Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009673

Physical Location & Seq

Genomic Coordinates Reverse (-)

18515666 .. 18518085

Gene Structure 2420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23643

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGAACCTGCCTGTGAAGAACATATGCCAATGCCAACTGGTCTCTAAATCATGGCAAACAATGATAGCTGATTCTGAGTTCAATCACATGGTATGCCAACGTAATTGCCCGGTTAGCATATTTGTCAAATATGTTGATTTTCCCCAGACAGTATGCATCATTCATTACTCTAGTGATACTAGTTATTCTGTGGAAGAATTTGATCTCCCAAGTGGTTTCAAGGAAATTCTGGGCTCTTGCTATGGACTGATATGTCTAGGGGATGAAGAACAGCAGAAGCTATTGTTCTTGAATCCATTTACTAGGTGGATTCAAATCATACAAGAACTGGGAGATACCTCTGGAAACTATGGATTTGGATATGACCTGACTATTGAAGATTTCAAACTAGTCAAGCTATTGGACAATTTCTCTGCTCCTTATGACACAAGAAGAGTAATGATCTATTCAATGAAAGATCATTGTTGGAGAGAGAAATCATATGAAAGTTGGCAATTTAAATTGGACCCTTCAGCTGCCAATTTCGTCGCTGATAAACTATATTGGAGAGGGTTTTTATTGAAAACTCCACAACAACAAGTAGTAGAAGAAGATGTGCTGATCACTTTCAATATCTGCAGCGAGACTTTTGGAAGAGTTCGACTACCTGAAGAACTTTGTGGGCGGTATGTAACCTTTGGAGTGATCGAGAACAAGCTATCTGCTTGCCTCTCTGCTCAAGACATCTCCATATGGTTCTTGAATGACGATCAGTTTCAAAGAAGCATCACTTTGGCCAACTACAAAGCAAATCTTCATTGCTTAGTGCGGCCATTATATCTACGAGGCAATACCATCTTTCTTCTTCGAGCCAAAAGGAAGATTACCAAATATAACATCACTGAAGACTCTAAAGTTCAGATTTTGGGGTTTAACAAGACACCCGTTAGCCTTCAAGCTTTGGGTTTCGGTCTGATGTCGGAACCTAAAGCGAGAATGGAAGCCATTGGTTTTGTTCAAAGCTTATTTCCACTAGTATGCCAAAGGAATGGAAAACATGATGATGAGCCAAGTAAAGAAATTTCAAAAAGAAGAAAACTGTGTCCCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

363

Amino Acids

41.93

Weight (kDa)

