divergent subfamily of APPLE domains
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g40430 FvH4_3g40430 FvH4_3g40431 |
| rosa_chinensis | RchiOBHm_Chr5g0073081 RchiOBHm_Chr6g0263631 RchiOBHm_Chr6g0263701 |
| rosa_laevigata | RLG00000014321 RLG00000014323 RLG00000014325 |
| rosa_roxburghii | Rroxscaffold_176G00431150 Rroxscaffold_1G00008130 Rroxscaffold_7G00204030 Rroxscaffold_7G00204050 Rroxscaffold_7G00204090 |
| rosa_samantha | Rh5AG477900 Rh5BG498500 Rh5CG521900 Rh5DG510700 Rh6BG121300 Rh6CG119700 Rh6DG107700 |
| rosa_wichuraiana | Rw5G044380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 488 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 639 |
| Acc36I | ACCTGC | 1 cut(s) | 708 |
| AciI | CCGC | 1 cut(s) | 425 |
| AcoI | YGGCCR | 2 cut(s) | 49, 593 |
| AflII | CTTAAG | 1 cut(s) | 209 |
| AgsI | TTSAA | 5 cut(s) | 65, 118, 403, 533, 547 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 715 |
| AjnI | CCWGG | 1 cut(s) | 595 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 45, 77 |
| AluBI | AGCT | 6 cut(s) | 8, 99, 278, 451, 663, 732 |
| AluI | AGCT | 6 cut(s) | 8, 99, 278, 451, 663, 732 |
| Alw21I | GWGCWC | 1 cut(s) | 422 |
| Alw44I | GTGCAC | 1 cut(s) | 418 |
| Ama87I | CYCGRG | 1 cut(s) | 562 |
| AoxI | GGCC | 3 cut(s) | 49, 370, 593 |
| ApaLI | GTGCAC | 1 cut(s) | 418 |
| ApeKI | GCWGC | 2 cut(s) | 690, 729 |
| AseI | ATTAAT | 1 cut(s) | 326 |
| AsuC2I | CCSGG | 2 cut(s) | 563, 564 |
| AsuHPI | GGTGA | 1 cut(s) | 635 |
| AvaI | CYCGRG | 1 cut(s) | 562 |
| BaeGI | GKGCMC | 2 cut(s) | 366, 422 |
| BalI | TGGCCA | 2 cut(s) | 51, 595 |
| BbsI | GAAGAC | 1 cut(s) | 125 |
| Bbv12I | GWGCWC | 1 cut(s) | 422 |
| BbvCI | CCTCAGC | 1 cut(s) | 279 |
| BbvI | GCAGC | 2 cut(s) | 677, 741 |
| BccI | CCATC | 3 cut(s) | 13, 196, 469 |
| BceAI | ACGGC | 2 cut(s) | 250, 595 |
| BciT130I | CCWGG | 1 cut(s) | 597 |
| BciVI | GTATCC | 2 cut(s) | 263, 328 |
| BcnI | CCSGG | 2 cut(s) | 563, 564 |
| BfaI | CTAG | 1 cut(s) | 192 |
| BfrI | CTTAAG | 1 cut(s) | 209 |
| BfuAI | ACCTGC | 1 cut(s) | 708 |
| BfuI | GTATCC | 2 cut(s) | 263, 328 |
| BisI | GCNGC | 2 cut(s) | 691, 730 |
| BlsI | GCNGC | 2 cut(s) | 692, 731 |
| Bme1390I | CCNGG | 3 cut(s) | 563, 564, 597 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 715 |
| BmeT110I | CYCGRG | 1 cut(s) | 562 |
| BmrFI | CCNGG | 3 cut(s) | 563, 564, 597 |
| BmsI | GCATC | 1 cut(s) | 603 |
| BpiI | GAAGAC | 1 cut(s) | 125 |
| BpmI | CTGGAG | 2 cut(s) | 374, 698 |
| Bpu10I | CCTNAGC | 1 cut(s) | 279 |
| BpuMI | CCSGG | 2 cut(s) | 563, 564 |
| BsaJI | CCNNGG | 5 cut(s) | 262, 373, 562, 596, 654 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 635, 665 |
| Bse1I | ACTGG | 3 cut(s) | 357, 596, 715 |
| BseBI | CCWGG | 1 cut(s) | 597 |
| BseDI | CCNNGG | 5 cut(s) | 262, 373, 562, 596, 654 |
| BseMII | CTCAG | 3 cut(s) | 78, 270, 643 |
| BseNI | ACTGG | 3 cut(s) | 357, 596, 715 |
