Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0009673

Physical Location & Seq

Genomic Coordinates Forward (+)

10256013 .. 10258810

Gene Structure 2798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00008130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGAAGAGGAAGCACTGTGAATGTTGCCATGACATATGCGATAGTGAAAGTTGTTGCACTGGCTCTAGCTCCAAGAGAAGACTGGAAAGAAAACTTGGAGACTGTAATGACCTGCCACCAAAGGCTGAACTCGGAGATAGCAACGATTGTTTAAAGAGGATTCTTGTAGAGCAGCCACTGAGGATGTTAGCTCAATACCAGATGGTATCAAGACAGTGGAAGGCTCTCATTGGCCAACCAACATTTCAACAAATCCTTGCTGAAAAATCTGAGGCAAACAGCTTGTTTGTGAGTTATTTGAAGACTGATAAAGTAGGAATTGTAAGGCTGATCGGTCACAACCGATATTCAGTGACCAATTACATCCTCCCTCCATCTAGGTCTGCACTTCCTCTTAAGAATGTGTTAGGGTCATGCTACGGCTTGGTTTTCTTGGGAAATACCAGCCCAGGAGGATACAGAGCTGAGGAGGATATACTCCTTCTCAACCCCTGCACAACAAAATTGAGATTAATCAAGGATACAATACATTGTGGACTGGAGAGGGGGCACTATGGCCTCGGTTTTGATAGAAAAGCACAAGATTTCAAAATTGTGAAAGTGTGCAGTCCGCTGGTTAGGCACTCCAAGAAGAAGCTCACTCCAAAGAGGGAAGAGGAGATGGTTCATATTATAATCTACTCATGGAAATATTCTTGCTGGCGTGAAACTTATTTTGAAGATTGGGGGTTCGATTTGGTTCATTACCGTGGCATGTTTCTTGACGGCAAAATCTACTGGCCAGGGAAGGTTTGGGAGATGCAAGGGATATTTGTCAGACCACAGGGTCACCAAAACTCCTTGGTAAGCTTTGATGTGTCATCTGAAACACTTGGCTGCATAAACCTGCCAGAAGACCTCCAGTCTGAATATTGCAGCTTTGGAGTTGTTGCTGGAACACTGACTGCATGCGTCTGCGGAGAAAAAACTGAAGTTTGGCAATACATAGATAATAATTTCAGAAAGAGGGCAAGTTTATCGAGTTACAGAAATCATATGTCTTCTCACCTCCAGCCTCTATATCAGCTAGGGAATCTCATGGTTCTACTTCACAATGGCAGGAAAGTTACTCTATATGATATGTCTGACCACTCCAAGCTACATGCTTTGGGTCTTGACAAGTGGGCTCATCAAGGTGCTTTCAATGGAAGAGGGCCAAGAATGGAAGCAGTGCCATTGGTTGAAAGCTTGTTTTCGCCAACCTTTGAGACAGAAAAGGCAAATTGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

423

Amino Acids

48.27

Weight (kDa)