7.42

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	63 - 251	2.1e-08	F-box associated beta propeller domain
FBA_1	PF07734	79 - 246	2e-12	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009673)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40430 FvH4_3g40430 FvH4_3g40431
rosa_chinensis	RchiOBHm_Chr5g0073081 RchiOBHm_Chr6g0263631 RchiOBHm_Chr6g0263701
rosa_laevigata	RLG00000014321 RLG00000014323 RLG00000014325
rosa_roxburghii	Rroxscaffold_176G00431150 Rroxscaffold_1G00008130 Rroxscaffold_7G00204030 Rroxscaffold_7G00204050 Rroxscaffold_7G00204090
rosa_samantha	Rh5AG477900 Rh5BG498500 Rh5CG521900 Rh5DG510700 Rh6BG121300 Rh6CG119700 Rh6DG107700
rosa_wichuraiana	Rw5G044380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	252
Acc36I	ACCTGC	1 cut(s)	15
AciI	CCGC	2 cut(s)	664, 808
AcoI	YGGCCR	2 cut(s)	774, 809
AcsI	RAATTY	3 cut(s)	197, 225, 1059
AcuI	CTGAAG	3 cut(s)	495, 669, 903
AhlI	ACTAGT	3 cut(s)	179, 388, 1012
AluBI	AGCT	7 cut(s)	68, 280, 397, 515, 697, 938, 1002
AluI	AGCT	7 cut(s)	68, 280, 397, 515, 697, 938, 1002
Alw26I	GTCTC	2 cut(s)	46, 617
AoxI	GGCC	2 cut(s)	774, 809
ApeKI	GCWGC	2 cut(s)	515, 618
ApoI	RAATTY	3 cut(s)	197, 225, 1059
AspS9I	GGNCC	1 cut(s)	505
AsuC2I	CCSGG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	505
BalI	TGGCCA	1 cut(s)	776
BanII	GRGCYC	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	891
BbvI	GCAGC	2 cut(s)	502, 630
BccI	CCATC	1 cut(s)	842
BclI	TGATCA	1 cut(s)	600
BcnI	CCSGG	1 cut(s)	110
BcoDI	GTCTC	2 cut(s)	46, 617
BcuI	ACTAGT	3 cut(s)	179, 388, 1012
BfaI	CTAG	6 cut(s)	171, 180, 257, 303, 389, 1013
BfmI	CTRYAG	1 cut(s)	616
BfuAI	ACCTGC	1 cut(s)	15
BisI	GCNGC	3 cut(s)	516, 619, 809
BlsI	GCNGC	3 cut(s)	517, 620, 810
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	505
BmgT120I	GGNCC	1 cut(s)	505
BmiI	GGNNCC	2 cut(s)	507, 963
BmrFI	CCNGG	1 cut(s)	110
BmrI	ACTGGG	1 cut(s)	338
BmsI	GCATC	2 cut(s)	165, 774
BmuI	ACTGGG	1 cut(s)	338
BpiI	GAAGAC	1 cut(s)	891
BpuEI	CTTGAG	1 cut(s)	702
BpuMI	CCSGG	1 cut(s)	110
BsaBI	GATNNNNATC	1 cut(s)	314
BsaI	GGTCTC	1 cut(s)	46
Bse1I	ACTGG	2 cut(s)	42, 333
Bse3DI	GCAATG	1 cut(s)	796
Bse8I	GATNNNNATC	1 cut(s)	314
BseGI	GGATG	1 cut(s)	268
BseJI	GATNNNNATC	1 cut(s)	314
BseMI	GCAATG	1 cut(s)	796
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	2 cut(s)	42, 333
BseXI	GCAGC	2 cut(s)	502, 630
BshFI	GGCC	2 cut(s)	776, 811
BsiSI	CCGG	1 cut(s)	110
BslFI	GGGAC	1 cut(s)	1068
BsmAI	GTCTC	2 cut(s)	46, 617
BsmFI	GGGAC	1 cut(s)	1068
BsnI	GGCC	2 cut(s)	776, 811
Bso31I	GGTCTC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp143I	GATC	6 cut(s)	202, 441, 457, 600, 684, 748
