Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000176

Orthogroup ID

OG0009673

Physical Location & Seq

Genomic Coordinates Reverse (-)

435455 .. 438337

Gene Structure 2883 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_176G00431150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGAGAACATGAAGCAATTTGCTGGTCATAAGAGAGTTGGTGATATTGAAGTATTAGTGGACAACATCTTGATGAACCTGCCTGTGAAGAACATATGCCAATGCCAACTGGTCTCTAAATCATGGCAAACAATGATAGCTGATTCTGAGTTCAATCACATGGTATGCCAACGTAATTGCCCGGTTAGCATATTTGTCAAATATGTTGATTTTCCCCAGACAGTATGCATCATTCATTACTCTAGTGATACTAGTTATTCTGTGGAAGAATTTGATCTCCCAAGTGGTTTCAAGGAAATTCTGGGCTCTTGCTATGGACTGATATGTCTAGGGGATGAAGAACAGCAGAAGCTATTGTTCTTGAATCCATTTACTAGGTGGATTCAAATCATACAAGAACTGGGAGATACCTCTGGAAACTATGGATTTGGATATGACCTGACTATTGAAAATTTCAAACTAGTCAAGCTGTTGGACAATTACTCTGCTCCTTATGACACAAGAAGAGTAATGATCTATTCAATGAAAGATCATTGTTGGAGAGAGAAATCATATGAAAGTAGGGAATTTACATTGGACCCTTTAGCTGCCAATTTCGTCACTGATAAACTATATTGGAGAGGGTTTTTATTGAAAACTCCACAACAACAAGTAGTAGAAGAAGATGTGCTGATCACTTTCAATATCTGCAGCGAGACTTTTGGAAGAGTTCGACTACCCGAAGAACTTTGTGGGCAGTATGTAACCTTTGGAGTGATCGAGAACAAGCTATCTGCTTGCCTCTCTGCTCAAGACATCTCCATATGGTTCTTGAATGACGATCAGTTTCAAAGGAGCATCACATTGGCAAACTACAAAGCAAATCTTCATTGTTTAGTGCAGCCATTATATCTACGAGGCAATACCATCTTTCTTCTTCGAGCCAAAAGGAAGATTACAAAATACAACCTCAGTGAAGACTCTAAAGTTCAGATTTTGGGGTTTAACAAGACACCCGTTAGCCTTCAAGCTTTGGGTTTCGGTCTGATGTCGGAACCTGAACCGAGAATGGAAGCCATTGGTTTTGTTGAAAGCTTATTTCCACTAGTATGCCAAAGGAATGGAAAACATGATGATGAGCCAAGTAAAGAAATTTCAAAAAGAAGAAAACTGTGTCCCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

387

Amino Acids

44.64

Weight (kDa)

5.8

Isoelectric Point (pI)

