Rh5DG510700

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0009673
Physical Location & Seq
Reverse (-)
79773515 .. 79776268
2754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG510700.1

Sequence Viewer

Length: 1257 bp
ATGAAGAGGAAGCACTGTGAATGTTGCCATGACATATGCGATAGTGAAAGTTGTTGCACTGGCTCTAGCTCCAAGAGAAGAAAACTTGGAGACTGTAATGACCAGCCACCAAAGGCTGAACCCGGAGATAGCAACGATTGTTTAGAGAGGATTCTTGTAGAGCAGCCACTGAGGAGGTTAGCTCAATACCAGATGGTATCAAGACAGTGGAAGGCTCTCATTGGCCAACCAACATTTCAACAAATCCTTGCTGAAAAATCTGAGGCAAACAGCTTGTTTGTGAGTTATTTGAAGACTGATAAGGTAGGAATTGTAAGGCTGATTCACAACCGATATTCAGTCACCAATTACCGCCTCCCTCCATCTAGGTCTGCACTTCCCCTTAAGAATGTGTTAGGGTCATGCTACGGCTTGGTCTGCTTGGGAAATACCAGCCAAGGAGGATATAGAGCTGAGGAGGATATACTCCTTCTCAACCCCTGCACAAAAAAAGTGAGGTTAATCAAGGACACTATACATTGTGGACTGGAGAGGGGGCACTATGGCCTCGGTTTTGATAGAAAAGCACAAGATTTCAAAATTGCGAAAGTGTGCACTCCACTGGTTAGGCACTCCAAGAAGAAGCTCACTCCAAAGAGGGAAGCGGAGATGGTGCATATTATAATCTACTCATGGAAATATTCTTGCTGGCGTGAAACTTATTTTGAAGATTGGGGGTTCAATTTGGTTCATTACCCTGGCATGTTTCTTGACGGCAAAATCTACTGGCCAGGGAAGGTTTGGGAGATGCAAGGGATATTTGTCAGACCACAGGGTCACCAAAACTCCTTGGTAAGCTTTGATGTGTCATCTGAAACGCTTGGCTGCATAAACCTGCCAGAAGACCTCCATGAATATTGCAGCTTTGGAGTTGTTGCTGGAACATTGACTGCATGCGTCTGCGGAGAAAAAACTGAAGTTTGGCAATACATAGAGAATAATTTCAGAAAGAGGGCAAGTTTATCGAGTTACAGAAATCATATGTCTTCTCACCTCCAACCTCTATATCAGCTAGGGAATCTCATGGTTCTACTTCACAATGGCAGGAAAGTTACTCTATATGATATGTCTGACCACTCCAAGCTACATGCTTTGGGTCTTGACAAGTGGGTTCATCAAGGTGCTTTCATAGGAAGAGGGCCAAGAATGGAAGCAGTGCCATTGGTTGAAAGCTTGTTTTCGCCAACCTTTGAGACAGAAAAGGCAAATTGTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

418

Amino Acids

47.71

Weight (kDa)

8.73

Isoelectric Point (pI)

