Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012601

Physical Location & Seq

Genomic Coordinates Reverse (-)

35056872 .. 35059356

Gene Structure 2485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g41860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGTCGGAGATGAAGAAGAATGTTGTGTATGATCTCCCTGAAGATATTATTTTCAAGATTCTATGTAGGTTGCCAGTCAAAAGTTTGATTCGATTCACTTGTGTTTCAAAACGATGGCGTTCTGTAATAATCTCTGACCCTCAGTTTGCTAAATTCCAACACAAGCTAGCATCTCAGCGCAAAACCCTCTGTCATAGATTTTTAGTCAGCACCCTCTTTCGACTTGAACCCTTTATCGAGTGTTGCCATATCGAGTGTCAATGCGACTTCTCAGATTCTTCAGAGAAAAAAGCAGCATTATCCGAACTCCACACTCAGTTTCGAACCATAGATTTGGAAGCGCCCACTCAATTTGGAGATGCTTCTTCGGTTAAGATTCTTACCTCTCCATTTGAGGGGCATGTCAAGCCAATGGTTACTTGTAATGGTTTGGTAATTCTAGGTGATGACCATTGTACAAACTTGTCTATCTGGAACCCTTCGACTGCATTCTTCCGCAAAATACCTGATCCAGGTATTTGGGCAGAAGTCGCAACCGGGCATGGATACGGAAGATATGATATATATGCACTTTGGGGTTTTGGGTATGTGTCAGCAACTGATGACTACAGCCTTGTTATTCTATTACATCATTCAGATGATGATGATGATGATGATGATGATGATGATGATGATGGTGGTGATGATGATGATGATGATTTACCTTTTGTATTGGACGTACACATTTTCTCGGTGAGAGATAACTCATGGAAAATTATTCAAGTCCCTGGTAATATCGTTGACTGGATCTTCAGTAGGAAGGGGGTTCTTGCAAATGAAGTAATCCATTGGATCACGGTGAAAAATCAAGAAACTGGTGAGCTAGTTATCTCTGCTTTTGATTTGACTGAGGAGGAGTTCCAGAAAGAACCGTTGCTATTCCCTGAGGATGTAGACTACAACATTGATGACTTCAGGACAGAGATAGAACTGGGGTGTATAGATGGATGCCTTCGGTTTTACTCTATGAATACTGGCAGGGATATTGAAGTCTGGGTGATGAGAGAATACAGGGTACGTAAATCTTGGATCAAACTCTTTAAATTTAGTCTAGATGATATTCCAAATGTCTTTGGTACAGAAGTTTTTATGTCACAATTTTACGTTCTGGAAAGTGGTAGTGCTTTCATCAATTCAGACCTAAAGGAGTTCATCAGAATTGAATGCCATAAAGAAGATAAGCCGGTTCTGAGCGGCCGATATAGGATGGAGAAGTGGGAGCCGATGAATTTAGGTTTATGGGATAAACTTGAAAGTTTACGGAAGGATGGGCAGGATGCAAATTTTTTGAAAGTGATGTTTTACGATGAAACTTTAGTTTCAGTGCCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1

Protein Analysis

458

Amino Acids

52.89

Weight (kDa)