8.61

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	138 - 302	3.7e-07	F-box associated beta propeller domain
FBA_1	PF07734	139 - 365	1e-14	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009673)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40430 FvH4_3g40430 FvH4_3g40431
rosa_chinensis	RchiOBHm_Chr5g0073081 RchiOBHm_Chr6g0263631 RchiOBHm_Chr6g0263701
rosa_laevigata	RLG00000014321 RLG00000014323 RLG00000014325
rosa_roxburghii	Rroxscaffold_176G00431150 Rroxscaffold_1G00008130 Rroxscaffold_7G00204030 Rroxscaffold_7G00204050 Rroxscaffold_7G00204090
rosa_samantha	Rh5AG477900 Rh5BG498500 Rh5CG521900 Rh5DG510700 Rh6BG121300 Rh6CG119700 Rh6DG107700
rosa_wichuraiana	Rw5G044380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	674
AasI	GACNNNNNNGTC	1 cut(s)	825
Acc36I	ACCTGC	2 cut(s)	120, 894
AciI	CCGC	2 cut(s)	611, 957
AcoI	YGGCCR	2 cut(s)	232, 779
AcuI	CTGAAG	1 cut(s)	990
AflII	CTTAAG	1 cut(s)	395
AgsI	TTSAA	6 cut(s)	248, 301, 589, 719, 1183, 1223
AhdI	GACNNNNNGTC	1 cut(s)	901
AjnI	CCWGG	2 cut(s)	448, 781
AjuI	GAANNNNNNNTTGG	4 cut(s)	78, 110, 228, 260
Alw26I	GTCTC	2 cut(s)	93, 1241
AlwNI	CAGNNNCTG	1 cut(s)	178
AoxI	GGCC	4 cut(s)	232, 556, 779, 1193
ApeKI	GCWGC	3 cut(s)	172, 876, 915
AseI	ATTAAT	1 cut(s)	512
AspS9I	GGNCC	1 cut(s)	1193
AsuHPI	GGTGA	2 cut(s)	821, 1037
BaeGI	GKGCMC	1 cut(s)	552
BalI	TGGCCA	2 cut(s)	234, 781
BanII	GRGCYC	1 cut(s)	1168
BbsI	GAAGAC	4 cut(s)	85, 308, 900, 1032
BbvCI	CCTCAGC	1 cut(s)	465
BbvI	GCAGC	3 cut(s)	184, 863, 927
BccI	CCATC	3 cut(s)	196, 382, 655
BceAI	ACGGC	2 cut(s)	436, 781
BcgI	CGANNNNNNTGC	2 cut(s)	999, 1033
BciT130I	CCWGG	2 cut(s)	450, 783
BciVI	GTATCC	2 cut(s)	449, 514
BcoDI	GTCTC	2 cut(s)	93, 1241
BfaI	CTAG	3 cut(s)	66, 378, 1067
BfrI	CTTAAG	1 cut(s)	395
BfuAI	ACCTGC	2 cut(s)	120, 894
BfuI	GTATCC	2 cut(s)	449, 514
BisI	GCNGC	3 cut(s)	173, 877, 916
BlsI	GCNGC	3 cut(s)	174, 878, 917
Bme1390I	CCNGG	2 cut(s)	450, 783
BmeRI	GACNNNNNGTC	1 cut(s)	901
BmgT120I	GGNCC	1 cut(s)	1193
BmrFI	CCNGG	2 cut(s)	450, 783
BmsI	GCATC	1 cut(s)	789
BpiI	GAAGAC	4 cut(s)	85, 308, 900, 1032
BpmI	CTGGAG	3 cut(s)	560, 884, 1034
Bpu10I	CCTNAGC	1 cut(s)	465
BsaJI	CCNNGG	5 cut(s)	448, 559, 748, 782, 840
BsaXI	ACNNNNNCTCC	2 cut(s)	821, 851
Bse1I	ACTGG	5 cut(s)	64, 87, 543, 782, 901
BseBI	CCWGG	2 cut(s)	450, 783
BseDI	CCNNGG	5 cut(s)	448, 559, 748, 782, 840
BseGI	GGATG	2 cut(s)	189, 363
BseMII	CTCAG	3 cut(s)	170, 261, 456
BseNI	ACTGG	5 cut(s)	64, 87, 543, 782, 901
BseRI	GAGGAG	2 cut(s)	482, 671
BseSI	GKGCMC	1 cut(s)	552
BseXI	GCAGC	3 cut(s)	184, 863, 927
BsgI	GTGCAG	3 cut(s)	369, 478, 625
BshFI	GGCC	4 cut(s)	234, 558, 781, 1195
BsmAI	GTCTC	2 cut(s)	93, 1241
BsnI	GGCC	4 cut(s)	234, 558, 781, 1195
Bsp1286I	GDGCHC	2 cut(s)	552, 1168
Bsp143I	GATC	1 cut(s)	330
