Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0012601

Physical Location & Seq

Genomic Coordinates Forward (+)

80391782 .. 80392720

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G046280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTCAGAGAAGCAGAAGAAGAAGAAGAAGAAGAATGTTGTCTTTGATCTCCCTGAAGATATTATTGTAAAGATTCTATGTAGGTTGCCTGTCAAAACTTTGATTCGATTCACTTGTGTGTCAAAACGTTGGCGTTCTATAATAATCTCTGACCCTCAGTTTGCTAAATCCCAACTCAAGCTAGCATCTCAGCAGAAAGCCCTCTGTCATAGATTTCTAGTCAGCATCCTCTCTCTACTTGAAGCCCATATCCAGTGTCGATGCGACTTCTTAGAATCTTCAGTAAAAAAGGCAGCATTGTCCCAACTCCAGACTAAGTTTCGAACCTTAGATTTGGAAGCGCCCACTCAATTTGGAAATGCTTCTTCGGTCAAGATTCTCACCTCCCCATTTGAGGGGCTTGTCAGGCCAATGGCTACTTGCAATGGTTTGGTAATTCTAGGTGATGTCCATTGTACAAACTTGTCTATCTGGAAGCCTTCAACTGCATTCTTCCGCAAAATACCTGATCCAGGTATTTGGGCAAAAATGACAACCAGAATGGAAACAGAAGATGGGCAGTTTTTGTATGTTGTGGTGTTGGGTATGTGTCAGCAACTGATGACTACAAATTTGTTATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1

Protein Analysis

207

Amino Acids

23.49

Weight (kDa)