4.69

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	11 - 46	2.9e-11	F-box domain
F-box-like	PF12937	11 - 46	3.4e-08	F-box-like
FBA_3	PF08268	125 - 359	8e-06	F-box associated beta propeller domain
FBA_1	PF07734	132 - 398	1.3e-19	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41860 FvH4_5g17340
rosa_chinensis	RchiOBHm_Chr4g0389261 RchiOBHm_Chr5g0075701
rosa_multiflora	Rmu_sc0002398.1_g000004 Rmu_sc0003175.1_g000007 Rmu_sc0007018.1_g000001 Rmu_sc0012670.1_g000004
rosa_roxburghii	Rroxscaffold_2G00133960
rosa_rugosa	Rorug03G0366900.1 Rorug04G0064600 Rorug05G0442200
rosa_samantha	Rh5AG498600 Rh5AG498700 Rh5AG501200 Rh5BG519800 Rh5CG543800 Rh5DG529700
rosa_wichuraiana	Rw5G046280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1233
AccI	GTMKAC	1 cut(s)	933
AciI	CCGC	2 cut(s)	496, 1233
AclWI	GGATC	4 cut(s)	503, 794, 839, 1076
AcoI	YGGCCR	1 cut(s)	1234
AcsI	RAATTY	4 cut(s)	152, 1082, 1267, 1321
AcuI	CTGAAG	4 cut(s)	60, 264, 775, 937
AfaI	GTAC	4 cut(s)	457, 720, 1056, 1117
AfiI	CCNNNNNNNGG	2 cut(s)	395, 512
AgsI	TTSAA	8 cut(s)	55, 108, 227, 761, 1028, 1202, 1292, 1330
AjnI	CCWGG	2 cut(s)	511, 766
AluBI	AGCT	2 cut(s)	166, 862
AluI	AGCT	2 cut(s)	166, 862
AlwI	GGATC	4 cut(s)	503, 794, 839, 1076
AlwNI	CAGNNNCTG	2 cut(s)	599, 1367
AoxI	GGCC	1 cut(s)	1234
ApeKI	GCWGC	1 cut(s)	293
ApoI	RAATTY	4 cut(s)	152, 1082, 1267, 1321
ArsI	GACNNNNNNTTYG	2 cut(s)	128, 160
AspLEI	GCGC	2 cut(s)	180, 343
AsuC2I	CCSGG	1 cut(s)	538
AsuHPI	GGTGA	6 cut(s)	455, 692, 745, 850, 869, 1048
AsuII	TTCGAA	1 cut(s)	322
AsuNHI	GCTAGC	1 cut(s)	166
AxyI	CCTNAGG	1 cut(s)	924
BaeI	ACNNNNGTAYC	2 cut(s)	1107, 1140
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	5 cut(s)	108, 668, 977, 1240, 1301
BciT130I	CCWGG	2 cut(s)	513, 768
BciVI	GTATCC	1 cut(s)	539
BcnI	CCSGG	1 cut(s)	538
BfaI	CTAG	4 cut(s)	167, 440, 863, 1091
BfmI	CTRYAG	1 cut(s)	607
BfoI	RGCGCY	1 cut(s)	344
BfuI	GTATCC	1 cut(s)	539
BisI	GCNGC	2 cut(s)	294, 1234
BlsI	GCNGC	2 cut(s)	295, 1235
Bme1390I	CCNGG	3 cut(s)	513, 538, 768
BmiI	GGNNCC	2 cut(s)	476, 1260
BmrFI	CCNGG	3 cut(s)	513, 538, 768
BmrI	ACTGGG	1 cut(s)	980
BmsI	GCATC	4 cut(s)	179, 349, 977, 1306
BmtI	GCTAGC	1 cut(s)	170
BmuI	ACTGGG	1 cut(s)	980
Bpu14I	TTCGAA	1 cut(s)	322
BpuMI	CCSGG	1 cut(s)	538
BsaAI	YACGTR	1 cut(s)	1058
BsaJI	CCNNGG	1 cut(s)	766