| BseRI | GAGGAG | 2 cut(s) | 279, 296 |
| BseSI | GKGCMC | 2 cut(s) | 366, 422 |
| BseXI | GCAGC | 2 cut(s) | 677, 741 |
| BsgI | GTGCAG | 2 cut(s) | 183, 292 |
| BshFI | GGCC | 3 cut(s) | 51, 372, 595 |
| BsiHKAI | GWGCWC | 1 cut(s) | 422 |
| BsiHKCI | CYCGRG | 1 cut(s) | 562 |
| BsiSI | CCGG | 1 cut(s) | 563 |
| BsnI | GGCC | 3 cut(s) | 51, 372, 595 |
| BsoBI | CYCGRG | 1 cut(s) | 562 |
| Bsp1286I | GDGCHC | 2 cut(s) | 366, 422 |
| BspACI | CCGC | 1 cut(s) | 425 |
| BspANI | GGCC | 3 cut(s) | 51, 372, 595 |
| BspCNI | CTCAG | 3 cut(s) | 79, 271, 642 |
| BspMI | ACCTGC | 1 cut(s) | 708 |
| BspTI | CTTAAG | 1 cut(s) | 209 |
| BsrI | ACTGG | 3 cut(s) | 357, 596, 715 |
| BssECI | CCNNGG | 5 cut(s) | 262, 373, 562, 596, 654 |
| BssT1I | CCWWGG | 1 cut(s) | 654 |
| Bst2UI | CCWGG | 1 cut(s) | 597 |
| Bst4CI | ACNGT | 1 cut(s) | 33 |
| BstAFI | CTTAAG | 1 cut(s) | 209 |
| BstC8I | GCNNGC | 1 cut(s) | 515 |
| BstDEI | CTNAG | 3 cut(s) | 87, 279, 629 |
| BstEII | GGTNACC | 1 cut(s) | 641 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 243, 433 |
| BstNI | CCWGG | 1 cut(s) | 597 |
| BstNSI | RCATGY | 1 cut(s) | 571 |
| BstPI | GGTNACC | 1 cut(s) | 641 |
| BstSCI | CCNGG | 3 cut(s) | 561, 562, 595 |
| BstSLI | GKGCMC | 2 cut(s) | 366, 422 |
| BstV1I | GCAGC | 2 cut(s) | 677, 741 |
| BstV2I | GAAGAC | 1 cut(s) | 125 |
| BsuI | GTATCC | 2 cut(s) | 263, 328 |
| BsuRI | GGCC | 3 cut(s) | 51, 372, 595 |
| BtsIMutI | CAGTG | 2 cut(s) | 38, 171 |
| BveI | ACCTGC | 1 cut(s) | 708 |
| Cac8I | GCNNGC | 1 cut(s) | 515 |
| Cfr9I | CCCGGG | 1 cut(s) | 562 |
| CviAII | CATG | 3 cut(s) | 228, 498, 568 |
| DdeI | CTNAG | 3 cut(s) | 87, 279, 629 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 639 |
| DriI | GACNNNNNGTC | 1 cut(s) | 715 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 639 |
| EaeI | YGGCCR | 2 cut(s) | 49, 593 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 715 |
| Eco130I | CCWWGG | 1 cut(s) | 654 |
| Eco88I | CYCGRG | 1 cut(s) | 562 |
| Eco91I | GGTNACC | 1 cut(s) | 641 |
| EcoO65I | GGTNACC | 1 cut(s) | 641 |
| EcoRII | CCWGG | 1 cut(s) | 595 |
| EcoT14I | CCWWGG | 1 cut(s) | 654 |
| ErhI | CCWWGG | 1 cut(s) | 654 |
| FaeI | CATG | 3 cut(s) | 231, 501, 571 |
| FatI | CATG | 3 cut(s) | 227, 497, 567 |
| Fnu4HI | GCNGC | 2 cut(s) | 691, 730 |
| Fsp4HI | GCNGC | 2 cut(s) | 691, 730 |
| FspBI | CTAG | 1 cut(s) | 192 |
| GluI | GCNGC | 2 cut(s) | 691, 730 |
| GsuI | CTGGAG | 2 cut(s) | 374, 698 |
| HaeIII | GGCC | 3 cut(s) | 51, 372, 595 |
| HapII | CCGG | 1 cut(s) | 563 |
| Hin1II | CATG | 3 cut(s) | 231, 501, 571 |
| HindIII | AAGCTT | 1 cut(s) | 661 |
| HinfI | GANTC | 2 cut(s) | 148, 506 |
| HpaII | CCGG | 1 cut(s) | 563 |
| HphI | GGTGA | 1 cut(s) | 635 |
| Hpy166II | GTNNAC | 2 cut(s) | 350, 420 |
| Hpy188I | TCNGA | 4 cut(s) | 88, 632, 679, 721 |
| Hpy188III | TCNNGA | 2 cut(s) | 27, 575 |
