FvH4_3g40431

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009673
Physical Location & Seq
Forward (+)
34135061 .. 34136480
1420 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40431.t1

Sequence Viewer

Length: 414 bp
ATGGTGTCTCTCACTAAGGCAAATTGCCTTGTCCATGGTAGCCCTGGCGGCTACAGGCCTGAGGAGAGCATACTATTTCTAAACCCATGGACAAGGCAATTTGCCTTAGTGAGAGACACCATTGGCTGTGGTTGGGAGAGGGGGATTTATGGTCTTGGTTTTGACCAGAACACTAATGACTTCAAGCTTGTCAAGGTGTTGCCTCCAATTTGCATGAAGGAGAAGGTGACACCAAAGGTGGCAGAAGAACTGGTTCGGGTTGTCATCTACTCTTGGAGAGATGCCTCCTGGAGAGAGATCCAGAGTGATGACTGGGGATTCACCCTGCTTCACGACTTTTGGCAAAATTCACCCTTGCAACAAGATTTCCTCTTCATATTTGAAAGCAGCAGTATATATGCAGGTAGTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.75

Weight (kDa)

5.32

Isoelectric Point (pI)

36.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 392
AciI CCGC 1 cut(s) 48
AclWI GGATC 1 cut(s) 292
AcsI RAATTY 1 cut(s) 346
AfaI GTAC 1 cut(s) 409
AgsI TTSAA 2 cut(s) 184, 383
AjnI CCWGG 2 cut(s) 43, 287
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
Alw26I GTCTC 2 cut(s) 12, 108
AlwI GGATC 1 cut(s) 292
AoxI GGCC 1 cut(s) 56
ApeKI GCWGC 1 cut(s) 387
ApoI RAATTY 1 cut(s) 346
Asp700I GAANNNNTTC 1 cut(s) 252
AsuHPI GGTGA 3 cut(s) 238, 313, 342
AxyI CCTNAGG 1 cut(s) 60
BbvI GCAGC 1 cut(s) 399
BciT130I CCWGG 2 cut(s) 45, 289
BcoDI GTCTC 2 cut(s) 12, 108
BfmI CTRYAG 1 cut(s) 52
BfuAI ACCTGC 1 cut(s) 392
BglI GCCNNNNNGGC 1 cut(s) 48
BisI GCNGC 2 cut(s) 49, 388
BlsI GCNGC 2 cut(s) 50, 389
Bme1390I CCNGG 2 cut(s) 45, 289
BmrFI CCNGG 2 cut(s) 45, 289
BmrI ACTGGG 1 cut(s) 322
BmsI GCATC 1 cut(s) 271
BmuI ACTGGG 1 cut(s) 322
BpmI CTGGAG 1 cut(s) 310
BsaJI CCNNGG 3 cut(s) 34, 43, 86
Bse1I ACTGG 2 cut(s) 255, 317
Bse21I CCTNAGG 1 cut(s) 60
BseBI CCWGG 2 cut(s) 45, 289
BseDI CCNNGG 3 cut(s) 34, 43, 86
BseMII CTCAG 1 cut(s) 51
BseNI ACTGG 2 cut(s) 255, 317
BseRI GAGGAG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 399
BshFI GGCC 1 cut(s) 58
BsmAI GTCTC 2 cut(s) 12, 108
BsnI GGCC 1 cut(s) 58
Bsp143I GATC 1 cut(s) 297
Bsp19I CCATGG 2 cut(s) 34, 86
BspACI CCGC 1 cut(s) 48
BspANI GGCC 1 cut(s) 58
BspCNI CTCAG 1 cut(s) 52
BspMI ACCTGC 1 cut(s) 392
BspPI GGATC 1 cut(s) 292
BsrI ACTGG 2 cut(s) 255, 317
BssECI CCNNGG 3 cut(s) 34, 43, 86
BssMI GATC 1 cut(s) 297
BssT1I CCWWGG 2 cut(s) 34, 86
Bst2UI CCWGG 2 cut(s) 45, 289
Bst6I CTCTTC 1 cut(s) 377
BstDEI CTNAG 3 cut(s) 15, 60, 106
BstDSI CCRYGG 2 cut(s) 34, 86
BstKTI GATC 1 cut(s) 300
BstMAI GTCTC 2 cut(s) 12, 108
BstMBI GATC 1 cut(s) 297
BstMWI GCNNNNNNNGC 1 cut(s) 48
BstNI CCWGG 2 cut(s) 45, 289
BstSCI CCNGG 2 cut(s) 43, 287
BstSFI CTRYAG 1 cut(s) 52
BstV1I GCAGC 1 cut(s) 399
BstX2I RGATCY 1 cut(s) 297
BstYI RGATCY 1 cut(s) 297
Bsu36I CCTNAGG 1 cut(s) 60