Bsc4I	CCNNNNNNNGG	2 cut(s)	395, 512
Bse118I	RCCGGY	1 cut(s)	1222
Bse1I	ACTGG	5 cut(s)	74, 788, 859, 975, 1018
Bse21I	CCTNAGG	1 cut(s)	924
BseBI	CCWGG	2 cut(s)	513, 768
BseDI	CCNNGG	1 cut(s)	766
BseGI	GGATG	5 cut(s)	934, 992, 1251, 1312, 1321
BseLI	CCNNNNNNNGG	2 cut(s)	395, 512
BseMII	CTCAG	7 cut(s)	155, 188, 285, 329, 879, 915, 1220
BseNI	ACTGG	5 cut(s)	74, 788, 859, 975, 1018
BseRI	GAGGAG	2 cut(s)	905, 908
BseX3I	CGGCCG	1 cut(s)	1234
BseXI	GCAGC	1 cut(s)	305
Bsh1285I	CGRYCG	1 cut(s)	1237
BshFI	GGCC	1 cut(s)	1236
BsiEI	CGRYCG	1 cut(s)	1237
BsiSI	CCGG	2 cut(s)	537, 1223
BslFI	GGGAC	1 cut(s)	749
BslI	CCNNNNNNNGG	2 cut(s)	395, 512
BsmFI	GGGAC	1 cut(s)	749
BsmI	GAATGC	2 cut(s)	488, 1208
BsnI	GGCC	1 cut(s)	1236
Bsp119I	TTCGAA	1 cut(s)	322
Bsp1407I	TGTACA	1 cut(s)	455
Bsp143I	GATC	5 cut(s)	31, 508, 786, 831, 1068
BspACI	CCGC	2 cut(s)	496, 1233
BspANI	GGCC	1 cut(s)	1236
BspCNI	CTCAG	7 cut(s)	154, 187, 284, 328, 880, 916, 1221
BspLI	GGNNCC	2 cut(s)	476, 1260
BspOI	GCTAGC	1 cut(s)	170
BspPI	GGATC	4 cut(s)	503, 794, 839, 1076
BspT104I	TTCGAA	1 cut(s)	322
BsrBI	CCGCTC	1 cut(s)	1233
BsrFI	RCCGGY	1 cut(s)	1222
BsrGI	TGTACA	1 cut(s)	455
BsrI	ACTGG	5 cut(s)	74, 788, 859, 975, 1018
BssAI	RCCGGY	1 cut(s)	1222
BssECI	CCNNGG	1 cut(s)	766
BssMI	GATC	5 cut(s)	31, 508, 786, 831, 1068
Bst2UI	CCWGG	2 cut(s)	513, 768
Bst4CI	ACNGT	2 cut(s)	838, 912
BstAUI	TGTACA	1 cut(s)	455
BstBAI	YACGTR	1 cut(s)	1058
BstBI	TTCGAA	1 cut(s)	322
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	7 cut(s)	141, 174, 271, 315, 888, 924, 1229
BstENI	CCTNNNNNAGG	1 cut(s)	510
BstF5I	GGATG	5 cut(s)	934, 992, 1251, 1312, 1321
BstH2I	RGCGCY	1 cut(s)	344
BstHHI	GCGC	2 cut(s)	180, 343
BstKTI	GATC	5 cut(s)	34, 511, 789, 834, 1071
BstMBI	GATC	5 cut(s)	31, 508, 786, 831, 1068
BstMCI	CGRYCG	1 cut(s)	1237
BstMWI	GCNNNNNNNGC	2 cut(s)	406, 530
BstNI	CCWGG	2 cut(s)	513, 768
BstNSI	RCATGY	1 cut(s)	404
BstSCI	CCNGG	3 cut(s)	511, 536, 766
BstSFI	CTRYAG	1 cut(s)	607
BstSNI	TACGTA	1 cut(s)	1058
BstV1I	GCAGC	1 cut(s)	305
BstX2I	RGATCY	1 cut(s)	786
BstXI	CCANNNNNNTGG	2 cut(s)	334, 519
BstYI	RGATCY	1 cut(s)	786
BstZI	CGGCCG	1 cut(s)	1234
Bsu36I	CCTNAGG	1 cut(s)	924
BsuI	GTATCC	1 cut(s)	539
BsuRI	GGCC	1 cut(s)	1236
BtsCI	GGATG	5 cut(s)	934, 992, 1251, 1312, 1321
BtsIMutI	CAGTG	1 cut(s)	1368
Cac8I	GCNNGC	1 cut(s)	168