| Hpy8I | GTNNAC | 2 cut(s) | 350, 420 |
| HpyAV | CCTTC | 2 cut(s) | 31, 305 |
| HpyCH4III | ACNGT | 1 cut(s) | 33 |
| HpyCH4V | TGCA | 7 cut(s) | 200, 309, 420, 481, 616, 693, 729 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 243, 433 |
| HpyF3I | CTNAG | 3 cut(s) | 87, 279, 629 |
| Hsp92II | CATG | 3 cut(s) | 231, 501, 571 |
| Lsp1109I | GCAGC | 2 cut(s) | 677, 741 |
| LweI | GCATC | 1 cut(s) | 603 |
| MaeI | CTAG | 1 cut(s) | 192 |
| MaeIII | GTNAC | 2 cut(s) | 166, 641 |
| MboII | GAAGA | 3 cut(s) | 130, 457, 545 |
| MhlI | GDGCHC | 2 cut(s) | 366, 422 |
| MlsI | TGGCCA | 2 cut(s) | 51, 595 |
| MluCI | AATT | 5 cut(s) | 135, 172, 317, 405, 547 |
| MluNI | TGGCCA | 2 cut(s) | 51, 595 |
| Mox20I | TGGCCA | 2 cut(s) | 51, 595 |
| MscI | TGGCCA | 2 cut(s) | 51, 595 |
| MseI | TTAA | 2 cut(s) | 210, 326 |
| Msp20I | TGGCCA | 2 cut(s) | 51, 595 |
| MspA1I | CMGCKG | 1 cut(s) | 427 |
| MspCI | CTTAAG | 1 cut(s) | 209 |
| MspI | CCGG | 1 cut(s) | 563 |
| MspR9I | CCNGG | 3 cut(s) | 563, 564, 597 |
| MvaI | CCWGG | 1 cut(s) | 597 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 243, 433 |
| NciI | CCSGG | 2 cut(s) | 563, 564 |
| NlaIII | CATG | 3 cut(s) | 231, 501, 571 |
| NmeAIII | GCCGAG | 1 cut(s) | 287 |
| NmuCI | GTSAC | 2 cut(s) | 166, 641 |
| NspI | RCATGY | 1 cut(s) | 571 |
| PfeI | GAWTC | 2 cut(s) | 148, 506 |
| PkrI | GCNGC | 2 cut(s) | 692, 731 |
| PshBI | ATTAAT | 1 cut(s) | 326 |
| PsiI | TTATAA | 1 cut(s) | 488 |
| Psp6I | CCWGG | 1 cut(s) | 595 |
| PspEI | GGTNACC | 1 cut(s) | 641 |
| PspGI | CCWGG | 1 cut(s) | 595 |
| SaqAI | TTAA | 2 cut(s) | 210, 326 |
| SatI | GCNGC | 2 cut(s) | 691, 730 |
| ScrFI | CCNGG | 3 cut(s) | 563, 564, 597 |
| SduI | GDGCHC | 2 cut(s) | 366, 422 |
| SfaNI | GCATC | 1 cut(s) | 603 |
| SmaI | CCCGGG | 1 cut(s) | 564 |
| SmlI | CTYRAG | 1 cut(s) | 209 |
| SmoI | CTYRAG | 1 cut(s) | 209 |
| Sse9I | AATT | 5 cut(s) | 135, 172, 317, 405, 547 |
| SsiI | CCGC | 1 cut(s) | 425 |
| SspI | AATATT | 1 cut(s) | 725 |
| SspMI | CTAG | 1 cut(s) | 192 |
| StyD4I | CCNGG | 3 cut(s) | 561, 562, 595 |
| StyI | CCWWGG | 1 cut(s) | 654 |
| TaaI | ACNGT | 1 cut(s) | 33 |
| TaqI | TCGA | 1 cut(s) | 748 |
| TasI | AATT | 5 cut(s) | 135, 172, 317, 405, 547 |
| TfiI | GAWTC | 2 cut(s) | 148, 506 |
| Tru1I | TTAA | 2 cut(s) | 210, 326 |
| Tru9I | TTAA | 2 cut(s) | 210, 326 |
| TscAI | CASTG | 2 cut(s) | 38, 171 |
| TseFI | GTSAC | 2 cut(s) | 166, 641 |
| TseI | GCWGC | 2 cut(s) | 690, 729 |
| Tsp45I | GTSAC | 2 cut(s) | 166, 641 |
| TspDTI | ATGAA | 1 cut(s) | 545 |
| TspMI | CCCGGG | 1 cut(s) | 562 |
| TspRI | CASTG | 2 cut(s) | 38, 171 |
| Vha464I | CTTAAG | 1 cut(s) | 209 |
| VneI | GTGCAC | 1 cut(s) | 418 |
| VspI | ATTAAT | 1 cut(s) | 326 |
| XceI | RCATGY | 1 cut(s) | 571 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 603 |
| XmaI | CCCGGG | 1 cut(s) | 562 |
| XspI | CTAG | 1 cut(s) | 192 |