Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0009673

Physical Location & Seq

Genomic Coordinates Reverse (-)

78080568 .. 78083317

Gene Structure 2750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G044380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGAAGAGGAAGCACTGTGAATGTTGCCATGACATATGCGATAGTGAAAGTTGTTGCACTGGCTGTAGCTCCAAGAGAAGACTGGAAAGAAAACTTGGAGACTGTAATGACCTGCCACCAAAGGCTGAACTTGGAGATAGCAACGATTGTTTGGAGAGGATTCTTGTTGAGCAGCCACTGAGGATGTTAGCTCAATACCAGATGGTATCAAAACAGTGGAAGGCTCTCATTAGCAAACCAACATTTCAACAAATCCTTGCTGAAAAATCTGAGGCAAACAGCTTGTTTGTGAGTTATTTGAAGACCGATAAGGTAGGAATTGTAAGGCTGATTCACAACCGATATTCAGTGACCAATTATAGCCTCCCTCCATCTAGGTCTGCACTTCCCCTTAAGAATGTGTTAGGGTCATGCTACGGCTTGGTATGCTTGGGAAATACCAGCCGAGGAGGATACAGAGCTGAGGAGGATATACTCCTTCTCAACCCCTGCACAAAAAAATTGAGATTAATCAAGGATACAATACATTGTGGACTGGAGAGGGGGCACTATGGCCTCGGTTTTGATAGAAAAGCACAAGATTTCAAAATTGCGAAAGTGTGCACTCCGCTGGTTAGGCACTCCAAGAAGAAGCTCACTCCAAAGAGGGAAGCAGAGATGGTGCATATTATAATCTACTCATGGAAAGATTCTTGCTGGCGTGAAACTTATTTTGAAGATTGGGGTTTCAATTTGGTTCATTACCCGGGCATGTTTCTTGACGGCAAAATCTACTGGCCAGGGGAGGTTTGGGAGATGCAAGGGATATTTCTCAGACCACAGGGTCACCAAAACTCCTTGGTAAGCTTTGATGTGTCATCTGAAACGCTTGGCTGCATAAACCTGCCAGACGACCTCCAGTCTGAATATTGCAGCTTTGGAGTTGTTGCTGGAACATTGACTGCATGCGTCTGCGGAGAAAAAACTGAAGTTTGGCAATACACAGAGAATAATTTCAGAAGGAGGGCAATACACAGAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

340

Amino Acids

38.94

Weight (kDa)

