Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0012601

Physical Location & Seq

Genomic Coordinates Forward (+)

75920182 .. 75920682

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG543800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCTACTTGCAATGGTTTGGTAATTCTAAGTGATGTCCATTGTACAAACTTGTCTATCTGGAAGCCTTCAACTGCATTCTTCCGCAAAATACCTGATCCAGGTATTTGGGCAAAAATGACAACCAAGAATGGAAACAGAAGATGGGCAGTTTTTGTATGTTGTGGTGTTGGGTATGTGTCAGCAACTGATGACTACAAATTTGTTATTCTATTCCATGATTTACCTTTTTTGTTGGGTGTTCACATTTTCTCGGTGAGAGATAATTCATGGAAAATTGTTCAAGTCCCGGGCATTCACGACGATTGGATCTTCAGCAGCAAGGGGGTTCTTTCAAATGAAGTACTCCATTGGATCACTGAGAACAAAACTAATGAGCTAGTTATCTCTGCTTTCGATTTGGCTGAGGAGGAGTTCCATAAAGAGTCGTTGCTATTCCCTGCGGATGTAGACTGCAACATGATCCAGACTACAACATTTGTGATCCGTGGAGACGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1

Protein Analysis

166

Amino Acids

18.78

Weight (kDa)

5.6

Isoelectric Point (pI)

