Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009673

Physical Location & Seq

Genomic Coordinates Forward (+)

51331703 .. 51333205

Gene Structure 1503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014323

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAAGCAATTTGCTGGTCATAAGAGAGTTGGTGATATTGAAGTATTAGTGGACAACATCTTGATGAACCTGCCTGTGAAGAACATATGCCAATGCCAACTGGTCTCTAAATCATGGCAAACAATGATAGCTGATTCTGAGTTCAATCACATGGTATGCCAACGTAATTGCCCGGTTAGCGTATTTGTCAAATATGTTGATTTTCCCCAGACAGTATGCATCATTCATTACTCTAGTGATACTAGTTATTCTGTGGAAGAATTTGATCTCCCAAGTGGTTTCAAGGAAATTCTGGGCTCTTGCTATGGACTGATATGTCTAGGGGATGAAGAACAGCAGAAGCTATTGTTCTTGAATCCATTTACTAGGTGGATTCAAATCATACAAGAACTGGGAGATACCTCTGGAAACTATGGATTTGGATATGACCTGACTATTGAAGATTTCAAACTAGTCAAGCTGTTGGACAATTACTCTGCTCCTTATGACACAAGAAGAGTAATGATCTATTCAATGAAAGATCATTGTTGGAGAGAGAAATCATATGAAAGTTGGCAATTTAAATTGGACCCTTTAGCTGCCAATTTCGTCGCTGATAAACTATATTGGAGAGGGTTTTTATTGAAAACTCCACAACAACAAGTAGTAGAAGAAGACGTGCTGATCACTTTCAATATCTGCAGCGAGACTTTTGGAAGAGTTCGACTACCTGAAGAACTTTGTGGGCAGTATGTAACCTTTGGAGTGATCGAGAACAAGCTATCTGCTTGCCTCTCTGCTCAAGACATCTCCATATGGTTCTTGAATGACGATCAGTTTCAAAGGTCACTTTGGCAAACTACAAAGCAAATCTTCATTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

288

Amino Acids

33.38

Weight (kDa)

