s) 446, 511
BisI GCNGC 3 cut(s) 173, 874, 913
BlsI GCNGC 3 cut(s) 174, 875, 914
Bme1390I CCNGG 3 cut(s) 746, 747, 780
BmeRI GACNNNNNGTC 1 cut(s) 898
BmeT110I CYCGRG 1 cut(s) 745
BmgT120I GGNCC 1 cut(s) 1190
BmrFI CCNGG 3 cut(s) 746, 747, 780
BmsI GCATC 1 cut(s) 786
BpiI GAAGAC 3 cut(s) 85, 308, 1029
BpmI CTGGAG 3 cut(s) 557, 881, 1031
Bpu10I CCTNAGC 1 cut(s) 462
BpuMI CCSGG 2 cut(s) 746, 747
BsaJI CCNNGG 5 cut(s) 445, 556, 745, 779, 837
BsaXI ACNNNNNCTCC 2 cut(s) 818, 848
Bse1I ACTGG 5 cut(s) 64, 87, 540, 779, 898
BseBI CCWGG 1 cut(s) 780
BseDI CCNNGG 5 cut(s) 445, 556, 745, 779, 837
BseGI GGATG 1 cut(s) 189
BseMII CTCAG 4 cut(s) 170, 261, 453, 826
BseNI ACTGG 5 cut(s) 64, 87, 540, 779, 898
BseRI GAGGAG 2 cut(s) 462, 479
BseSI GKGCMC 2 cut(s) 549, 605
BseXI GCAGC 3 cut(s) 184, 860, 924
BsgI GTGCAG 2 cut(s) 366, 475
BshFI GGCC 4 cut(s) 234, 555, 778, 1192
BsiHKAI GWGCWC 1 cut(s) 605
BsiHKCI CYCGRG 1 cut(s) 745
BsiSI CCGG 1 cut(s) 746
BsmAI GTCTC 2 cut(s) 93, 1238
BsnI GGCC 4 cut(s) 234, 555, 778, 1192
BsoBI CYCGRG 1 cut(s) 745
Bsp1286I GDGCHC 2 cut(s) 549, 605
BspACI CCGC 2 cut(s) 608, 954
BspANI GGCC 4 cut(s) 234, 555, 778, 1192
BspCNI CTCAG 4 cut(s) 171, 262, 454, 825
BspMI ACCTGC 2 cut(s) 120, 891
BspTI CTTAAG 1 cut(s) 392
BsrI ACTGG 5 cut(s) 64, 87, 540, 779, 898
BssECI CCNNGG 5 cut(s) 445, 556, 745, 779, 837
BssT1I CCWWGG 1 cut(s) 837
Bst2UI CCWGG 1 cut(s) 780
Bst4CI ACNGT 4 cut(s) 17, 104, 216, 523
Bst6I CTCTTC 1 cut(s) 1180
BstAFI CTTAAG 1 cut(s) 392
BstC8I GCNNGC 3 cut(s) 651, 698, 946
BstDEI CTNAG 4 cut(s) 179, 270, 462, 812
BstEII GGTNACC 1 cut(s) 824
BstF5I GGATG 1 cut(s) 189
BstMAI GTCTC 2 cut(s) 93, 1238
BstMWI GCNNNNNNNGC 2 cut(s) 426, 616
BstNI CCWGG 1 cut(s) 780
BstNSI RCATGY 3 cut(s) 754, 948, 1142
BstPI GGTNACC 1 cut(s) 824
BstSCI CCNGG 3 cut(s) 744, 745, 778
BstSFI CTRYAG 1 cut(s) 64
BstSLI GKGCMC 2 cut(s) 549, 605
BstV1I GCAGC 3 cut(s) 184, 860, 924
BstV2I GAAGAC 3 cut(s) 85, 308, 1029
BsuI GTATCC 2 cut(s) 446, 511
BsuRI GGCC 4 cut(s) 234, 555, 778, 1192
BtsCI GGATG 1 cut(s) 189
BtsI GCAGTG 1 cut(s) 1212
BtsIMutI CAGTG 6 cut(s) 13, 57, 176, 221, 354, 1212
BveI ACCTGC 2 cut(s) 120, 891
Cac8I GCNNGC 3 cut(s) 651, 698, 946