8.53

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	116 - 301	1.3e-08	F-box associated beta propeller domain
FBA_1	PF07734	134 - 301	8.7e-14	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009673)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40430 FvH4_3g40430 FvH4_3g40431
rosa_chinensis	RchiOBHm_Chr5g0073081 RchiOBHm_Chr6g0263631 RchiOBHm_Chr6g0263701
rosa_laevigata	RLG00000014321 RLG00000014323 RLG00000014325
rosa_roxburghii	Rroxscaffold_176G00431150 Rroxscaffold_1G00008130 Rroxscaffold_7G00204030 Rroxscaffold_7G00204050 Rroxscaffold_7G00204090
rosa_samantha	Rh5AG477900 Rh5BG498500 Rh5CG521900 Rh5DG510700 Rh6BG121300 Rh6CG119700 Rh6DG107700
rosa_wichuraiana	Rw5G044380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	671
AasI	GACNNNNNNGTC	1 cut(s)	822
Acc36I	ACCTGC	2 cut(s)	120, 891
AciI	CCGC	2 cut(s)	608, 954
AcoI	YGGCCR	1 cut(s)	776
AcuI	CTGAAG	1 cut(s)	987
AflII	CTTAAG	1 cut(s)	392
AgsI	TTSAA	5 cut(s)	248, 301, 586, 716, 730
AhdI	GACNNNNNGTC	1 cut(s)	898
AjnI	CCWGG	1 cut(s)	778
AjuI	GAANNNNNNNTTGG	2 cut(s)	78, 110
AluBI	AGCT	7 cut(s)	69, 191, 282, 461, 634, 846, 915
AluI	AGCT	7 cut(s)	69, 191, 282, 461, 634, 846, 915
Alw21I	GWGCWC	1 cut(s)	605
Alw26I	GTCTC	1 cut(s)	93
Alw44I	GTGCAC	1 cut(s)	601
AlwNI	CAGNNNCTG	1 cut(s)	178
Ama87I	CYCGRG	1 cut(s)	745
AoxI	GGCC	2 cut(s)	553, 776
ApaLI	GTGCAC	1 cut(s)	601
ApeKI	GCWGC	3 cut(s)	172, 873, 912
AseI	ATTAAT	1 cut(s)	509
Asp700I	GAANNNNTTC	1 cut(s)	992
AsuC2I	CCSGG	2 cut(s)	746, 747
AsuHPI	GGTGA	1 cut(s)	818
AvaI	CYCGRG	1 cut(s)	745
BaeGI	GKGCMC	2 cut(s)	549, 605
BalI	TGGCCA	1 cut(s)	778
BbsI	GAAGAC	2 cut(s)	85, 308
Bbv12I	GWGCWC	1 cut(s)	605
BbvCI	CCTCAGC	1 cut(s)	462
BbvI	GCAGC	3 cut(s)	184, 860, 924
BccI	CCATC	3 cut(s)	196, 379, 652
BceAI	ACGGC	2 cut(s)	433, 778
BciT130I	CCWGG	1 cut(s)	780
BciVI	GTATCC	2 cut(s)	446, 511
BcnI	CCSGG	2 cut(s)	746, 747
BcoDI	GTCTC	1 cut(s)	93
BfaI	CTAG	1 cut(s)	375
BfmI	CTRYAG	1 cut(s)	64
BfrI	CTTAAG	1 cut(s)	392
BfuAI	ACCTGC	2 cut(s)	120, 891
BfuI	GTATCC	2 cut(s)	446, 511
BisI	GCNGC	3 cut(s)	173, 874, 913
BlsI	GCNGC	3 cut(s)	174, 875, 914
Bme1390I	CCNGG	3 cut(s)	746, 747, 780
BmeRI	GACNNNNNGTC	1 cut(s)	898
BmeT110I	CYCGRG	1 cut(s)	745
BmrFI	CCNGG	3 cut(s)	746, 747, 780
BmsI	GCATC	1 cut(s)	786
BpiI	GAAGAC	2 cut(s)	85, 308
BpmI	CTGGAG	2 cut(s)	557, 881
Bpu10I	CCTNAGC	1 cut(s)	462
BpuMI	CCSGG	2 cut(s)	746, 747
BsaJI	CCNNGG	5 cut(s)	445, 556, 745, 779, 837
BsaXI	ACNNNNNCTCC	2 cut(s)	818, 848
Bse1I	ACTGG	5 cut(s)	64, 87, 540, 779, 898
BseBI	CCWGG	1 cut(s)	780
BseDI	CCNNGG	5 cut(s)	445, 556, 745, 779, 837
BseGI	GGATG	1 cut(s)	189