BspACI	CCGC	2 cut(s)	664, 808
BspANI	GGCC	2 cut(s)	776, 811
BspCNI	CTCAG	1 cut(s)	67
BspLI	GGNNCC	2 cut(s)	507, 963
BspMAI	CTGCAG	1 cut(s)	620
BspMI	ACCTGC	1 cut(s)	15
BspTNI	GGTCTC	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	796
BsrI	ACTGG	2 cut(s)	42, 333
BssMI	GATC	6 cut(s)	202, 441, 457, 600, 684, 748
Bst4CI	ACNGT	2 cut(s)	151, 1080
Bst6I	CTCTTC	2 cut(s)	427, 628
BstC8I	GCNNGC	1 cut(s)	706
BstDEI	CTNAG	2 cut(s)	75, 802
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	6 cut(s)	205, 444, 460, 603, 687, 751
BstMAI	GTCTC	2 cut(s)	46, 617
BstMBI	GATC	6 cut(s)	202, 441, 457, 600, 684, 748
BstMWI	GCNNNNNNNGC	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	108
BstSFI	CTRYAG	1 cut(s)	616
BstV1I	GCAGC	2 cut(s)	502, 630
BstV2I	GAAGAC	1 cut(s)	891
BstXI	CCANNNNNNTGG	1 cut(s)	1028
BsuRI	GGCC	2 cut(s)	776, 811
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	879
BveI	ACCTGC	1 cut(s)	15
Cac8I	GCNNGC	1 cut(s)	706
Cfr13I	GGNCC	1 cut(s)	505
CviAII	CATG	3 cut(s)	51, 88, 1037
DdeI	CTNAG	2 cut(s)	75, 802
DpnI	GATC	6 cut(s)	204, 443, 459, 602, 686, 750
DpnII	GATC	6 cut(s)	202, 441, 457, 600, 684, 748
DraI	TTTAAA	1 cut(s)	499
DrdI	GACNNNNNNGTC	1 cut(s)	252
DseDI	GACNNNNNNGTC	1 cut(s)	252
EaeI	YGGCCR	2 cut(s)	774, 809
Eam1104I	CTCTTC	2 cut(s)	427, 628
EarI	CTCTTC	2 cut(s)	427, 628
Eco24I	GRGCYC	1 cut(s)	236
Eco31I	GGTCTC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	505
Eco57I	CTGAAG	3 cut(s)	495, 669, 903
EcoT22I	ATGCAT	1 cut(s)	158
EcoT38I	GRGCYC	1 cut(s)	236
FaeI	CATG	3 cut(s)	54, 91, 1040
FalI	AAGNNNNNCTT	4 cut(s)	754, 786, 777, 809
FaqI	GGGAC	1 cut(s)	1068
FatI	CATG	3 cut(s)	50, 87, 1036
FauNDI	CATATG	3 cut(s)	23, 481, 731
FbaI	TGATCA	1 cut(s)	600
Fnu4HI	GCNGC	3 cut(s)	516, 619, 809
FokI	GGATG	1 cut(s)	275
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	3 cut(s)	516, 619, 809
FspBI	CTAG	6 cut(s)	171, 180, 257, 303, 389, 1013
GluI	GCNGC	3 cut(s)	516, 619, 809
HaeIII	GGCC	2 cut(s)	776, 811
HapII	CCGG	1 cut(s)	110
Hin1II	CATG	3 cut(s)	54, 91, 1040
HindIII	AAGCTT	2 cut(s)	936, 1000
HinfI	GANTC	4 cut(s)	71, 292, 310, 887
HpaII	CCGG	1 cut(s)	110
Hpy188I	TCNGA	4 cut(s)	76, 900, 954, 961
Hpy188III	TCNNGA	5 cut(s)	289, 342, 688, 719, 739
Hpy99I	CGWCG	1 cut(s)	530
HpyAV	CCTTC	2 cut(s)	519, 941
HpyCH4III	ACNGT	2 cut(s)	151, 1080
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	2 cut(s)	156, 618
HpyF10VI	GCNNNNNNNGC	1 cut(s)	114
HpyF3I	CTNAG	2 cut(s)	75, 802
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	3 cut(s)	54, 91, 1040
Ksp22I	TGATCA	1 cut(s)	600