4.94

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	16 - 49	4.5e-06	F-box domain
FBA_3	PF08268	84 - 273	6.4e-09	F-box associated beta propeller domain
FBA_1	PF07734	100 - 269	9.3e-13	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009673)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40430 FvH4_3g40430 FvH4_3g40431
rosa_chinensis	RchiOBHm_Chr5g0073081 RchiOBHm_Chr6g0263631 RchiOBHm_Chr6g0263701
rosa_laevigata	RLG00000014321 RLG00000014323 RLG00000014325
rosa_roxburghii	Rroxscaffold_176G00431150 Rroxscaffold_1G00008130 Rroxscaffold_7G00204030 Rroxscaffold_7G00204050 Rroxscaffold_7G00204090
rosa_samantha	Rh5AG477900 Rh5BG498500 Rh5CG521900 Rh5DG510700 Rh6BG121300 Rh6CG119700 Rh6DG107700
rosa_wichuraiana	Rw5G044380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	315
Acc36I	ACCTGC	1 cut(s)	78
AcsI	RAATTY	2 cut(s)	260, 288
AcuI	CTGAAG	1 cut(s)	732
AhlI	ACTAGT	2 cut(s)	242, 451
AjiI	CACGTC	1 cut(s)	658
AluBI	AGCT	5 cut(s)	131, 343, 460, 578, 760
AluI	AGCT	5 cut(s)	131, 343, 460, 578, 760
Alw26I	GTCTC	2 cut(s)	109, 680
ApeKI	GCWGC	2 cut(s)	578, 681
ApoI	RAATTY	2 cut(s)	260, 288
AspS9I	GGNCC	1 cut(s)	568
AsuC2I	CCSGG	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	568
BanII	GRGCYC	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	660
BbvI	GCAGC	2 cut(s)	565, 693
BclI	TGATCA	1 cut(s)	663
BcnI	CCSGG	1 cut(s)	173
BcoDI	GTCTC	2 cut(s)	109, 680
BcuI	ACTAGT	2 cut(s)	242, 451
BfaI	CTAG	5 cut(s)	234, 243, 320, 366, 452
BfmI	CTRYAG	1 cut(s)	679
BfuAI	ACCTGC	1 cut(s)	78
BisI	GCNGC	2 cut(s)	579, 682
BlsI	GCNGC	2 cut(s)	580, 683
Bme1390I	CCNGG	1 cut(s)	173
Bme18I	GGWCC	1 cut(s)	568
BmgBI	CACGTC	1 cut(s)	658
BmgT120I	GGNCC	1 cut(s)	568
BmiI	GGNNCC	1 cut(s)	570
BmrFI	CCNGG	1 cut(s)	173
BmrI	ACTGGG	1 cut(s)	401
BmsI	GCATC	1 cut(s)	228
BmuI	ACTGGG	1 cut(s)	401
BpiI	GAAGAC	1 cut(s)	660
BpuEI	CTTGAG	1 cut(s)	765
BpuMI	CCSGG	1 cut(s)	173
BsaBI	GATNNNNATC	1 cut(s)	377
BsaI	GGTCTC	1 cut(s)	109
Bse1I	ACTGG	2 cut(s)	105, 396
Bse8I	GATNNNNATC	1 cut(s)	377
BseGI	GGATG	1 cut(s)	331
BseJI	GATNNNNATC	1 cut(s)	377
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	2 cut(s)	105, 396
BseXI	GCAGC	2 cut(s)	565, 693
BsiSI	CCGG	1 cut(s)	173
BsmAI	GTCTC	2 cut(s)	109, 680
Bso31I	GGTCTC	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp143I	GATC	6 cut(s)	265, 504, 520, 663, 747, 811
BspCNI	CTCAG	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	570
BspMAI	CTGCAG	1 cut(s)	683
BspMI	ACCTGC	1 cut(s)	78
BspTNI	GGTCTC	1 cut(s)	109
BsrI	ACTGG	2 cut(s)	105, 396
BssMI	GATC	6 cut(s)	265, 504, 520, 663, 747, 811
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	2 cut(s)	490, 691
BstC8I	GCNNGC	1 cut(s)	769
BstDEI	CTNAG	1 cut(s)	138
BstF5I	GGATG	1 cut(s)	331
BstKTI	GATC	6 cut(s)	268, 507, 523, 666, 750, 814
BstMAI	GTCTC	2 cut(s)	109, 680
BstMBI	GATC	6 cut(s)	265, 504, 520, 663, 747, 811
BstMWI	GCNNNNNNNGC	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	171
BstSFI	CTRYAG	1 cut(s)	679
BstV1I	GCAGC	2 cut(s)	565, 693
BstV2I	GAAGAC	1 cut(s)	660
BtrI	CACGTC	1 cut(s)	658
BtsCI	GGATG	1 cut(s)	331
BveI	ACCTGC	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	769
Cfr13I	GGNCC	1 cut(s)	568
CviAII	CATG	2 cut(s)	114, 151
CviJI	RGCY	6 cut(s)	131, 297, 343, 460, 578, 760
CviKI_1	RGCY	6 cut(s)	131, 297, 343, 460, 578, 760
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	6 cut(s)	267, 506, 522, 665, 749, 813