9.65

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	16 - 52	1.1e-11	F-box domain
F-box-like	PF12937	16 - 51	6.8e-09	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41860 FvH4_5g17340
rosa_chinensis	RchiOBHm_Chr4g0389261 RchiOBHm_Chr5g0075701
rosa_multiflora	Rmu_sc0002398.1_g000004 Rmu_sc0003175.1_g000007 Rmu_sc0007018.1_g000001 Rmu_sc0012670.1_g000004
rosa_roxburghii	Rroxscaffold_2G00133960
rosa_rugosa	Rorug03G0366900.1 Rorug04G0064600 Rorug05G0442200
rosa_samantha	Rh5AG498600 Rh5AG498700 Rh5AG501200 Rh5BG519800 Rh5CG543800 Rh5DG529700
rosa_wichuraiana	Rw5G046280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	496
AclI	AACGTT	1 cut(s)	127
AclWI	GGATC	1 cut(s)	503
AcsI	RAATTY	1 cut(s)	610
AcuI	CTGAAG	2 cut(s)	75, 264
AfaI	GTAC	1 cut(s)	457
AfiI	CCNNNNNNNGG	3 cut(s)	394, 395, 512
AgsI	TTSAA	2 cut(s)	242, 483
AjnI	CCWGG	1 cut(s)	511
AleI	CACNNNNGTG	1 cut(s)	116
AluBI	AGCT	1 cut(s)	181
AluI	AGCT	1 cut(s)	181
AlwI	GGATC	1 cut(s)	503
AlwNI	CAGNNNCTG	1 cut(s)	598
AoxI	GGCC	1 cut(s)	407
ApeKI	GCWGC	1 cut(s)	293
ApoI	RAATTY	1 cut(s)	610
ArsI	GACNNNNNNTTYG	3 cut(s)	143, 175, 595
Asp700I	GAANNNNTTC	1 cut(s)	361
AspLEI	GCGC	1 cut(s)	343
AsuHPI	GGTGA	2 cut(s)	373, 455
AsuII	TTCGAA	1 cut(s)	322
AsuNHI	GCTAGC	1 cut(s)	181
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	1 cut(s)	548
BciT130I	CCWGG	1 cut(s)	513
BfaI	CTAG	3 cut(s)	182, 218, 440
BfoI	RGCGCY	1 cut(s)	344
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	1 cut(s)	513
BmrFI	CCNGG	1 cut(s)	513
BmsI	GCATC	3 cut(s)	194, 234, 251
BmtI	GCTAGC	1 cut(s)	185
BpmI	CTGGAG	1 cut(s)	293
Bpu14I	TTCGAA	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	3 cut(s)	394, 395, 512
Bse1I	ACTGG	1 cut(s)	253
Bse3DI	GCAATG	1 cut(s)	430
BseBI	CCWGG	1 cut(s)	513
BseGI	GGATG	1 cut(s)	225
BseLI	CCNNNNNNNGG	3 cut(s)	394, 395, 512
BseMI	GCAATG	1 cut(s)	430
BseMII	CTCAG	2 cut(s)	170, 203
BseNI	ACTGG	1 cut(s)	253
BseXI	GCAGC	1 cut(s)	305
BshFI	GGCC	1 cut(s)	409
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	3 cut(s)	394, 395, 512
BsmFI	GGGAC	1 cut(s)	286
BsmI	GAATGC	1 cut(s)	488
BsnI	GGCC	1 cut(s)	409
Bsp119I	TTCGAA	1 cut(s)	322
Bsp1407I	TGTACA	1 cut(s)	455
Bsp143I	GATC	2 cut(s)	46, 508
BspACI	CCGC	1 cut(s)	496
BspANI	GGCC	1 cut(s)	409
BspCNI	CTCAG	2 cut(s)	169, 202
BspOI	GCTAGC	1 cut(s)	185
BspPI	GGATC	1 cut(s)	503
BspT104I	TTCGAA	1 cut(s)	322
BsrDI	GCAATG	1 cut(s)	430
BsrGI	TGTACA	1 cut(s)	455
BsrI	ACTGG	1 cut(s)	253
BssMI	GATC	2 cut(s)	46, 508
Bst2UI	CCWGG	1 cut(s)	513
BstAUI	TGTACA	1 cut(s)	455
BstBI	TTCGAA	1 cut(s)	322
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	5 cut(s)	156, 189, 271, 315, 328
BstENI	CCTNNNNNAGG	1 cut(s)	510
BstF5I	GGATG	1 cut(s)	225
BstH2I	RGCGCY	1 cut(s)	344
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	2 cut(s)	49, 511
BstMBI	GATC	2 cut(s)	46, 508
BstMWI	GCNNNNNNNGC	1 cut(s)	406
BstNI	CCWGG	1 cut(s)	513
BstSCI	CCNGG	1 cut(s)	511
BstV1I	GCAGC	1 cut(s)	305
BstXI	CCANNNNNNTGG	1 cut(s)	519
BsuRI	GGCC	1 cut(s)	409
BtsCI	GGATG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	260
Cac8I	GCNNGC	1 cut(s)	183
CaiI	CAGNNNCTG	1 cut(s)	598
CfoI	GCGC	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	456
CspCI	CAANNNNNGTGG	2 cut(s)	334, 369
CviJI	RGCY	7 cut(s)	181, 200, 245, 400, 409, 416, 478
CviKI_1	RGCY	7 cut(s)	181, 200, 245, 400, 409, 416, 478
CviQI	GTAC	1 cut(s)	456
DdeI	CTNAG	5 cut(s)	156, 189, 271, 315, 328
DpnI	GATC	2 cut(s)	48, 510
DpnII	GATC	2 cut(s)	46, 508
Eco57I	CTGAAG	2 cut(s)	75, 264
EcoNI	CCTNNNNNAGG	1 cut(s)	510
EcoRII	CCWGG	1 cut(s)	511
FaiI	YATR	6 cut(s)	79, 140, 210, 249, 570, 587
FaqI	GGGAC	1 cut(s)	286
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	3 cut(s)	182, 218, 440
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	293
HaeII	RGCGCY	1 cut(s)	344
HaeIII	GGCC	1 cut(s)	409
HhaI	GCGC	1 cut(s)	343
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HinfI	GANTC	5 cut(s)	73, 103, 108, 275, 376
HphI	GGTGA	2 cut(s)	373, 455
Hpy188I	TCNGA	2 cut(s)	7, 151
Hpy188III	TCNNGA	3 cut(s)	310, 373, 472
HpyAV	CCTTC	1 cut(s)	489
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	2 cut(s)	423, 488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	406
HpyF3I	CTNAG	5 cut(s)	156, 189, 271, 315, 328
HpySE526I	ACGT	1 cut(s)	127
HspAI	GCGC	1 cut(s)	341
Kzo9I	GATC	2 cut(s)	46, 508
Lsp1109I	GCAGC	1 cut(s)	305
LweI	GCATC	3 cut(s)	194, 234, 251
MaeI	CTAG	3 cut(s)	182, 218, 440
MaeII	ACGT	1 cut(s)	127
MalI	GATC	2 cut(s)	48, 510
MboI	GATC	2 cut(s)	46, 508
MluCI	AATT	3 cut(s)	350, 435, 610
MnlI	CCTC	5 cut(s)	165, 212, 239, 388, 394
MroXI	GAANNNNTTC	1 cut(s)	361
MslI	CAYNNNNRTG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	513
Mva1269I	GAATGC	1 cut(s)	488
MvaI	CCWGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	1 cut(s)	406
NdeII	GATC	2 cut(s)	46, 508
NheI	GCTAGC	1 cut(s)	181
NspV	TTCGAA	1 cut(s)	322
OliI	CACNNNNGTG	1 cut(s)	116
PctI	GAATGC	1 cut(s)	488
PdmI	GAANNNNTTC	1 cut(s)	361
PfeI	GAWTC	5 cut(s)	73, 103, 108, 275, 376
PkrI	GCNGC	1 cut(s)	295
Psp1406I	AACGTT	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
PstNI	CAGNNNCTG	1 cut(s)	598
RsaI	GTAC	1 cut(s)	457
RsaNI	GTAC	1 cut(s)	456
RseI	CAYNNNNRTG	1 cut(s)	116
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	2 cut(s)	46, 508
ScrFI	CCNGG	1 cut(s)	513
SetI	ASST	8 cut(s)	86, 130, 183, 329, 386, 445, 508, 517
SfaNI	GCATC	3 cut(s)	194, 234, 251
SfuI	TTCGAA	1 cut(s)	322
SmiMI	CAYNNNNRTG	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	3 cut(s)	350, 435, 610
SsiI	CCGC	1 cut(s)	496
SspMI	CTAG	3 cut(s)	182, 218, 440
StyD4I	CCNGG	1 cut(s)	511
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	3 cut(s)	106, 259, 322
TaqII	GACCGA	1 cut(s)	358
TasI	AATT	3 cut(s)	350, 435, 610
TatI	WGTACW	1 cut(s)	455
TfiI	GAWTC	5 cut(s)	73, 103, 108, 275, 376
TscAI	CASTG	1 cut(s)	260
TseI	GCWGC	1 cut(s)	293
TspRI	CASTG	1 cut(s)	260
XagI	CCTNNNNNAGG	1 cut(s)	510
XapI	RAATTY	1 cut(s)	610
XmnI	GAANNNNTTC	1 cut(s)	361
XspI	CTAG	3 cut(s)	182, 218, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.