47.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 113 - 298 1.6e-08 F-box associated beta propeller domain
FBA_1 PF07734 135 - 352 5.1e-14 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 662
AasI GACNNNNNNGTC 1 cut(s) 813
Acc36I ACCTGC 1 cut(s) 882
AciI CCGC 3 cut(s) 352, 644, 942
AcoI YGGCCR 2 cut(s) 223, 767
AcuI CTGAAG 1 cut(s) 975
AflII CTTAAG 1 cut(s) 383
AgsI TTSAA 6 cut(s) 239, 292, 577, 707, 721, 1208
AjnI CCWGG 2 cut(s) 736, 769
AjuI GAANNNNNNNTTGG 2 cut(s) 219, 251
Alw21I GWGCWC 1 cut(s) 596
Alw26I GTCTC 2 cut(s) 84, 1226
Alw44I GTGCAC 1 cut(s) 592
AlwNI CAGNNNCTG 1 cut(s) 169
AoxI GGCC 4 cut(s) 223, 544, 767, 1178
ApaLI GTGCAC 1 cut(s) 592
ApeKI GCWGC 3 cut(s) 163, 864, 900
Asp700I GAANNNNTTC 1 cut(s) 980
AspS9I GGNCC 1 cut(s) 1178
AsuC2I CCSGG 1 cut(s) 123
AsuHPI GGTGA 3 cut(s) 334, 809, 1022
BaeGI GKGCMC 2 cut(s) 540, 596
BalI TGGCCA 2 cut(s) 225, 769
BbsI GAAGAC 3 cut(s) 299, 888, 1017
Bbv12I GWGCWC 1 cut(s) 596
BbvCI CCTCAGC 1 cut(s) 453
BbvI GCAGC 3 cut(s) 175, 851, 912
BccI CCATC 3 cut(s) 187, 370, 643
BceAI ACGGC 2 cut(s) 424, 769
BcgI CGANNNNNNTGC 2 cut(s) 984, 1018
BciT130I CCWGG 2 cut(s) 738, 771
BcnI CCSGG 1 cut(s) 123
BcoDI GTCTC 2 cut(s) 84, 1226
BfaI CTAG 3 cut(s) 66, 366, 1052
BfrI CTTAAG 1 cut(s) 383
BfuAI ACCTGC 1 cut(s) 882
BisI GCNGC 3 cut(s) 164, 865, 901
BlsI GCNGC 3 cut(s) 165, 866, 902
Bme1390I CCNGG 3 cut(s) 123, 738, 771
BmgT120I GGNCC 1 cut(s) 1178
BmrFI CCNGG 3 cut(s) 123, 738, 771
BmsI GCATC 1 cut(s) 777
BpiI GAAGAC 3 cut(s) 299, 888, 1017
BplI GAGNNNNNCTC 2 cut(s) 166, 198
BpmI CTGGAG 1 cut(s) 548
Bpu10I CCTNAGC 1 cut(s) 453
BpuMI CCSGG 1 cut(s) 123
BsaJI CCNNGG 5 cut(s) 436, 547, 736, 770, 828
BsaXI ACNNNNNCTCC 2 cut(s) 809, 839
Bse1I ACTGG 4 cut(s) 64, 531, 606, 770
BseBI CCWGG 2 cut(s) 738, 771
BseDI CCNNGG 5 cut(s) 436, 547, 736, 770, 828
BseMII CTCAG 3 cut(s) 161, 252, 444
BseNI ACTGG 4 cut(s) 64, 531, 606, 770
BseRI GAGGAG 2 cut(s) 187, 470
BseSI GKGCMC 2 cut(s) 540, 596
BseXI GCAGC 3 cut(s) 175, 851, 912
BsgI GTGCAG 2 cut(s) 357, 466
BshFI GGCC 4 cut(s) 225, 546, 769, 1180
BsiHKAI GWGCWC 1 cut(s) 596
BsiSI CCGG 1 cut(s) 123
BsmAI GTCTC 2 cut(s) 84, 1226
BsnI GGCC 4 cut(s) 225, 546, 769, 1180
Bsp1286I GDGCHC 2 cut(s) 540, 596
BspACI CCGC 3 cut(s) 352, 644, 942
BspANI GGCC 4 cut(s) 225, 546, 769, 1180
BspCNI CTCAG 3 cut(s) 162, 253, 445
BspMI ACCTGC 1 cut(s) 882
BspTI CTTAAG 1 cut(s) 383