52.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	19 - 52	6.8e-06	F-box domain
FBA_3	PF08268	87 - 275	9.7e-09	F-box associated beta propeller domain
FBA_1	PF07734	103 - 270	4.8e-13	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009673)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40430 FvH4_3g40430 FvH4_3g40431
rosa_chinensis	RchiOBHm_Chr5g0073081 RchiOBHm_Chr6g0263631 RchiOBHm_Chr6g0263701
rosa_laevigata	RLG00000014321 RLG00000014323 RLG00000014325
rosa_roxburghii	Rroxscaffold_176G00431150 Rroxscaffold_1G00008130 Rroxscaffold_7G00204030 Rroxscaffold_7G00204050 Rroxscaffold_7G00204090
rosa_samantha	Rh5AG477900 Rh5BG498500 Rh5CG521900 Rh5DG510700 Rh6BG121300 Rh6CG119700 Rh6DG107700
rosa_wichuraiana	Rw5G044380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	324
Acc36I	ACCTGC	1 cut(s)	87
AcsI	RAATTY	5 cut(s)	269, 297, 451, 566, 1131
AhlI	ACTAGT	3 cut(s)	251, 460, 1084
AluBI	AGCT	7 cut(s)	140, 352, 469, 587, 769, 1010, 1074
AluI	AGCT	7 cut(s)	140, 352, 469, 587, 769, 1010, 1074
Alw26I	GTCTC	2 cut(s)	118, 689
ApeKI	GCWGC	3 cut(s)	587, 690, 880
ApoI	RAATTY	5 cut(s)	269, 297, 451, 566, 1131
AspS9I	GGNCC	1 cut(s)	577
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	577
BanII	GRGCYC	1 cut(s)	308
BbsI	GAAGAC	1 cut(s)	963
BbvI	GCAGC	3 cut(s)	574, 702, 892
BccI	CCATC	1 cut(s)	914
BclI	TGATCA	1 cut(s)	672
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	2 cut(s)	118, 689
BcuI	ACTAGT	3 cut(s)	251, 460, 1084
BfaI	CTAG	6 cut(s)	243, 252, 329, 375, 461, 1085
BfmI	CTRYAG	1 cut(s)	688
BfuAI	ACCTGC	1 cut(s)	87
BisI	GCNGC	3 cut(s)	588, 691, 881
BlsI	GCNGC	3 cut(s)	589, 692, 882
Bme1390I	CCNGG	1 cut(s)	182
Bme18I	GGWCC	1 cut(s)	577
BmgT120I	GGNCC	1 cut(s)	577
BmiI	GGNNCC	2 cut(s)	579, 1035
BmrFI	CCNGG	1 cut(s)	182
BmrI	ACTGGG	1 cut(s)	410
BmsI	GCATC	2 cut(s)	237, 846
BmuI	ACTGGG	1 cut(s)	410
BpiI	GAAGAC	1 cut(s)	963
BpuEI	CTTGAG	1 cut(s)	774
BpuMI	CCSGG	1 cut(s)	182
BsaBI	GATNNNNATC	1 cut(s)	386
BsaI	GGTCTC	1 cut(s)	118
Bse1I	ACTGG	2 cut(s)	114, 405
Bse8I	GATNNNNATC	1 cut(s)	386
BseGI	GGATG	1 cut(s)	340
BseJI	GATNNNNATC	1 cut(s)	386
BseMII	CTCAG	2 cut(s)	138, 964
BseNI	ACTGG	2 cut(s)	114, 405
BseXI	GCAGC	3 cut(s)	574, 702, 892
BsgI	GTGCAG	1 cut(s)	899
BsiSI	CCGG	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	1140
BsmAI	GTCTC	2 cut(s)	118, 689
BsmFI	GGGAC	1 cut(s)	1140
Bso31I	GGTCTC	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	308
Bsp143I	GATC	6 cut(s)	274, 513, 529, 672, 756, 820
BspCNI	CTCAG	2 cut(s)	139, 963
BspLI	GGNNCC	2 cut(s)	579, 1035
BspMAI	CTGCAG	1 cut(s)	692
BspMI	ACCTGC	1 cut(s)	87
BspTNI	GGTCTC	1 cut(s)	118
BsrI	ACTGG	2 cut(s)	114, 405
BssMI	GATC	6 cut(s)	274, 513, 529, 672, 756, 820
Bst4CI	ACNGT	2 cut(s)	223, 1152
Bst6I	CTCTTC	2 cut(s)	499, 700
BstC8I	GCNNGC	1 cut(s)	778
BstDEI	CTNAG	2 cut(s)	147, 950
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	6 cut(s)	277, 516, 532, 675, 759, 823
BstMAI	GTCTC	2 cut(s)	118, 689
BstMBI	GATC	6 cut(s)	274, 513, 529, 672, 756, 820
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	180
BstSFI	CTRYAG	1 cut(s)	688
BstV1I	GCAGC	3 cut(s)	574, 702, 892
BstV2I	GAAGAC	1 cut(s)	963
BstXI	CCANNNNNNTGG	1 cut(s)	1100
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	2 cut(s)	600, 958
BveI	ACCTGC	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	778
Cfr13I	GGNCC	1 cut(s)	577
CviAII	CATG	4 cut(s)	10, 123, 160, 1109
DdeI	CTNAG	2 cut(s)	147, 950
DpnI	GATC	6 cut(s)	276, 515, 531, 674, 758, 822
DpnII	GATC	6 cut(s)	274, 513, 529, 672, 756, 820
DrdI	GACNNNNNNGTC	1 cut(s)	324
DseDI	GACNNNNNNGTC	1 cut(s)	324
Eam1104I	CTCTTC	2 cut(s)	499, 700
EarI	CTCTTC	2 cut(s)	499, 700