CaiI CAGNNNCTG 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 1190
Cfr9I CCCGGG 1 cut(s) 745
CseI GACGC 1 cut(s) 937
Csp6I GTAC 1 cut(s) 524
CviAII CATG 7 cut(s) 29, 411, 681, 751, 945, 1075, 1139
CviQI GTAC 1 cut(s) 524
DdeI CTNAG 4 cut(s) 179, 270, 462, 812
DrdI GACNNNNNNGTC 1 cut(s) 822
DriI GACNNNNNGTC 1 cut(s) 898
DseDI GACNNNNNNGTC 1 cut(s) 822
EaeI YGGCCR 2 cut(s) 232, 776
Eam1104I CTCTTC 1 cut(s) 1180
Eam1105I GACNNNNNGTC 1 cut(s) 898
EarI CTCTTC 1 cut(s) 1180
Eco130I CCWWGG 1 cut(s) 837
Eco57I CTGAAG 1 cut(s) 987
Eco88I CYCGRG 1 cut(s) 745
Eco91I GGTNACC 1 cut(s) 824
EcoO65I GGTNACC 1 cut(s) 824
EcoRII CCWGG 1 cut(s) 778
EcoT14I CCWWGG 1 cut(s) 837
ErhI CCWWGG 1 cut(s) 837
FaeI CATG 7 cut(s) 32, 414, 684, 754, 948, 1078, 1142
FatI CATG 7 cut(s) 28, 410, 680, 750, 944, 1074, 1138
FauNDI CATATG 2 cut(s) 35, 1032
Fnu4HI GCNGC 3 cut(s) 173, 874, 913
FokI GGATG 1 cut(s) 196
Fsp4HI GCNGC 3 cut(s) 173, 874, 913
FspBI CTAG 2 cut(s) 375, 1064
GluI GCNGC 3 cut(s) 173, 874, 913
GsuI CTGGAG 3 cut(s) 557, 881, 1031
HaeIII GGCC 4 cut(s) 234, 555, 778, 1192
HapII CCGG 1 cut(s) 746
HgaI GACGC 1 cut(s) 937
Hin1II CATG 7 cut(s) 32, 414, 684, 754, 948, 1078, 1142
HincII GTYRAC 1 cut(s) 1236
HindII GTYRAC 1 cut(s) 1236
HindIII AAGCTT 3 cut(s) 632, 844, 1222
HinfI GANTC 4 cut(s) 160, 331, 689, 1069
HpaII CCGG 1 cut(s) 746
HphI GGTGA 1 cut(s) 818
Hpy166II GTNNAC 3 cut(s) 533, 603, 1236
Hpy188I TCNGA 6 cut(s) 271, 815, 862, 904, 998, 1123
Hpy188III TCNNGA 3 cut(s) 210, 758, 1151
Hpy8I GTNNAC 3 cut(s) 533, 603, 1236
HpyAV CCTTC 2 cut(s) 214, 488
HpyCH4III ACNGT 4 cut(s) 17, 104, 216, 523
HpyCH4V TGCA 9 cut(s) 57, 383, 492, 603, 664, 799, 876, 912, 944
HpyF10VI GCNNNNNNNGC 2 cut(s) 426, 616
HpyF3I CTNAG 4 cut(s) 179, 270, 462, 812
Hsp92II CATG 7 cut(s) 32, 414, 684, 754, 948, 1078, 1142
LmnI GCTCC 1 cut(s) 74
Lsp1109I GCAGC 3 cut(s) 184, 860, 924
LweI GCATC 1 cut(s) 786
MaeI CTAG 2 cut(s) 375, 1064
MaeIII GTNAC 3 cut(s) 349, 824, 1102
MboII GAAGA 7 cut(s) 16, 90, 313, 640, 728, 1029, 1197
MhlI GDGCHC 2 cut(s) 549, 605
MlsI TGGCCA 2 cut(s) 234, 778
MluCI AATT 7 cut(s) 318, 355, 500, 588, 730, 991, 1258
MluNI TGGCCA 2 cut(s) 234, 778
Mox20I TGGCCA 2 cut(s) 234, 778
MroXI GAANNNNTTC 1 cut(s) 992