BsrI ACTGG 4 cut(s) 64, 531, 606, 770
BssECI CCNNGG 5 cut(s) 436, 547, 736, 770, 828
BssT1I CCWWGG 2 cut(s) 436, 828
Bst2UI CCWGG 2 cut(s) 738, 771
Bst4CI ACNGT 3 cut(s) 17, 95, 207
Bst6I CTCTTC 1 cut(s) 1168
BstAFI CTTAAG 1 cut(s) 383
BstC8I GCNNGC 2 cut(s) 689, 934
BstDEI CTNAG 3 cut(s) 170, 261, 453
BstEII GGTNACC 1 cut(s) 815
BstMAI GTCTC 2 cut(s) 84, 1226
BstMWI GCNNNNNNNGC 1 cut(s) 417
BstNI CCWGG 2 cut(s) 738, 771
BstNSI RCATGY 3 cut(s) 745, 936, 1130
BstPI GGTNACC 1 cut(s) 815
BstSCI CCNGG 3 cut(s) 121, 736, 769
BstSLI GKGCMC 2 cut(s) 540, 596
BstV1I GCAGC 3 cut(s) 175, 851, 912
BstV2I GAAGAC 3 cut(s) 299, 888, 1017
BsuRI GGCC 4 cut(s) 225, 546, 769, 1180
BtsI GCAGTG 1 cut(s) 1200
BtsIMutI CAGTG 6 cut(s) 13, 57, 167, 212, 599, 1200
BveI ACCTGC 1 cut(s) 882
Cac8I GCNNGC 2 cut(s) 689, 934
CaiI CAGNNNCTG 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 1178
CseI GACGC 1 cut(s) 925
CviAII CATG 8 cut(s) 29, 402, 672, 742, 890, 933, 1063, 1127
DdeI CTNAG 3 cut(s) 170, 261, 453
DrdI GACNNNNNNGTC 1 cut(s) 813
DseDI GACNNNNNNGTC 1 cut(s) 813
EaeI YGGCCR 2 cut(s) 223, 767
Eam1104I CTCTTC 1 cut(s) 1168
EarI CTCTTC 1 cut(s) 1168
Eco130I CCWWGG 2 cut(s) 436, 828
Eco57I CTGAAG 1 cut(s) 975
Eco91I GGTNACC 1 cut(s) 815
EcoO65I GGTNACC 1 cut(s) 815
EcoRII CCWGG 2 cut(s) 736, 769
EcoT14I CCWWGG 2 cut(s) 436, 828
ErhI CCWWGG 2 cut(s) 436, 828
FaeI CATG 8 cut(s) 32, 405, 675, 745, 893, 936, 1066, 1130
FatI CATG 8 cut(s) 28, 401, 671, 741, 889, 932, 1062, 1126
FauNDI CATATG 2 cut(s) 35, 1020
Fnu4HI GCNGC 3 cut(s) 164, 865, 901
Fsp4HI GCNGC 3 cut(s) 164, 865, 901
FspBI CTAG 3 cut(s) 66, 366, 1052
GluI GCNGC 3 cut(s) 164, 865, 901
GsuI CTGGAG 1 cut(s) 548
HaeIII GGCC 4 cut(s) 225, 546, 769, 1180
HapII CCGG 1 cut(s) 123
HgaI GACGC 1 cut(s) 925
Hin1II CATG 8 cut(s) 32, 405, 675, 745, 893, 936, 1066, 1130
HindIII AAGCTT 2 cut(s) 835, 1210
HinfI GANTC 3 cut(s) 151, 322, 1057
HpaII CCGG 1 cut(s) 123
HphI GGTGA 3 cut(s) 334, 809, 1022
Hpy166II GTNNAC 2 cut(s) 524, 594
Hpy188I TCNGA 5 cut(s) 262, 806, 853, 986, 1111
Hpy188III TCNNGA 3 cut(s) 201, 749, 1139
Hpy8I GTNNAC 2 cut(s) 524, 594
HpyAV CCTTC 3 cut(s) 205, 479, 769
HpyCH4III ACNGT 3 cut(s) 17, 95, 207
HpyCH4V TGCA 9 cut(s) 57, 374, 483, 594, 655, 790, 867, 900, 932
HpyF10VI GCNNNNNNNGC 1 cut(s) 417
HpyF3I CTNAG 3 cut(s) 170, 261, 453
Hsp92II CATG 8 cut(s) 32, 405, 675, 745, 893, 936, 1066, 1130
LmnI GCTCC 1 cut(s) 74