CaiI	CAGNNNCTG	2 cut(s)	599, 1367
CfoI	GCGC	2 cut(s)	180, 343
Cfr10I	RCCGGY	1 cut(s)	1222
Csp6I	GTAC	4 cut(s)	456, 719, 1055, 1116
CspCI	CAANNNNNGTGG	2 cut(s)	334, 369
CviAII	CATG	3 cut(s)	401, 542, 747
CviJI	RGCY	7 cut(s)	166, 409, 612, 862, 1222, 1236, 1261
CviKI_1	RGCY	7 cut(s)	166, 409, 612, 862, 1222, 1236, 1261
CviQI	GTAC	4 cut(s)	456, 719, 1055, 1116
DdeI	CTNAG	7 cut(s)	141, 174, 271, 315, 888, 924, 1229
DpnI	GATC	5 cut(s)	33, 510, 788, 833, 1070
DpnII	GATC	5 cut(s)	31, 508, 786, 831, 1068
DraI	TTTAAA	1 cut(s)	1081
EaeI	YGGCCR	1 cut(s)	1234
EagI	CGGCCG	1 cut(s)	1234
EclXI	CGGCCG	1 cut(s)	1234
Eco105I	TACGTA	1 cut(s)	1058
Eco52I	CGGCCG	1 cut(s)	1234
Eco57I	CTGAAG	4 cut(s)	60, 264, 775, 937
Eco81I	CCTNAGG	1 cut(s)	924
EcoNI	CCTNNNNNAGG	1 cut(s)	510
EcoRII	CCWGG	2 cut(s)	511, 766
FaeI	CATG	3 cut(s)	404, 545, 750
FaqI	GGGAC	1 cut(s)	749
FatI	CATG	3 cut(s)	400, 541, 746
FblI	GTMKAC	1 cut(s)	933
Fnu4HI	GCNGC	2 cut(s)	294, 1234
FokI	GGATG	5 cut(s)	941, 999, 1258, 1319, 1328
Fsp4HI	GCNGC	2 cut(s)	294, 1234
FspBI	CTAG	4 cut(s)	167, 440, 863, 1091
GlaI	GCGC	2 cut(s)	179, 342
GluI	GCNGC	2 cut(s)	294, 1234
HaeII	RGCGCY	1 cut(s)	344
HaeIII	GGCC	1 cut(s)	1236
HapII	CCGG	2 cut(s)	537, 1223
HhaI	GCGC	2 cut(s)	180, 343
Hin1II	CATG	3 cut(s)	404, 545, 750
Hin6I	GCGC	2 cut(s)	178, 341
HinP1I	GCGC	2 cut(s)	178, 341
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HinfI	GANTC	5 cut(s)	58, 88, 93, 275, 376
HpaII	CCGG	2 cut(s)	537, 1223
HphI	GGTGA	6 cut(s)	455, 692, 745, 850, 869, 1048
Hpy166II	GTNNAC	4 cut(s)	721, 781, 934, 1298
Hpy188I	TCNGA	9 cut(s)	7, 136, 274, 283, 304, 637, 1177, 1196, 1230
Hpy188III	TCNNGA	7 cut(s)	55, 472, 848, 901, 955, 1091, 1148
Hpy8I	GTNNAC	4 cut(s)	721, 781, 934, 1298
HpyAV	CCTTC	4 cut(s)	489, 793, 1001, 1297
HpyCH4III	ACNGT	2 cut(s)	838, 912
HpyCH4IV	ACGT	3 cut(s)	717, 1057, 1143
HpyCH4V	TGCA	4 cut(s)	488, 569, 812, 1319
HpyF10VI	GCNNNNNNNGC	2 cut(s)	406, 530
HpyF3I	CTNAG	7 cut(s)	141, 174, 271, 315, 888, 924, 1229
HpySE526I	ACGT	3 cut(s)	717, 1057, 1143
Hsp92II	CATG	3 cut(s)	404, 545, 750
HspAI	GCGC	2 cut(s)	178, 341
Kzo9I	GATC	5 cut(s)	31, 508, 786, 831, 1068
LmnI	GCTCC	1 cut(s)	1258
Lsp1109I	GCAGC	1 cut(s)	305
LweI	GCATC	4 cut(s)	179, 349, 977, 1306
MaeI	CTAG	4 cut(s)	167, 440, 863, 1091
MaeII	ACGT	3 cut(s)	717, 1057, 1143
MaeIII	GTNAC	2 cut(s)	415, 1131
