divergent subfamily of APPLE domains
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g40430 FvH4_3g40430 FvH4_3g40431 |
| rosa_chinensis | RchiOBHm_Chr5g0073081 RchiOBHm_Chr6g0263631 RchiOBHm_Chr6g0263701 |
| rosa_laevigata | RLG00000014321 RLG00000014323 RLG00000014325 |
| rosa_roxburghii | Rroxscaffold_176G00431150 Rroxscaffold_1G00008130 Rroxscaffold_7G00204030 Rroxscaffold_7G00204050 Rroxscaffold_7G00204090 |
| rosa_samantha | Rh5AG477900 Rh5BG498500 Rh5CG521900 Rh5DG510700 Rh6BG121300 Rh6CG119700 Rh6DG107700 |
| rosa_wichuraiana | Rw5G044380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 267 |
| Acc36I | ACCTGC | 1 cut(s) | 87 |
| AcsI | RAATTY | 4 cut(s) | 212, 240, 394, 509 |
| AhlI | ACTAGT | 3 cut(s) | 194, 403, 1027 |
| AjnI | CCWGG | 1 cut(s) | 1132 |
| AluBI | AGCT | 8 cut(s) | 140, 295, 412, 530, 712, 953, 1017, 1148 |
| AluI | AGCT | 8 cut(s) | 140, 295, 412, 530, 712, 953, 1017, 1148 |
| Alw26I | GTCTC | 2 cut(s) | 118, 632 |
| ApeKI | GCWGC | 3 cut(s) | 530, 633, 823 |
| ApoI | RAATTY | 4 cut(s) | 212, 240, 394, 509 |
| AspS9I | GGNCC | 1 cut(s) | 520 |
| AsuHPI | GGTGA | 1 cut(s) | 53 |
| AvaII | GGWCC | 1 cut(s) | 520 |
| BanII | GRGCYC | 1 cut(s) | 251 |
| BbsI | GAAGAC | 1 cut(s) | 906 |
| BbvI | GCAGC | 3 cut(s) | 517, 645, 835 |
| BccI | CCATC | 1 cut(s) | 857 |
| BciT130I | CCWGG | 1 cut(s) | 1134 |
| BclI | TGATCA | 1 cut(s) | 615 |
| BcoDI | GTCTC | 2 cut(s) | 118, 632 |
| BcuI | ACTAGT | 3 cut(s) | 194, 403, 1027 |
| BfaI | CTAG | 6 cut(s) | 186, 195, 272, 318, 404, 1028 |
| BfmI | CTRYAG | 1 cut(s) | 631 |
| BfuAI | ACCTGC | 1 cut(s) | 87 |
| BisI | GCNGC | 3 cut(s) | 531, 634, 824 |
| BlsI | GCNGC | 3 cut(s) | 532, 635, 825 |
| Bme1390I | CCNGG | 1 cut(s) | 1134 |
| Bme18I | GGWCC | 1 cut(s) | 520 |
| BmgT120I | GGNCC | 1 cut(s) | 520 |
| BmiI | GGNNCC | 2 cut(s) | 522, 978 |
| BmrFI | CCNGG | 1 cut(s) | 1134 |
| BmrI | ACTGGG | 1 cut(s) | 353 |
| BmsI | GCATC | 2 cut(s) | 180, 789 |
| BmuI | ACTGGG | 1 cut(s) | 353 |
| BpiI | GAAGAC | 1 cut(s) | 906 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1082 |
| BpuEI | CTTGAG | 1 cut(s) | 717 |
| BsaBI | GATNNNNATC | 1 cut(s) | 329 |
| BsaI | GGTCTC | 1 cut(s) | 118 |
| BsaJI | CCNNGG | 1 cut(s) | 1133 |
| Bse1I | ACTGG | 2 cut(s) | 114, 348 |
| Bse8I | GATNNNNATC | 1 cut(s) | 329 |
| BseBI | CCWGG | 1 cut(s) | 1134 |
| BseDI | CCNNGG | 1 cut(s) | 1133 |
| BseGI | GGATG | 1 cut(s) | 283 |
| BseJI | GATNNNNATC | 1 cut(s) | 329 |
| BseMII | CTCAG | 2 cut(s) | 138, 907 |
| BseNI | ACTGG | 2 cut(s) | 114, 348 |
| BseXI | GCAGC | 3 cut(s) | 517, 645, 835 |
| BsgI | GTGCAG | 1 cut(s) | 842 |
| BsmAI | GTCTC | 2 cut(s) | 118, 632 |
| Bso31I | GGTCTC | 1 cut(s) | 118 |
| Bsp1286I | GDGCHC | 1 cut(s) | 251 |
| Bsp143I | GATC | 6 cut(s) | 217, 456, 472, 615, 699, 763 |
| BspCNI | CTCAG | 2 cut(s) | 139, 906 |
| BspLI | GGNNCC | 2 cut(s) | 522, 978 |
| BspMAI | CTGCAG | 1 cut(s) | 635 |