MscI TGGCCA 2 cut(s) 234, 778
MseI TTAA 2 cut(s) 393, 509
MslI CAYNNNNRTG 1 cut(s) 1170
Msp20I TGGCCA 2 cut(s) 234, 778
MspA1I CMGCKG 1 cut(s) 610
MspCI CTTAAG 1 cut(s) 392
MspI CCGG 1 cut(s) 746
MspR9I CCNGG 3 cut(s) 746, 747, 780
MvaI CCWGG 1 cut(s) 780
MwoI GCNNNNNNNGC 2 cut(s) 426, 616
NciI CCSGG 2 cut(s) 746, 747
NdeI CATATG 2 cut(s) 35, 1032
NlaIII CATG 7 cut(s) 32, 414, 684, 754, 948, 1078, 1142
NmeAIII GCCGAG 1 cut(s) 470
NmuCI GTSAC 2 cut(s) 349, 824
NspI RCATGY 3 cut(s) 754, 948, 1142
PaeI GCATGC 1 cut(s) 948
PdmI GAANNNNTTC 1 cut(s) 992
PfeI GAWTC 4 cut(s) 160, 331, 689, 1069
PkrI GCNGC 3 cut(s) 174, 875, 914
PshBI ATTAAT 1 cut(s) 509
PsiI TTATAA 1 cut(s) 671
Psp6I CCWGG 1 cut(s) 778
PspEI GGTNACC 1 cut(s) 824
PspGI CCWGG 1 cut(s) 778
PspPI GGNCC 1 cut(s) 1190
PstNI CAGNNNCTG 1 cut(s) 178
RsaI GTAC 1 cut(s) 525
RsaNI GTAC 1 cut(s) 524
RseI CAYNNNNRTG 1 cut(s) 1170
SaqAI TTAA 2 cut(s) 393, 509
SatI GCNGC 3 cut(s) 173, 874, 913
Sau96I GGNCC 1 cut(s) 1190
ScrFI CCNGG 3 cut(s) 746, 747, 780
SduI GDGCHC 2 cut(s) 549, 605
SfaNI GCATC 1 cut(s) 786
SfcI CTRYAG 1 cut(s) 64
SmaI CCCGGG 1 cut(s) 747
SmiMI CAYNNNNRTG 1 cut(s) 1170
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
SphI GCATGC 1 cut(s) 948
Sse9I AATT 7 cut(s) 318, 355, 500, 588, 730, 991, 1258
SsiI CCGC 2 cut(s) 608, 954
SspI AATATT 1 cut(s) 908
SspMI CTAG 2 cut(s) 375, 1064
StyD4I CCNGG 3 cut(s) 744, 745, 778
StyI CCWWGG 1 cut(s) 837
TaaI ACNGT 4 cut(s) 17, 104, 216, 523
TaqI TCGA 1 cut(s) 1016
TasI AATT 7 cut(s) 318, 355, 500, 588, 730, 991, 1258
TatI WGTACW 1 cut(s) 523
TfiI GAWTC 4 cut(s) 160, 331, 689, 1069
Tru1I TTAA 2 cut(s) 393, 509
Tru9I TTAA 2 cut(s) 393, 509
TscAI CASTG 6 cut(s) 20, 64, 183, 221, 354, 1212
TseFI GTSAC 2 cut(s) 349, 824
TseI GCWGC 3 cut(s) 172, 873, 912
Tsp45I GTSAC 2 cut(s) 349, 824
TspDTI ATGAA 2 cut(s) 17, 1154
TspMI CCCGGG 1 cut(s) 745
TspRI CASTG 6 cut(s) 20, 64, 183, 221, 354, 1212
Vha464I CTTAAG 1 cut(s) 392
VneI GTGCAC 1 cut(s) 601
VspI ATTAAT 1 cut(s) 509
XceI RCATGY 3 cut(s) 754, 948, 1142
XcmI CCANNNNNNNNNTGG 2 cut(s) 79, 786
XmaI CCCGGG 1 cut(s) 745
XmnI GAANNNNTTC 1 cut(s) 992
XspI CTAG 2 cut(s) 375, 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.