Kzo9I	GATC	6 cut(s)	202, 441, 457, 600, 684, 748
LmnI	GCTCC	1 cut(s)	421
Lsp1109I	GCAGC	2 cut(s)	502, 630
LweI	GCATC	2 cut(s)	165, 774
MaeI	CTAG	6 cut(s)	171, 180, 257, 303, 389, 1013
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	1 cut(s)	670
MalI	GATC	6 cut(s)	204, 443, 459, 602, 686, 750
MboI	GATC	6 cut(s)	202, 441, 457, 600, 684, 748
MhlI	GDGCHC	1 cut(s)	236
MlsI	TGGCCA	1 cut(s)	776
MluCI	AATT	8 cut(s)	103, 197, 225, 406, 494, 500, 520, 1059
MluNI	TGGCCA	1 cut(s)	776
MlyI	GAGTC	1 cut(s)	881
MmeI	TCCRAC	2 cut(s)	446, 939
MnlI	CCTC	4 cut(s)	349, 542, 719, 818
Mox20I	TGGCCA	1 cut(s)	776
Mph1103I	ATGCAT	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	776
MseI	TTAA	2 cut(s)	498, 912
MslI	CAYNNNNRTG	2 cut(s)	1015, 1041
Msp20I	TGGCCA	1 cut(s)	776
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	114
NciI	CCSGG	1 cut(s)	110
NdeI	CATATG	3 cut(s)	23, 481, 731
NdeII	GATC	6 cut(s)	202, 441, 457, 600, 684, 748
NlaIII	CATG	3 cut(s)	54, 91, 1040
NlaIV	GGNNCC	2 cut(s)	507, 963
NsiI	ATGCAT	1 cut(s)	158
PfeI	GAWTC	3 cut(s)	71, 292, 310
PkrI	GCNGC	3 cut(s)	517, 620, 810
PleI	GAGTC	1 cut(s)	881
PpsI	GAGTC	1 cut(s)	881
PspN4I	GGNNCC	2 cut(s)	507, 963
PspPI	GGNCC	1 cut(s)	505
PstI	CTGCAG	1 cut(s)	620
PvuII	CAGCTG	1 cut(s)	515
RseI	CAYNNNNRTG	2 cut(s)	1015, 1041
SaqAI	TTAA	2 cut(s)	498, 912
SatI	GCNGC	3 cut(s)	516, 619, 809
Sau3AI	GATC	6 cut(s)	202, 441, 457, 600, 684, 748
Sau96I	GGNCC	1 cut(s)	505
SchI	GAGTC	1 cut(s)	881
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	236
SfaNI	GCATC	2 cut(s)	165, 774
SfcI	CTRYAG	1 cut(s)	616
SinI	GGWCC	1 cut(s)	505
SmiI	ATTTAAAT	1 cut(s)	499
SmiMI	CAYNNNNRTG	2 cut(s)	1015, 1041
SmlI	CTYRAG	1 cut(s)	717
SmoI	CTYRAG	1 cut(s)	717
SpeI	ACTAGT	3 cut(s)	179, 388, 1012
Sse9I	AATT	8 cut(s)	103, 197, 225, 406, 494, 500, 520, 1059
SsiI	CCGC	2 cut(s)	664, 808
SspMI	CTAG	6 cut(s)	171, 180, 257, 303, 389, 1013
StyD4I	CCNGG	1 cut(s)	108
SwaI	ATTTAAAT	1 cut(s)	499
TaaI	ACNGT	2 cut(s)	151, 1080
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	3 cut(s)	640, 687, 847
TaqII	GACCGA	1 cut(s)	938
TasI	AATT	8 cut(s)	103, 197, 225, 406, 494, 500, 520, 1059
TauI	GCSGC	1 cut(s)	811
TfiI	GAWTC	3 cut(s)	71, 292, 310
Tru1I	TTAA	2 cut(s)	498, 912
Tru9I	TTAA	2 cut(s)	498, 912
TscAI	CASTG	1 cut(s)	886
TseI	GCWGC	2 cut(s)	515, 618
TspDTI	ATGAA	6 cut(s)	17, 152, 279, 467, 498, 785
TspRI	CASTG	1 cut(s)	886
VpaK11BI	GGWCC	1 cut(s)	505
XapI	RAATTY	3 cut(s)	197, 225, 1059
XcmI	CCANNNNNNNNNTGG	1 cut(s)	303
XspI	CTAG	6 cut(s)	171, 180, 257, 303, 389, 1013
Zsp2I	ATGCAT	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.