| BspMI | ACCTGC | 1 cut(s) | 87 |
| BspTNI | GGTCTC | 1 cut(s) | 118 |
| BsrI | ACTGG | 2 cut(s) | 114, 348 |
| BssECI | CCNNGG | 1 cut(s) | 1133 |
| BssMI | GATC | 6 cut(s) | 217, 456, 472, 615, 699, 763 |
| Bst2UI | CCWGG | 1 cut(s) | 1134 |
| Bst4CI | ACNGT | 1 cut(s) | 166 |
| Bst6I | CTCTTC | 2 cut(s) | 442, 643 |
| BstC8I | GCNNGC | 1 cut(s) | 721 |
| BstDEI | CTNAG | 3 cut(s) | 147, 893, 1082 |
| BstF5I | GGATG | 1 cut(s) | 283 |
| BstKTI | GATC | 6 cut(s) | 220, 459, 475, 618, 702, 766 |
| BstMAI | GTCTC | 2 cut(s) | 118, 632 |
| BstMBI | GATC | 6 cut(s) | 217, 456, 472, 615, 699, 763 |
| BstNI | CCWGG | 1 cut(s) | 1134 |
| BstSCI | CCNGG | 1 cut(s) | 1132 |
| BstSFI | CTRYAG | 1 cut(s) | 631 |
| BstV1I | GCAGC | 3 cut(s) | 517, 645, 835 |
| BstV2I | GAAGAC | 1 cut(s) | 906 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1043 |
| BtsCI | GGATG | 1 cut(s) | 283 |
| BtsIMutI | CAGTG | 2 cut(s) | 543, 901 |
| BveI | ACCTGC | 1 cut(s) | 87 |
| Cac8I | GCNNGC | 1 cut(s) | 721 |
| Cfr13I | GGNCC | 1 cut(s) | 520 |
| CviAII | CATG | 4 cut(s) | 10, 123, 160, 1052 |
| DdeI | CTNAG | 3 cut(s) | 147, 893, 1082 |
| DpnI | GATC | 6 cut(s) | 219, 458, 474, 617, 701, 765 |
| DpnII | GATC | 6 cut(s) | 217, 456, 472, 615, 699, 763 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 267 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 267 |
| Eam1104I | CTCTTC | 2 cut(s) | 442, 643 |
| EarI | CTCTTC | 2 cut(s) | 442, 643 |
| Eco24I | GRGCYC | 1 cut(s) | 251 |
| Eco31I | GGTCTC | 1 cut(s) | 118 |
| Eco47I | GGWCC | 1 cut(s) | 520 |
| EcoRII | CCWGG | 1 cut(s) | 1132 |
| EcoT22I | ATGCAT | 1 cut(s) | 173 |
| EcoT38I | GRGCYC | 1 cut(s) | 251 |
| FaeI | CATG | 4 cut(s) | 13, 126, 163, 1055 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 792, 824 |
| FatI | CATG | 4 cut(s) | 9, 122, 159, 1051 |
| FauNDI | CATATG | 3 cut(s) | 95, 496, 746 |
| FbaI | TGATCA | 1 cut(s) | 615 |
| Fnu4HI | GCNGC | 3 cut(s) | 531, 634, 824 |
| FokI | GGATG | 1 cut(s) | 290 |
| FriOI | GRGCYC | 1 cut(s) | 251 |
| Fsp4HI | GCNGC | 3 cut(s) | 531, 634, 824 |
| FspBI | CTAG | 6 cut(s) | 186, 195, 272, 318, 404, 1028 |
| GluI | GCNGC | 3 cut(s) | 531, 634, 824 |
| Hin1II | CATG | 4 cut(s) | 13, 126, 163, 1055 |
| HindIII | AAGCTT | 2 cut(s) | 951, 1015 |
| HinfI | GANTC | 4 cut(s) | 143, 307, 325, 902 |
| HphI | GGTGA | 1 cut(s) | 53 |
| Hpy166II | GTNNAC | 1 cut(s) | 61 |
| Hpy188I | TCNGA | 4 cut(s) | 148, 915, 969, 976 |
| Hpy188III | TCNNGA | 8 cut(s) | 70, 304, 357, 703, 734, 754, 1072, 1090 |
| Hpy8I | GTNNAC | 1 cut(s) | 61 |
| HpyAV | CCTTC | 1 cut(s) | 956 |
| HpyCH4III | ACNGT | 1 cut(s) | 166 |
| HpyCH4V | TGCA | 3 cut(s) | 171, 633, 823 |
| HpyF3I | CTNAG | 3 cut(s) | 147, 893, 1082 |
| Hsp92II | CATG | 4 cut(s) | 13, 126, 163, 1055 |
| Ksp22I | TGATCA | 1 cut(s) | 615 |
| Kzo9I | GATC | 6 cut(s) | 217, 456, 472, 615, 699, 763 |
| LmnI | GCTCC | 2 cut(s) | 436, 777 |