BsuRI GGCC 1 cut(s) 58
BtgI CCRYGG 2 cut(s) 34, 86
BveI ACCTGC 1 cut(s) 392
Csp6I GTAC 1 cut(s) 408
CviAII CATG 3 cut(s) 35, 87, 214
CviJI RGCY 5 cut(s) 42, 51, 58, 126, 187
CviKI_1 RGCY 5 cut(s) 42, 51, 58, 126, 187
CviQI GTAC 1 cut(s) 408
DdeI CTNAG 3 cut(s) 15, 60, 106
DpnI GATC 1 cut(s) 299
DpnII GATC 1 cut(s) 297
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
Eco130I CCWWGG 2 cut(s) 34, 86
Eco147I AGGCCT 1 cut(s) 58
Eco81I CCTNAGG 1 cut(s) 60
EcoRII CCWGG 2 cut(s) 43, 287
EcoT14I CCWWGG 2 cut(s) 34, 86
ErhI CCWWGG 2 cut(s) 34, 86
FaeI CATG 3 cut(s) 38, 90, 217
FaiI YATR 9 cut(s) 36, 71, 88, 150, 215, 377, 395, 397, 399
FatI CATG 3 cut(s) 34, 86, 213
Fnu4HI GCNGC 2 cut(s) 49, 388
Fsp4HI GCNGC 2 cut(s) 49, 388
GluI GCNGC 2 cut(s) 49, 388
GsuI CTGGAG 1 cut(s) 310
HaeIII GGCC 1 cut(s) 58
Hin1II CATG 3 cut(s) 38, 90, 217
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 1 cut(s) 318
HphI GGTGA 3 cut(s) 238, 313, 342
Hpy188III TCNNGA 2 cut(s) 301, 332
HpyAV CCTTC 2 cut(s) 211, 217
HpyCH4V TGCA 3 cut(s) 213, 358, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 48
HpyF3I CTNAG 3 cut(s) 15, 60, 106
Hsp92II CATG 3 cut(s) 38, 90, 217
Kzo9I GATC 1 cut(s) 297
Lsp1109I GCAGC 1 cut(s) 399
LweI GCATC 1 cut(s) 271
MaeIII GTNAC 1 cut(s) 226
MalI GATC 1 cut(s) 299
MboI GATC 1 cut(s) 297
MboII GAAGA 2 cut(s) 257, 364
MflI RGATCY 1 cut(s) 297
MluCI AATT 4 cut(s) 22, 98, 207, 346
MnlI CCTC 5 cut(s) 55, 132, 213, 295, 380
MroXI GAANNNNTTC 1 cut(s) 252
MspR9I CCNGG 2 cut(s) 45, 289
MvaI CCWGG 2 cut(s) 45, 289
MwoI GCNNNNNNNGC 1 cut(s) 48
NcoI CCATGG 2 cut(s) 34, 86
NdeII GATC 1 cut(s) 297
NlaIII CATG 3 cut(s) 38, 90, 217
NmuCI GTSAC 1 cut(s) 226
PceI AGGCCT 1 cut(s) 58
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 1 cut(s) 318
PfoI TCCNGGA 1 cut(s) 287
PkrI GCNGC 2 cut(s) 50, 389
Psp6I CCWGG 2 cut(s) 43, 287
PspGI CCWGG 2 cut(s) 43, 287
PsuI RGATCY 1 cut(s) 297
RsaI GTAC 1 cut(s) 409
RsaNI GTAC 1 cut(s) 408
SatI GCNGC 2 cut(s) 49, 388
Sau3AI GATC 1 cut(s) 297
ScrFI CCNGG 2 cut(s) 45, 289
SetI ASST 6 cut(s) 189, 198, 228, 240, 406, 413
SfaNI GCATC 1 cut(s) 271
SfcI CTRYAG 1 cut(s) 52
Sse9I AATT 4 cut(s) 22, 98, 207, 346
SseBI AGGCCT 1 cut(s) 58
SsiI CCGC 1 cut(s) 48
StuI AGGCCT 1 cut(s) 58
StyD4I CCNGG 2 cut(s) 43, 287
StyI CCWWGG 2 cut(s) 34, 86
TasI AATT 4 cut(s) 22, 98, 207, 346
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 1 cut(s) 318
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 1 cut(s) 387
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 2 cut(s) 230, 364
XapI RAATTY 1 cut(s) 346
XcmI CCANNNNNNNNNTGG 1 cut(s) 41
XmnI GAANNNNTTC 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.