DpnII	GATC	6 cut(s)	265, 504, 520, 663, 747, 811
DraI	TTTAAA	1 cut(s)	562
DrdI	GACNNNNNNGTC	1 cut(s)	315
DseDI	GACNNNNNNGTC	1 cut(s)	315
Eam1104I	CTCTTC	2 cut(s)	490, 691
EarI	CTCTTC	2 cut(s)	490, 691
Eco24I	GRGCYC	1 cut(s)	299
Eco31I	GGTCTC	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	568
Eco57I	CTGAAG	1 cut(s)	732
EcoT22I	ATGCAT	1 cut(s)	221
EcoT38I	GRGCYC	1 cut(s)	299
FaeI	CATG	2 cut(s)	117, 154
FalI	AAGNNNNNCTT	1 cut(s)	836
FatI	CATG	2 cut(s)	113, 150
FauNDI	CATATG	3 cut(s)	86, 544, 794
FbaI	TGATCA	1 cut(s)	663
Fnu4HI	GCNGC	2 cut(s)	579, 682
FokI	GGATG	1 cut(s)	338
FriOI	GRGCYC	1 cut(s)	299
Fsp4HI	GCNGC	2 cut(s)	579, 682
FspBI	CTAG	5 cut(s)	234, 243, 320, 366, 452
GluI	GCNGC	2 cut(s)	579, 682
HapII	CCGG	1 cut(s)	173
Hin1II	CATG	2 cut(s)	117, 154
HinfI	GANTC	3 cut(s)	134, 355, 373
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	6 cut(s)	61, 352, 405, 751, 782, 802
Hpy8I	GTNNAC	1 cut(s)	52
Hpy99I	CGWCG	1 cut(s)	593
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	2 cut(s)	163, 657
HpyCH4V	TGCA	2 cut(s)	219, 681
HpyF10VI	GCNNNNNNNGC	1 cut(s)	177
HpyF3I	CTNAG	1 cut(s)	138
HpySE526I	ACGT	2 cut(s)	163, 657
Hsp92II	CATG	2 cut(s)	117, 154
Ksp22I	TGATCA	1 cut(s)	663
Kzo9I	GATC	6 cut(s)	265, 504, 520, 663, 747, 811
LmnI	GCTCC	1 cut(s)	484
Lsp1109I	GCAGC	2 cut(s)	565, 693
LweI	GCATC	1 cut(s)	228
MaeI	CTAG	5 cut(s)	234, 243, 320, 366, 452
MaeII	ACGT	2 cut(s)	163, 657
MaeIII	GTNAC	2 cut(s)	733, 825
MalI	GATC	6 cut(s)	267, 506, 522, 665, 749, 813
MboI	GATC	6 cut(s)	265, 504, 520, 663, 747, 811
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	8 cut(s)	8, 166, 260, 288, 469, 557, 563, 583
MmeI	TCCRAC	2 cut(s)	444, 509
MnlI	CCTC	3 cut(s)	412, 605, 782
Mph1103I	ATGCAT	1 cut(s)	221
MseI	TTAA	1 cut(s)	561
MslI	CAYNNNNRTG	1 cut(s)	62
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	177
NciI	CCSGG	1 cut(s)	173
NdeI	CATATG	3 cut(s)	86, 544, 794
NdeII	GATC	6 cut(s)	265, 504, 520, 663, 747, 811
NlaIII	CATG	2 cut(s)	117, 154
NlaIV	GGNNCC	1 cut(s)	570
NmuCI	GTSAC	1 cut(s)	825
NsiI	ATGCAT	1 cut(s)	221
PfeI	GAWTC	3 cut(s)	134, 355, 373
PkrI	GCNGC	2 cut(s)	580, 683
PspN4I	GGNNCC	1 cut(s)	570
PspPI	GGNCC	1 cut(s)	568
PstI	CTGCAG	1 cut(s)	683
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	2 cut(s)	579, 682
Sau3AI	GATC	6 cut(s)	265, 504, 520, 663, 747, 811
Sau96I	GGNCC	1 cut(s)	568
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	1 cut(s)	299
SfaNI	GCATC	1 cut(s)	228
SfcI	CTRYAG	1 cut(s)	679
SinI	GGWCC	1 cut(s)	568
SmiI	ATTTAAAT	1 cut(s)	562
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	780
SmoI	CTYRAG	1 cut(s)	780
SpeI	ACTAGT	2 cut(s)	242, 451
Sse9I	AATT	8 cut(s)	8, 166, 260, 288, 469, 557, 563, 583
SspMI	CTAG	5 cut(s)	234, 243, 320, 366, 452
StyD4I	CCNGG	1 cut(s)	171
SwaI	ATTTAAAT	1 cut(s)	562
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	2 cut(s)	166, 660
TaqI	TCGA	2 cut(s)	703, 750
TasI	AATT	8 cut(s)	8, 166, 260, 288, 469, 557, 563, 583
TfiI	GAWTC	3 cut(s)	134, 355, 373
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TseFI	GTSAC	1 cut(s)	825
TseI	GCWGC	2 cut(s)	578, 681
Tsp45I	GTSAC	1 cut(s)	825
TspDTI	ATGAA	7 cut(s)	17, 80, 215, 342, 530, 561, 844
VpaK11BI	GGWCC	1 cut(s)	568
XapI	RAATTY	2 cut(s)	260, 288
XcmI	CCANNNNNNNNNTGG	1 cut(s)	366
XspI	CTAG	5 cut(s)	234, 243, 320, 366, 452
Zsp2I	ATGCAT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.