Eco24I	GRGCYC	1 cut(s)	308
Eco31I	GGTCTC	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	577
EcoT22I	ATGCAT	1 cut(s)	230
EcoT38I	GRGCYC	1 cut(s)	308
FaeI	CATG	4 cut(s)	13, 126, 163, 1112
FalI	AAGNNNNNCTT	2 cut(s)	849, 881
FaqI	GGGAC	1 cut(s)	1140
FatI	CATG	4 cut(s)	9, 122, 159, 1108
FauNDI	CATATG	3 cut(s)	95, 553, 803
FbaI	TGATCA	1 cut(s)	672
Fnu4HI	GCNGC	3 cut(s)	588, 691, 881
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	1 cut(s)	308
Fsp4HI	GCNGC	3 cut(s)	588, 691, 881
FspBI	CTAG	6 cut(s)	243, 252, 329, 375, 461, 1085
GluI	GCNGC	3 cut(s)	588, 691, 881
HapII	CCGG	1 cut(s)	182
Hin1II	CATG	4 cut(s)	13, 126, 163, 1112
HindIII	AAGCTT	2 cut(s)	1008, 1072
HinfI	GANTC	4 cut(s)	143, 364, 382, 959
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	4 cut(s)	148, 972, 1026, 1033
Hpy188III	TCNNGA	6 cut(s)	70, 361, 414, 760, 791, 811
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	1 cut(s)	1013
HpyCH4III	ACNGT	2 cut(s)	223, 1152
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	3 cut(s)	228, 690, 880
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
HpyF3I	CTNAG	2 cut(s)	147, 950
HpySE526I	ACGT	1 cut(s)	172
Hsp92II	CATG	4 cut(s)	13, 126, 163, 1112
Ksp22I	TGATCA	1 cut(s)	672
Kzo9I	GATC	6 cut(s)	274, 513, 529, 672, 756, 820
LmnI	GCTCC	2 cut(s)	493, 834
Lsp1109I	GCAGC	3 cut(s)	574, 702, 892
LweI	GCATC	2 cut(s)	237, 846
MaeI	CTAG	6 cut(s)	243, 252, 329, 375, 461, 1085
MaeII	ACGT	1 cut(s)	172
MaeIII	GTNAC	2 cut(s)	598, 742
MalI	GATC	6 cut(s)	276, 515, 531, 674, 758, 822
MboI	GATC	6 cut(s)	274, 513, 529, 672, 756, 820
MhlI	GDGCHC	1 cut(s)	308
MluCI	AATT	9 cut(s)	17, 175, 269, 297, 451, 478, 566, 592, 1131
MlyI	GAGTC	1 cut(s)	953
MmeI	TCCRAC	3 cut(s)	453, 518, 1011
MnlI	CCTC	5 cut(s)	421, 614, 791, 890, 959
Mph1103I	ATGCAT	1 cut(s)	230
MseI	TTAA	1 cut(s)	984
MslI	CAYNNNNRTG	3 cut(s)	71, 1087, 1113
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	1 cut(s)	186
NciI	CCSGG	1 cut(s)	182
NdeI	CATATG	3 cut(s)	95, 553, 803
NdeII	GATC	6 cut(s)	274, 513, 529, 672, 756, 820
NlaIII	CATG	4 cut(s)	13, 126, 163, 1112
NlaIV	GGNNCC	2 cut(s)	579, 1035
NmuCI	GTSAC	1 cut(s)	598
NsiI	ATGCAT	1 cut(s)	230
PfeI	GAWTC	3 cut(s)	143, 364, 382
PkrI	GCNGC	3 cut(s)	589, 692, 882
PleI	GAGTC	1 cut(s)	953
PpsI	GAGTC	1 cut(s)	953
PspN4I	GGNNCC	2 cut(s)	579, 1035
PspPI	GGNCC	1 cut(s)	577
PstI	CTGCAG	1 cut(s)	692
RseI	CAYNNNNRTG	3 cut(s)	71, 1087, 1113
SaqAI	TTAA	1 cut(s)	984
SatI	GCNGC	3 cut(s)	588, 691, 881
Sau3AI	GATC	6 cut(s)	274, 513, 529, 672, 756, 820
Sau96I	GGNCC	1 cut(s)	577
SchI	GAGTC	1 cut(s)	953
ScrFI	CCNGG	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	308
SfaNI	GCATC	2 cut(s)	237, 846
SfcI	CTRYAG	1 cut(s)	688
SinI	GGWCC	1 cut(s)	577
SmiMI	CAYNNNNRTG	3 cut(s)	71, 1087, 1113
SmlI	CTYRAG	1 cut(s)	789
SmoI	CTYRAG	1 cut(s)	789
SpeI	ACTAGT	3 cut(s)	251, 460, 1084
Sse9I	AATT	9 cut(s)	17, 175, 269, 297, 451, 478, 566, 592, 1131
SspMI	CTAG	6 cut(s)	243, 252, 329, 375, 461, 1085
StyD4I	CCNGG	1 cut(s)	180
TaaI	ACNGT	2 cut(s)	223, 1152
TaiI	ACGT	1 cut(s)	175
TaqI	TCGA	3 cut(s)	712, 759, 919
TaqII	GACCGA	1 cut(s)	1010
TasI	AATT	9 cut(s)	17, 175, 269, 297, 451, 478, 566, 592, 1131
TfiI	GAWTC	3 cut(s)	143, 364, 382
Tru1I	TTAA	1 cut(s)	984
Tru9I	TTAA	1 cut(s)	984
TscAI	CASTG	2 cut(s)	607, 958
TseFI	GTSAC	1 cut(s)	598
TseI	GCWGC	3 cut(s)	587, 690, 880
Tsp45I	GTSAC	1 cut(s)	598
TspDTI	ATGAA	7 cut(s)	26, 89, 224, 351, 539, 570, 857
TspRI	CASTG	2 cut(s)	607, 958
VpaK11BI	GGWCC	1 cut(s)	577
XapI	RAATTY	5 cut(s)	269, 297, 451, 566, 1131
XcmI	CCANNNNNNNNNTGG	1 cut(s)	375
XspI	CTAG	6 cut(s)	243, 252, 329, 375, 461, 1085
Zsp2I	ATGCAT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.