32.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	2 - 148	3.3e-12	F-box associated beta propeller domain
FBA_3	PF08268	3 - 140	4.6e-06	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41860 FvH4_5g17340
rosa_chinensis	RchiOBHm_Chr4g0389261 RchiOBHm_Chr5g0075701
rosa_multiflora	Rmu_sc0002398.1_g000004 Rmu_sc0003175.1_g000007 Rmu_sc0007018.1_g000001 Rmu_sc0012670.1_g000004
rosa_roxburghii	Rroxscaffold_2G00133960
rosa_rugosa	Rorug03G0366900.1 Rorug04G0064600 Rorug05G0442200
rosa_samantha	Rh5AG498600 Rh5AG498700 Rh5AG501200 Rh5BG519800 Rh5CG543800 Rh5DG529700
rosa_wichuraiana	Rw5G046280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	450
AciI	CCGC	2 cut(s)	85, 443
AclWI	GGATC	5 cut(s)	92, 317, 362, 457, 478
AcsI	RAATTY	1 cut(s)	200
AcuI	CTGAAG	1 cut(s)	298
AfaI	GTAC	2 cut(s)	46, 345
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	3 cut(s)	72, 284, 336
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	1 cut(s)	379
AluI	AGCT	1 cut(s)	379
Alw26I	GTCTC	1 cut(s)	486
AlwI	GGATC	5 cut(s)	92, 317, 362, 457, 478
AlwNI	CAGNNNCTG	1 cut(s)	188
Ama87I	CYCGRG	1 cut(s)	289
ApeKI	GCWGC	1 cut(s)	318
ApoI	RAATTY	1 cut(s)	200
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AsuC2I	CCSGG	2 cut(s)	290, 291
AsuHPI	GGTGA	1 cut(s)	268
AvaI	CYCGRG	1 cut(s)	289
BbvCI	CCTCAGC	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	330
BccI	CCATC	1 cut(s)	138
BciT130I	CCWGG	1 cut(s)	102
BcnI	CCSGG	2 cut(s)	290, 291
BcoDI	GTCTC	1 cut(s)	486
BfaI	CTAG	1 cut(s)	380
BisI	GCNGC	1 cut(s)	319
BlsI	GCNGC	1 cut(s)	320
BmcAI	AGTACT	1 cut(s)	345
Bme1390I	CCNGG	3 cut(s)	102, 290, 291
BmeT110I	CYCGRG	1 cut(s)	289
BmrFI	CCNGG	3 cut(s)	102, 290, 291
Bpu10I	CCTNAGC	1 cut(s)	405
BpuMI	CCSGG	2 cut(s)	290, 291
BsaJI	CCNNGG	2 cut(s)	289, 487
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse3DI	GCAATG	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	2 cut(s)	289, 487
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMI	GCAATG	1 cut(s)	19
BseMII	CTCAG	2 cut(s)	351, 396
BseRI	GAGGAG	2 cut(s)	422, 425
BseXI	GCAGC	1 cut(s)	330
BsiHKCI	CYCGRG	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	290
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmAI	GTCTC	1 cut(s)	486
BsmBI	CGTCTC	1 cut(s)	486
BsmFI	GGGAC	1 cut(s)	272
BsmI	GAATGC	2 cut(s)	77, 294
BsoBI	CYCGRG	1 cut(s)	289
Bsp1407I	TGTACA	1 cut(s)	44
Bsp143I	GATC	5 cut(s)	97, 309, 354, 462, 483
BspACI	CCGC	2 cut(s)	85, 443
BspCNI	CTCAG	2 cut(s)	352, 397
BspPI	GGATC	5 cut(s)	92, 317, 362, 457, 478
BsrDI	GCAATG	1 cut(s)	19
BsrGI	TGTACA	1 cut(s)	44
BssECI	CCNNGG	2 cut(s)	289, 487
BssMI	GATC	5 cut(s)	97, 309, 354, 462, 483
Bst2UI	CCWGG	1 cut(s)	102
BstAUI	TGTACA	1 cut(s)	44
BstDEI	CTNAG	3 cut(s)	29, 360, 405
BstDSI	CCRYGG	1 cut(s)	487
BstENI	CCTNNNNNAGG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	451
BstKTI	GATC	5 cut(s)	100, 312, 357, 465, 486
BstMAI	GTCTC	1 cut(s)	486
BstMBI	GATC	5 cut(s)	97, 309, 354, 462, 483
BstNI	CCWGG	1 cut(s)	102
BstSCI	CCNGG	3 cut(s)	100, 288, 289
BstV1I	GCAGC	1 cut(s)	330
BstX2I	RGATCY	1 cut(s)	309
BstXI	CCANNNNNNTGG	1 cut(s)	108
BstYI	RGATCY	1 cut(s)	309
BtgI	CCRYGG	1 cut(s)	487
BtsCI	GGATG	1 cut(s)	451
BtsIMutI	CAGTG	1 cut(s)	357
CaiI	CAGNNNCTG	1 cut(s)	188
Cfr9I	CCCGGG	1 cut(s)	289
Csp6I	GTAC	2 cut(s)	45, 344
CviAII	CATG	3 cut(s)	218, 270, 460
CviJI	RGCY	4 cut(s)	5, 67, 379, 404
CviKI_1	RGCY	4 cut(s)	5, 67, 379, 404
CviQI	GTAC	2 cut(s)	45, 344
DdeI	CTNAG	3 cut(s)	29, 360, 405
DpnI	GATC	5 cut(s)	99, 311, 356, 464, 485
DpnII	GATC	5 cut(s)	97, 309, 354, 462, 483
Eco57I	CTGAAG	1 cut(s)	298
Eco88I	CYCGRG	1 cut(s)	289
EcoNI	CCTNNNNNAGG	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	100
Esp3I	CGTCTC	1 cut(s)	486
FaeI	CATG	3 cut(s)	221, 273, 463
FaiI	YATR	6 cut(s)	160, 177, 219, 271, 420, 461
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	3 cut(s)	217, 269, 459
FblI	GTMKAC	1 cut(s)	450
Fnu4HI	GCNGC	1 cut(s)	319
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	1 cut(s)	319
FspBI	CTAG	1 cut(s)	380
GluI	GCNGC	1 cut(s)	319
HapII	CCGG	1 cut(s)	290
Hin1II	CATG	3 cut(s)	221, 273, 463
HinfI	GANTC	1 cut(s)	425
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	2 cut(s)	244, 451
Hpy188III	TCNNGA	3 cut(s)	61, 299, 466
Hpy8I	GTNNAC	2 cut(s)	244, 451
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	1 cut(s)	78
HpyCH4V	TGCA	3 cut(s)	12, 77, 456
HpyF3I	CTNAG	3 cut(s)	29, 360, 405
Hsp92II	CATG	3 cut(s)	221, 273, 463
Kzo9I	GATC	5 cut(s)	97, 309, 354, 462, 483
LpnPI	CCDG	7 cut(s)	46, 87, 108, 114, 303, 453, 479
Lsp1109I	GCAGC	1 cut(s)	330
MaeI	CTAG	1 cut(s)	380
MalI	GATC	5 cut(s)	99, 311, 356, 464, 485
MboI	GATC	5 cut(s)	97, 309, 354, 462, 483
MboII	GAAGA	3 cut(s)	73, 153, 304
MflI	RGATCY	1 cut(s)	309
MluCI	AATT	4 cut(s)	24, 200, 265, 276
MlyI	GAGTC	1 cut(s)	434
MnlI	CCTC	2 cut(s)	400, 403
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	3 cut(s)	102, 290, 291
Mva1269I	GAATGC	2 cut(s)	77, 294
MvaI	CCWGG	1 cut(s)	102
NciI	CCSGG	2 cut(s)	290, 291
NdeII	GATC	5 cut(s)	97, 309, 354, 462, 483
NlaIII	CATG	3 cut(s)	221, 273, 463
PctI	GAATGC	2 cut(s)	77, 294
PkrI	GCNGC	1 cut(s)	320
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PstNI	CAGNNNCTG	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	309
RsaI	GTAC	2 cut(s)	46, 345
RsaNI	GTAC	2 cut(s)	45, 344
SatI	GCNGC	1 cut(s)	319
Sau3AI	GATC	5 cut(s)	97, 309, 354, 462, 483
ScaI	AGTACT	1 cut(s)	345
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	3 cut(s)	102, 290, 291
SetI	ASST	4 cut(s)	97, 106, 229, 381
SmaI	CCCGGG	1 cut(s)	291
Sse9I	AATT	4 cut(s)	24, 200, 265, 276
SsiI	CCGC	2 cut(s)	85, 443
SspMI	CTAG	1 cut(s)	380
StyD4I	CCNGG	3 cut(s)	100, 288, 289
TaqI	TCGA	1 cut(s)	396
TasI	AATT	4 cut(s)	24, 200, 265, 276
TatI	WGTACW	2 cut(s)	44, 343
TscAI	CASTG	1 cut(s)	364
TseI	GCWGC	1 cut(s)	318
TspDTI	ATGAA	2 cut(s)	258, 354
TspGWI	ACGGA	1 cut(s)	476
TspMI	CCCGGG	1 cut(s)	289
TspRI	CASTG	1 cut(s)	364
XagI	CCTNNNNNAGG	1 cut(s)	99
XapI	RAATTY	1 cut(s)	200
XmaI	CCCGGG	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	450
XspI	CTAG	1 cut(s)	380
ZrmI	AGTACT	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.