BseMII	CTCAG	4 cut(s)	170, 261, 453, 826
BseNI	ACTGG	5 cut(s)	64, 87, 540, 779, 898
BseRI	GAGGAG	2 cut(s)	462, 479
BseSI	GKGCMC	2 cut(s)	549, 605
BseXI	GCAGC	3 cut(s)	184, 860, 924
BsgI	GTGCAG	2 cut(s)	366, 475
BshFI	GGCC	2 cut(s)	555, 778
BsiHKAI	GWGCWC	1 cut(s)	605
BsiHKCI	CYCGRG	1 cut(s)	745
BsiSI	CCGG	1 cut(s)	746
BsmAI	GTCTC	1 cut(s)	93
BsnI	GGCC	2 cut(s)	555, 778
BsoBI	CYCGRG	1 cut(s)	745
Bsp1286I	GDGCHC	2 cut(s)	549, 605
BspACI	CCGC	2 cut(s)	608, 954
BspANI	GGCC	2 cut(s)	555, 778
BspCNI	CTCAG	4 cut(s)	171, 262, 454, 825
BspMI	ACCTGC	2 cut(s)	120, 891
BspTI	CTTAAG	1 cut(s)	392
BsrI	ACTGG	5 cut(s)	64, 87, 540, 779, 898
BssECI	CCNNGG	5 cut(s)	445, 556, 745, 779, 837
BssT1I	CCWWGG	1 cut(s)	837
Bst2UI	CCWGG	1 cut(s)	780
Bst4CI	ACNGT	3 cut(s)	17, 104, 216
BstAFI	CTTAAG	1 cut(s)	392
BstC8I	GCNNGC	2 cut(s)	698, 946
BstDEI	CTNAG	4 cut(s)	179, 270, 462, 812
BstEII	GGTNACC	1 cut(s)	824
BstF5I	GGATG	1 cut(s)	189
BstMAI	GTCTC	1 cut(s)	93
BstMWI	GCNNNNNNNGC	2 cut(s)	426, 616
BstNI	CCWGG	1 cut(s)	780
BstNSI	RCATGY	2 cut(s)	754, 948
BstPI	GGTNACC	1 cut(s)	824
BstSCI	CCNGG	3 cut(s)	744, 745, 778
BstSFI	CTRYAG	1 cut(s)	64
BstSLI	GKGCMC	2 cut(s)	549, 605
BstV1I	GCAGC	3 cut(s)	184, 860, 924
BstV2I	GAAGAC	2 cut(s)	85, 308
BsuI	GTATCC	2 cut(s)	446, 511
BsuRI	GGCC	2 cut(s)	555, 778
BtsCI	GGATG	1 cut(s)	189
BtsIMutI	CAGTG	5 cut(s)	13, 57, 176, 221, 354
BveI	ACCTGC	2 cut(s)	120, 891
Cac8I	GCNNGC	2 cut(s)	698, 946
CaiI	CAGNNNCTG	1 cut(s)	178
Cfr9I	CCCGGG	1 cut(s)	745
CseI	GACGC	1 cut(s)	937
CviAII	CATG	5 cut(s)	29, 411, 681, 751, 945
DdeI	CTNAG	4 cut(s)	179, 270, 462, 812
DrdI	GACNNNNNNGTC	1 cut(s)	822
DriI	GACNNNNNGTC	1 cut(s)	898
DseDI	GACNNNNNNGTC	1 cut(s)	822
EaeI	YGGCCR	1 cut(s)	776
Eam1105I	GACNNNNNGTC	1 cut(s)	898
Eco130I	CCWWGG	1 cut(s)	837
Eco57I	CTGAAG	1 cut(s)	987
Eco88I	CYCGRG	1 cut(s)	745
Eco91I	GGTNACC	1 cut(s)	824
EcoO65I	GGTNACC	1 cut(s)	824
EcoRII	CCWGG	1 cut(s)	778
EcoT14I	CCWWGG	1 cut(s)	837
ErhI	CCWWGG	1 cut(s)	837
FaeI	CATG	5 cut(s)	32, 414, 684, 754, 948
FatI	CATG	5 cut(s)	28, 410, 680, 750, 944
FauNDI	CATATG	1 cut(s)	35
Fnu4HI	GCNGC	3 cut(s)	173, 874, 913
FokI	GGATG	1 cut(s)	196
Fsp4HI	GCNGC	3 cut(s)	173, 874, 913
FspBI	CTAG	1 cut(s)	375
GluI	GCNGC	3 cut(s)	173, 874, 913
GsuI	CTGGAG	2 cut(s)	557, 881
HaeIII	GGCC	2 cut(s)	555, 778
HapII	CCGG	1 cut(s)	746
HgaI	GACGC	1 cut(s)	937
Hin1II	CATG	5 cut(s)	32, 414, 684, 754, 948
HindIII	AAGCTT	1 cut(s)	844
HinfI	GANTC	3 cut(s)	160, 331, 689
HpaII	CCGG	1 cut(s)	746
HphI	GGTGA	1 cut(s)	818
Hpy166II	GTNNAC	2 cut(s)	533, 603
Hpy188I	TCNGA	5 cut(s)	271, 815, 862, 904, 998
Hpy188III	TCNNGA	1 cut(s)	758