BspACI	CCGC	2 cut(s)	611, 957
BspANI	GGCC	4 cut(s)	234, 558, 781, 1195
BspCNI	CTCAG	3 cut(s)	171, 262, 457
BspMI	ACCTGC	2 cut(s)	120, 894
BspTI	CTTAAG	1 cut(s)	395
BsrI	ACTGG	5 cut(s)	64, 87, 543, 782, 901
BssECI	CCNNGG	5 cut(s)	448, 559, 748, 782, 840
BssMI	GATC	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	840
Bst2UI	CCWGG	2 cut(s)	450, 783
Bst4CI	ACNGT	4 cut(s)	17, 104, 216, 749
Bst6I	CTCTTC	2 cut(s)	648, 1183
BstAFI	CTTAAG	1 cut(s)	395
BstC8I	GCNNGC	2 cut(s)	701, 949
BstDEI	CTNAG	3 cut(s)	179, 270, 465
BstDSI	CCRYGG	1 cut(s)	748
BstEII	GGTNACC	1 cut(s)	827
BstF5I	GGATG	2 cut(s)	189, 363
BstKTI	GATC	1 cut(s)	333
BstMAI	GTCTC	2 cut(s)	93, 1241
BstMBI	GATC	1 cut(s)	330
BstMWI	GCNNNNNNNGC	1 cut(s)	619
BstNI	CCWGG	2 cut(s)	450, 783
BstNSI	RCATGY	3 cut(s)	757, 951, 1145
BstPI	GGTNACC	1 cut(s)	827
BstSCI	CCNGG	2 cut(s)	448, 781
BstSLI	GKGCMC	1 cut(s)	552
BstV1I	GCAGC	3 cut(s)	184, 863, 927
BstV2I	GAAGAC	4 cut(s)	85, 308, 900, 1032
BsuI	GTATCC	2 cut(s)	449, 514
BsuRI	GGCC	4 cut(s)	234, 558, 781, 1195
BtgI	CCRYGG	1 cut(s)	748
BtsCI	GGATG	2 cut(s)	189, 363
BtsI	GCAGTG	1 cut(s)	1215
BtsIMutI	CAGTG	7 cut(s)	13, 57, 176, 221, 357, 938, 1215
BveI	ACCTGC	2 cut(s)	120, 894
Cac8I	GCNNGC	2 cut(s)	701, 949
CaiI	CAGNNNCTG	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	1193
CseI	GACGC	1 cut(s)	940
CviAII	CATG	7 cut(s)	29, 414, 684, 754, 948, 1078, 1142
DdeI	CTNAG	3 cut(s)	179, 270, 465
DpnI	GATC	1 cut(s)	332
DpnII	GATC	1 cut(s)	330
DraI	TTTAAA	1 cut(s)	153
DrdI	GACNNNNNNGTC	1 cut(s)	825
DriI	GACNNNNNGTC	1 cut(s)	901
DseDI	GACNNNNNNGTC	1 cut(s)	825
EaeI	YGGCCR	2 cut(s)	232, 779
Eam1104I	CTCTTC	2 cut(s)	648, 1183
Eam1105I	GACNNNNNGTC	1 cut(s)	901
EarI	CTCTTC	2 cut(s)	648, 1183
Eco130I	CCWWGG	1 cut(s)	840
Eco24I	GRGCYC	1 cut(s)	1168
Eco57I	CTGAAG	1 cut(s)	990
Eco91I	GGTNACC	1 cut(s)	827
EcoO65I	GGTNACC	1 cut(s)	827
EcoRII	CCWGG	2 cut(s)	448, 781
EcoT14I	CCWWGG	1 cut(s)	840
EcoT38I	GRGCYC	1 cut(s)	1168
ErhI	CCWWGG	1 cut(s)	840
FaeI	CATG	7 cut(s)	32, 417, 687, 757, 951, 1081, 1145
FatI	CATG	7 cut(s)	28, 413, 683, 753, 947, 1077, 1141
FauNDI	CATATG	2 cut(s)	35, 1035
Fnu4HI	GCNGC	3 cut(s)	173, 877, 916
FokI	GGATG	2 cut(s)	196, 350
FriOI	GRGCYC	1 cut(s)	1168
Fsp4HI	GCNGC	3 cut(s)	173, 877, 916
FspBI	CTAG	3 cut(s)	66, 378, 1067
GluI	GCNGC	3 cut(s)	173, 877, 916
GsuI	CTGGAG	3 cut(s)	560, 884, 1034
HaeIII	GGCC	4 cut(s)	234, 558, 781, 1195
HgaI	GACGC	1 cut(s)	940
Hin1II	CATG	7 cut(s)	32, 417, 687, 757, 951, 1081, 1145
HindIII	AAGCTT	2 cut(s)	847, 1225
HinfI	GANTC	2 cut(s)	160, 1072
HphI	GGTGA	2 cut(s)	821, 1037
Hpy166II	GTNNAC	1 cut(s)	536
Hpy188I	TCNGA	7 cut(s)	134, 271, 818, 865, 907, 1001, 1126
Hpy188III	TCNNGA	3 cut(s)	210, 761, 1154
Hpy8I	GTNNAC	1 cut(s)	536
HpyAV	CCTTC	3 cut(s)	214, 491, 781