| Lsp1109I | GCAGC | 3 cut(s) | 517, 645, 835 |
| LweI | GCATC | 2 cut(s) | 180, 789 |
| MaeI | CTAG | 6 cut(s) | 186, 195, 272, 318, 404, 1028 |
| MaeIII | GTNAC | 2 cut(s) | 541, 685 |
| MalI | GATC | 6 cut(s) | 219, 458, 474, 617, 701, 765 |
| MboI | GATC | 6 cut(s) | 217, 456, 472, 615, 699, 763 |
| MhlI | GDGCHC | 1 cut(s) | 251 |
| MluCI | AATT | 7 cut(s) | 17, 212, 240, 394, 421, 509, 535 |
| MlyI | GAGTC | 1 cut(s) | 896 |
| MmeI | TCCRAC | 3 cut(s) | 396, 461, 954 |
| MnlI | CCTC | 5 cut(s) | 364, 557, 734, 833, 902 |
| Mph1103I | ATGCAT | 1 cut(s) | 173 |
| MseI | TTAA | 2 cut(s) | 927, 1150 |
| MslI | CAYNNNNRTG | 3 cut(s) | 71, 1030, 1056 |
| MspR9I | CCNGG | 1 cut(s) | 1134 |
| MvaI | CCWGG | 1 cut(s) | 1134 |
| NdeI | CATATG | 3 cut(s) | 95, 496, 746 |
| NdeII | GATC | 6 cut(s) | 217, 456, 472, 615, 699, 763 |
| NlaIII | CATG | 4 cut(s) | 13, 126, 163, 1055 |
| NlaIV | GGNNCC | 2 cut(s) | 522, 978 |
| NmuCI | GTSAC | 1 cut(s) | 541 |
| NsiI | ATGCAT | 1 cut(s) | 173 |
| PfeI | GAWTC | 3 cut(s) | 143, 307, 325 |
| PkrI | GCNGC | 3 cut(s) | 532, 635, 825 |
| PleI | GAGTC | 1 cut(s) | 896 |
| PpsI | GAGTC | 1 cut(s) | 896 |
| Psp6I | CCWGG | 1 cut(s) | 1132 |
| PspGI | CCWGG | 1 cut(s) | 1132 |
| PspN4I | GGNNCC | 2 cut(s) | 522, 978 |
| PspPI | GGNCC | 1 cut(s) | 520 |
| PstI | CTGCAG | 1 cut(s) | 635 |
| RseI | CAYNNNNRTG | 3 cut(s) | 71, 1030, 1056 |
| SaqAI | TTAA | 2 cut(s) | 927, 1150 |
| SatI | GCNGC | 3 cut(s) | 531, 634, 824 |
| Sau3AI | GATC | 6 cut(s) | 217, 456, 472, 615, 699, 763 |
| Sau96I | GGNCC | 1 cut(s) | 520 |
| SchI | GAGTC | 1 cut(s) | 896 |
| ScrFI | CCNGG | 1 cut(s) | 1134 |
| SduI | GDGCHC | 1 cut(s) | 251 |
| SfaNI | GCATC | 2 cut(s) | 180, 789 |
| SfcI | CTRYAG | 1 cut(s) | 631 |
| SinI | GGWCC | 1 cut(s) | 520 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 71, 1030, 1056 |
| SmlI | CTYRAG | 1 cut(s) | 732 |
| SmoI | CTYRAG | 1 cut(s) | 732 |
| SpeI | ACTAGT | 3 cut(s) | 194, 403, 1027 |
| Sse9I | AATT | 7 cut(s) | 17, 212, 240, 394, 421, 509, 535 |
| SspMI | CTAG | 6 cut(s) | 186, 195, 272, 318, 404, 1028 |
| StyD4I | CCNGG | 1 cut(s) | 1132 |
| TaaI | ACNGT | 1 cut(s) | 166 |
| TaqI | TCGA | 3 cut(s) | 655, 702, 862 |
| TaqII | GACCGA | 1 cut(s) | 953 |
| TasI | AATT | 7 cut(s) | 17, 212, 240, 394, 421, 509, 535 |
| TfiI | GAWTC | 3 cut(s) | 143, 307, 325 |
| Tru1I | TTAA | 2 cut(s) | 927, 1150 |
| Tru9I | TTAA | 2 cut(s) | 927, 1150 |
| TscAI | CASTG | 2 cut(s) | 550, 901 |
| TseFI | GTSAC | 1 cut(s) | 541 |
| TseI | GCWGC | 3 cut(s) | 530, 633, 823 |
| Tsp45I | GTSAC | 1 cut(s) | 541 |
| TspDTI | ATGAA | 7 cut(s) | 26, 89, 167, 294, 482, 513, 800 |
| TspRI | CASTG | 2 cut(s) | 550, 901 |
| VpaK11BI | GGWCC | 1 cut(s) | 520 |
| XapI | RAATTY | 4 cut(s) | 212, 240, 394, 509 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 318 |
| XspI | CTAG | 6 cut(s) | 186, 195, 272, 318, 404, 1028 |
| Zsp2I | ATGCAT | 1 cut(s) | 173 |