Lsp1109I GCAGC 3 cut(s) 175, 851, 912
LweI GCATC 1 cut(s) 777
MaeI CTAG 3 cut(s) 66, 366, 1052
MaeIII GTNAC 4 cut(s) 340, 815, 1007, 1090
MboII GAAGA 8 cut(s) 16, 90, 304, 631, 719, 893, 1017, 1185
MhlI GDGCHC 2 cut(s) 540, 596
MlsI TGGCCA 2 cut(s) 225, 769
MluCI AATT 6 cut(s) 309, 346, 579, 721, 979, 1246
MluNI TGGCCA 2 cut(s) 225, 769
MmeI TCCRAC 1 cut(s) 1060
Mox20I TGGCCA 2 cut(s) 225, 769
MroXI GAANNNNTTC 1 cut(s) 980
MscI TGGCCA 2 cut(s) 225, 769
MseI TTAA 2 cut(s) 384, 500
MslI CAYNNNNRTG 1 cut(s) 1158
Msp20I TGGCCA 2 cut(s) 225, 769
MspCI CTTAAG 1 cut(s) 383
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 3 cut(s) 123, 738, 771
MvaI CCWGG 2 cut(s) 738, 771
MwoI GCNNNNNNNGC 1 cut(s) 417
NciI CCSGG 1 cut(s) 123
NdeI CATATG 2 cut(s) 35, 1020
NlaIII CATG 8 cut(s) 32, 405, 675, 745, 893, 936, 1066, 1130
NmuCI GTSAC 2 cut(s) 340, 815
NspI RCATGY 3 cut(s) 745, 936, 1130
PaeI GCATGC 1 cut(s) 936
PdmI GAANNNNTTC 1 cut(s) 980
PfeI GAWTC 3 cut(s) 151, 322, 1057
PkrI GCNGC 3 cut(s) 165, 866, 902
PsiI TTATAA 1 cut(s) 662
Psp6I CCWGG 2 cut(s) 736, 769
PspEI GGTNACC 1 cut(s) 815
PspGI CCWGG 2 cut(s) 736, 769
PspPI GGNCC 1 cut(s) 1178
PstNI CAGNNNCTG 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 1158
SaqAI TTAA 2 cut(s) 384, 500
SatI GCNGC 3 cut(s) 164, 865, 901
Sau96I GGNCC 1 cut(s) 1178
ScrFI CCNGG 3 cut(s) 123, 738, 771
SduI GDGCHC 2 cut(s) 540, 596
SfaNI GCATC 1 cut(s) 777
SmiMI CAYNNNNRTG 1 cut(s) 1158
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
SphI GCATGC 1 cut(s) 936
Sse9I AATT 6 cut(s) 309, 346, 579, 721, 979, 1246
SsiI CCGC 3 cut(s) 352, 644, 942
SspI AATATT 2 cut(s) 680, 896
SspMI CTAG 3 cut(s) 66, 366, 1052
StyD4I CCNGG 3 cut(s) 121, 736, 769
StyI CCWWGG 2 cut(s) 436, 828
TaaI ACNGT 3 cut(s) 17, 95, 207
TaqI TCGA 1 cut(s) 1004
TasI AATT 6 cut(s) 309, 346, 579, 721, 979, 1246
TfiI GAWTC 3 cut(s) 151, 322, 1057
Tru1I TTAA 2 cut(s) 384, 500
Tru9I TTAA 2 cut(s) 384, 500
TscAI CASTG 6 cut(s) 20, 64, 174, 212, 606, 1200
TseFI GTSAC 2 cut(s) 340, 815
TseI GCWGC 3 cut(s) 163, 864, 900
Tsp45I GTSAC 2 cut(s) 340, 815
TspDTI ATGAA 5 cut(s) 17, 719, 906, 1142, 1156
TspRI CASTG 6 cut(s) 20, 64, 174, 212, 606, 1200
Vha464I CTTAAG 1 cut(s) 383
VneI GTGCAC 1 cut(s) 592
XceI RCATGY 3 cut(s) 745, 936, 1130
XcmI CCANNNNNNNNNTGG 1 cut(s) 777
XmnI GAANNNNTTC 1 cut(s) 980
XspI CTAG 3 cut(s) 66, 366, 1052
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.