HpyCH4III	ACNGT	4 cut(s)	17, 104, 216, 749
HpyCH4V	TGCA	8 cut(s)	57, 386, 495, 606, 802, 879, 915, 947
HpyF10VI	GCNNNNNNNGC	1 cut(s)	619
HpyF3I	CTNAG	3 cut(s)	179, 270, 465
Hsp92II	CATG	7 cut(s)	32, 417, 687, 757, 951, 1081, 1145
Kzo9I	GATC	1 cut(s)	330
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	3 cut(s)	184, 863, 927
LweI	GCATC	1 cut(s)	789
MaeI	CTAG	3 cut(s)	66, 378, 1067
MaeIII	GTNAC	5 cut(s)	335, 352, 827, 1022, 1105
MalI	GATC	1 cut(s)	332
MboI	GATC	1 cut(s)	330
MboII	GAAGA	9 cut(s)	16, 90, 313, 643, 665, 731, 905, 1032, 1200
MhlI	GDGCHC	2 cut(s)	552, 1168
MlsI	TGGCCA	2 cut(s)	234, 781
MluCI	AATT	6 cut(s)	318, 358, 503, 591, 994, 1261
MluNI	TGGCCA	2 cut(s)	234, 781
Mox20I	TGGCCA	2 cut(s)	234, 781
MscI	TGGCCA	2 cut(s)	234, 781
MseI	TTAA	3 cut(s)	152, 396, 512
MslI	CAYNNNNRTG	2 cut(s)	747, 1173
Msp20I	TGGCCA	2 cut(s)	234, 781
MspA1I	CMGCKG	1 cut(s)	613
MspCI	CTTAAG	1 cut(s)	395
MspR9I	CCNGG	2 cut(s)	450, 783
MvaI	CCWGG	2 cut(s)	450, 783
MwoI	GCNNNNNNNGC	1 cut(s)	619
NdeI	CATATG	2 cut(s)	35, 1035
NdeII	GATC	1 cut(s)	330
NlaIII	CATG	7 cut(s)	32, 417, 687, 757, 951, 1081, 1145
NmuCI	GTSAC	3 cut(s)	335, 352, 827
NspI	RCATGY	3 cut(s)	757, 951, 1145
PaeI	GCATGC	1 cut(s)	951
PfeI	GAWTC	2 cut(s)	160, 1072
PkrI	GCNGC	3 cut(s)	174, 878, 917
PshBI	ATTAAT	1 cut(s)	512
PsiI	TTATAA	1 cut(s)	674
Psp6I	CCWGG	2 cut(s)	448, 781
PspEI	GGTNACC	1 cut(s)	827
PspGI	CCWGG	2 cut(s)	448, 781
PspPI	GGNCC	1 cut(s)	1193
PstNI	CAGNNNCTG	1 cut(s)	178
RseI	CAYNNNNRTG	2 cut(s)	747, 1173
SaqAI	TTAA	3 cut(s)	152, 396, 512
SatI	GCNGC	3 cut(s)	173, 877, 916
Sau3AI	GATC	1 cut(s)	330
Sau96I	GGNCC	1 cut(s)	1193
ScrFI	CCNGG	2 cut(s)	450, 783
SduI	GDGCHC	2 cut(s)	552, 1168
SfaNI	GCATC	1 cut(s)	789
SmiMI	CAYNNNNRTG	2 cut(s)	747, 1173
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
SphI	GCATGC	1 cut(s)	951
Sse9I	AATT	6 cut(s)	318, 358, 503, 591, 994, 1261
SsiI	CCGC	2 cut(s)	611, 957
SspI	AATATT	2 cut(s)	692, 911
SspMI	CTAG	3 cut(s)	66, 378, 1067
StyD4I	CCNGG	2 cut(s)	448, 781
StyI	CCWWGG	1 cut(s)	840
TaaI	ACNGT	4 cut(s)	17, 104, 216, 749
TaqI	TCGA	2 cut(s)	732, 1019
TaqII	GACCGA	1 cut(s)	323
TasI	AATT	6 cut(s)	318, 358, 503, 591, 994, 1261
TfiI	GAWTC	2 cut(s)	160, 1072
Tru1I	TTAA	3 cut(s)	152, 396, 512
Tru9I	TTAA	3 cut(s)	152, 396, 512
TscAI	CASTG	7 cut(s)	20, 64, 183, 221, 357, 945, 1215
TseFI	GTSAC	3 cut(s)	335, 352, 827
TseI	GCWGC	3 cut(s)	172, 876, 915
Tsp45I	GTSAC	3 cut(s)	335, 352, 827
TspDTI	ATGAA	3 cut(s)	17, 656, 731
TspRI	CASTG	7 cut(s)	20, 64, 183, 221, 357, 945, 1215
Vha464I	CTTAAG	1 cut(s)	395
VspI	ATTAAT	1 cut(s)	512
XceI	RCATGY	3 cut(s)	757, 951, 1145
XcmI	CCANNNNNNNNNTGG	2 cut(s)	79, 789
XspI	CTAG	3 cut(s)	66, 378, 1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.