MalI	GATC	5 cut(s)	33, 510, 788, 833, 1070
MbiI	CCGCTC	1 cut(s)	1233
MboI	GATC	5 cut(s)	31, 508, 786, 831, 1068
MboII	GAAGA	9 cut(s)	25, 28, 53, 270, 357, 484, 564, 781, 1226
MflI	RGATCY	1 cut(s)	786
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	8 cut(s)	150, 197, 224, 388, 394, 883, 886, 919
MseI	TTAA	2 cut(s)	372, 1080
MslI	CAYNNNNRTG	1 cut(s)	636
MspI	CCGG	2 cut(s)	537, 1223
MspR9I	CCNGG	3 cut(s)	513, 538, 768
Mva1269I	GAATGC	2 cut(s)	488, 1208
MvaI	CCWGG	2 cut(s)	513, 768
MwoI	GCNNNNNNNGC	2 cut(s)	406, 530
NciI	CCSGG	1 cut(s)	538
NdeII	GATC	5 cut(s)	31, 508, 786, 831, 1068
NheI	GCTAGC	1 cut(s)	166
NlaIII	CATG	3 cut(s)	404, 545, 750
NlaIV	GGNNCC	2 cut(s)	476, 1260
NmuCI	GTSAC	1 cut(s)	1131
NspI	RCATGY	1 cut(s)	404
NspV	TTCGAA	1 cut(s)	322
PctI	GAATGC	2 cut(s)	488, 1208
PfeI	GAWTC	5 cut(s)	58, 88, 93, 275, 376
PkrI	GCNGC	2 cut(s)	295, 1235
Ppu21I	YACGTR	1 cut(s)	1058
Psp6I	CCWGG	2 cut(s)	511, 766
PspGI	CCWGG	2 cut(s)	511, 766
PspN4I	GGNNCC	2 cut(s)	476, 1260
PstNI	CAGNNNCTG	2 cut(s)	599, 1367
PsuI	RGATCY	1 cut(s)	786
RsaI	GTAC	4 cut(s)	457, 720, 1056, 1117
RsaNI	GTAC	4 cut(s)	456, 719, 1055, 1116
RseI	CAYNNNNRTG	1 cut(s)	636
SaqAI	TTAA	2 cut(s)	372, 1080
SatI	GCNGC	2 cut(s)	294, 1234
Sau3AI	GATC	5 cut(s)	31, 508, 786, 831, 1068
ScrFI	CCNGG	3 cut(s)	513, 538, 768
SfaNI	GCATC	4 cut(s)	179, 349, 977, 1306
SfcI	CTRYAG	1 cut(s)	607
SfuI	TTCGAA	1 cut(s)	322
SmiMI	CAYNNNNRTG	1 cut(s)	636
SnaBI	TACGTA	1 cut(s)	1058
SsiI	CCGC	2 cut(s)	496, 1233
SspMI	CTAG	4 cut(s)	167, 440, 863, 1091
StyD4I	CCNGG	3 cut(s)	511, 536, 766
TaaI	ACNGT	2 cut(s)	838, 912
TaiI	ACGT	3 cut(s)	720, 1060, 1146
TaqI	TCGA	6 cut(s)	91, 220, 237, 252, 322, 482
TatI	WGTACW	1 cut(s)	455
TauI	GCSGC	1 cut(s)	1236
TfiI	GAWTC	5 cut(s)	58, 88, 93, 275, 376
Tru1I	TTAA	2 cut(s)	372, 1080
Tru9I	TTAA	2 cut(s)	372, 1080
TscAI	CASTG	1 cut(s)	1368
TseFI	GTSAC	1 cut(s)	1131
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	1131
TspDTI	ATGAA	7 cut(s)	26, 831, 1022, 1156, 1180, 1280, 1362
TspGWI	ACGGA	2 cut(s)	564, 1315
TspRI	CASTG	1 cut(s)	1368
XagI	CCTNNNNNAGG	1 cut(s)	510
XapI	RAATTY	4 cut(s)	152, 1082, 1267, 1321
XbaI	TCTAGA	1 cut(s)	1090
XceI	RCATGY	1 cut(s)	404
XmiI	GTMKAC	1 cut(s)	933
XspI	CTAG	4 cut(s)	167, 440, 863, 1091

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.