Hpy8I	GTNNAC	2 cut(s)	533, 603
HpyAV	CCTTC	3 cut(s)	214, 488, 993
HpyCH4III	ACNGT	3 cut(s)	17, 104, 216
HpyCH4V	TGCA	9 cut(s)	57, 383, 492, 603, 664, 799, 876, 912, 944
HpyF10VI	GCNNNNNNNGC	2 cut(s)	426, 616
HpyF3I	CTNAG	4 cut(s)	179, 270, 462, 812
Hsp92II	CATG	5 cut(s)	32, 414, 684, 754, 948
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	3 cut(s)	184, 860, 924
LweI	GCATC	1 cut(s)	786
MaeI	CTAG	1 cut(s)	375
MaeIII	GTNAC	2 cut(s)	349, 824
MboII	GAAGA	5 cut(s)	16, 90, 313, 640, 728
MhlI	GDGCHC	2 cut(s)	549, 605
MlsI	TGGCCA	1 cut(s)	778
MluCI	AATT	6 cut(s)	318, 355, 500, 588, 730, 991
MluNI	TGGCCA	1 cut(s)	778
Mox20I	TGGCCA	1 cut(s)	778
MroXI	GAANNNNTTC	1 cut(s)	992
MscI	TGGCCA	1 cut(s)	778
MseI	TTAA	2 cut(s)	393, 509
Msp20I	TGGCCA	1 cut(s)	778
MspA1I	CMGCKG	1 cut(s)	610
MspCI	CTTAAG	1 cut(s)	392
MspI	CCGG	1 cut(s)	746
MspR9I	CCNGG	3 cut(s)	746, 747, 780
MvaI	CCWGG	1 cut(s)	780
MwoI	GCNNNNNNNGC	2 cut(s)	426, 616
NciI	CCSGG	2 cut(s)	746, 747
NdeI	CATATG	1 cut(s)	35
NlaIII	CATG	5 cut(s)	32, 414, 684, 754, 948
NmeAIII	GCCGAG	1 cut(s)	470
NmuCI	GTSAC	2 cut(s)	349, 824
NspI	RCATGY	2 cut(s)	754, 948
PaeI	GCATGC	1 cut(s)	948
PdmI	GAANNNNTTC	1 cut(s)	992
PfeI	GAWTC	3 cut(s)	160, 331, 689
PkrI	GCNGC	3 cut(s)	174, 875, 914
PshBI	ATTAAT	1 cut(s)	509
PsiI	TTATAA	1 cut(s)	671
Psp6I	CCWGG	1 cut(s)	778
PspEI	GGTNACC	1 cut(s)	824
PspGI	CCWGG	1 cut(s)	778
PstNI	CAGNNNCTG	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	393, 509
SatI	GCNGC	3 cut(s)	173, 874, 913
ScrFI	CCNGG	3 cut(s)	746, 747, 780
SduI	GDGCHC	2 cut(s)	549, 605
SfaNI	GCATC	1 cut(s)	786
SfcI	CTRYAG	1 cut(s)	64
SmaI	CCCGGG	1 cut(s)	747
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
SphI	GCATGC	1 cut(s)	948
Sse9I	AATT	6 cut(s)	318, 355, 500, 588, 730, 991
SsiI	CCGC	2 cut(s)	608, 954
SspI	AATATT	1 cut(s)	908
SspMI	CTAG	1 cut(s)	375
StyD4I	CCNGG	3 cut(s)	744, 745, 778
StyI	CCWWGG	1 cut(s)	837
TaaI	ACNGT	3 cut(s)	17, 104, 216
TaqII	GACCGA	1 cut(s)	320
TasI	AATT	6 cut(s)	318, 355, 500, 588, 730, 991
TfiI	GAWTC	3 cut(s)	160, 331, 689
Tru1I	TTAA	2 cut(s)	393, 509
Tru9I	TTAA	2 cut(s)	393, 509
TscAI	CASTG	5 cut(s)	20, 64, 183, 221, 354
TseFI	GTSAC	2 cut(s)	349, 824
TseI	GCWGC	3 cut(s)	172, 873, 912
Tsp45I	GTSAC	2 cut(s)	349, 824
TspDTI	ATGAA	2 cut(s)	17, 728
TspMI	CCCGGG	1 cut(s)	745
TspRI	CASTG	5 cut(s)	20, 64, 183, 221, 354
Vha464I	CTTAAG	1 cut(s)	392
VneI	GTGCAC	1 cut(s)	601
VspI	ATTAAT	1 cut(s)	509
XceI	RCATGY	2 cut(s)	754, 948
XcmI	CCANNNNNNNNNTGG	2 cut(s)	79, 786
XmaI	CCCGGG	1 cut(s)	745
XmnI	GAANNNNTTC	1 cut(s)	992
XspI	CTAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.