Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002398.1

Orthogroup ID

OG0012601

Physical Location & Seq

Genomic Coordinates Reverse (-)

23312 .. 24988

Gene Structure 1677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002398.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atggtcggacgggatttgggatcagggatttggtctggtgatcggagaatggggcggagttggtccaagcttgttggatctcagtttgtggcggtgactgcaaggggagggggtgtgtggcagcagggagtttccggctgtatggcgtcgttcaagcattcggatcttgcagcagggattaaggaggacgacggtgggtttggaatggacgacagtgggtgtccaatttctggcaatgtttgttcgacggcggctggggtccgagagcggcggcggagcgacgatctgggagataggaagattgtggcagcgcagacggcgcatgtggtgggagatagcataggctggaccataccacagaacggtgctcaagagtatttcacttgggcgtctggacagaagttcctagttggtgatatatgttctgagtatgattcccatctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

148

Amino Acids

15.68

Weight (kDa)

5.86

Isoelectric Point (pI)

33.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41860 FvH4_5g17340
rosa_chinensis	RchiOBHm_Chr4g0389261 RchiOBHm_Chr5g0075701
rosa_multiflora	Rmu_sc0002398.1_g000004 Rmu_sc0003175.1_g000007 Rmu_sc0007018.1_g000001 Rmu_sc0012670.1_g000004
rosa_roxburghii	Rroxscaffold_2G00133960
rosa_rugosa	Rorug03G0366900.1 Rorug04G0064600 Rorug05G0442200
rosa_samantha	Rh5AG498600 Rh5AG498700 Rh5AG501200 Rh5BG519800 Rh5CG543800 Rh5DG529700
rosa_wichuraiana	Rw5G046280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	230
AccBSI	CCGCTC	1 cut(s)	268
AciI	CCGC	6 cut(s)	55, 92, 251, 268, 271, 274
AclWI	GGATC	3 cut(s)	28, 85, 171
AcyI	GRCGYC	2 cut(s)	146, 389
AfiI	CCNNNNNNNGG	2 cut(s)	230, 362
AgsI	TTSAA	1 cut(s)	154
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw21I	GWGCWC	1 cut(s)	370
AlwI	GGATC	3 cut(s)	28, 85, 171
ApeKI	GCWGC	3 cut(s)	121, 170, 308
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
AspLEI	GCGC	2 cut(s)	313, 322
AspS9I	GGNCC	3 cut(s)	63, 259, 348
AsuHPI	GGTGA	3 cut(s)	50, 106, 425
AvaII	GGWCC	3 cut(s)	63, 259, 348
Bbv12I	GWGCWC	1 cut(s)	370
BbvI	GCAGC	3 cut(s)	133, 182, 320
BceAI	ACGGC	2 cut(s)	264, 333
BfaI	CTAG	2 cut(s)	407, 445
BisI	GCNGC	6 cut(s)	122, 171, 252, 269, 272, 309
BlsI	GCNGC	6 cut(s)	123, 172, 253, 270, 273, 310
Bme18I	GGWCC	3 cut(s)	63, 259, 348
BmgT120I	GGNCC	3 cut(s)	63, 259, 348
BmiI	GGNNCC	1 cut(s)	260
BpuEI	CTTGAG	1 cut(s)	354
BsaBI	GATNNNNATC	1 cut(s)	438
BsaHI	GRCGYC	2 cut(s)	146, 389
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 362
Bse3DI	GCAATG	1 cut(s)	241
Bse8I	GATNNNNATC	1 cut(s)	438
BseJI	GATNNNNATC	1 cut(s)	438
BseLI	CCNNNNNNNGG	2 cut(s)	230, 362
BseMI	GCAATG	1 cut(s)	241
BseMII	CTCAG	2 cut(s)	95, 417
BseXI	GCAGC	3 cut(s)	133, 182, 320
BseYI	CCCAGC	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	370
BsiSI	CCGG	1 cut(s)	135
BslI	CCNNNNNNNGG	2 cut(s)	230, 362
BsmI	GAATGC	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp143I	GATC	5 cut(s)	20, 40, 77, 163, 283
BspACI	CCGC	6 cut(s)	55, 92, 251, 268, 271, 274
BspCNI	CTCAG	2 cut(s)	94, 418
BspLI	GGNNCC	1 cut(s)	260
BspPI	GGATC	3 cut(s)	28, 85, 171
BsrBI	CCGCTC	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	241
BssMI	GATC	5 cut(s)	20, 40, 77, 163, 283
BssNI	GRCGYC	2 cut(s)	146, 389
Bst4CI	ACNGT	3 cut(s)	194, 215, 365
BstACI	GRCGYC	2 cut(s)	146, 389
BstDEI	CTNAG	2 cut(s)	81, 426
BstHHI	GCGC	2 cut(s)	313, 322
BstKTI	GATC	5 cut(s)	23, 43, 80, 166, 286
BstMBI	GATC	5 cut(s)	20, 40, 77, 163, 283
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 317, 319
BstNSI	RCATGY	1 cut(s)	326
BstV1I	GCAGC	3 cut(s)	133, 182, 320
BstX2I	RGATCY	2 cut(s)	77, 163
BstYI	RGATCY	2 cut(s)	77, 163
BtsIMutI	CAGTG	1 cut(s)	220
CfoI	GCGC	2 cut(s)	313, 322
Cfr13I	GGNCC	3 cut(s)	63, 259, 348
CseI	GACGC	2 cut(s)	135, 378
CviAII	CATG	1 cut(s)	323
CviJI	RGCY	4 cut(s)	70, 138, 254, 345
CviKI_1	RGCY	4 cut(s)	70, 138, 254, 345
DdeI	CTNAG	2 cut(s)	81, 426
DpnI	GATC	5 cut(s)	22, 42, 79, 165, 285
DpnII	GATC	5 cut(s)	20, 40, 77, 163, 283
EciI	GGCGGA	2 cut(s)	70, 289
Eco47I	GGWCC	3 cut(s)	63, 259, 348
FaeI	CATG	1 cut(s)	326
FaiI	YATR	7 cut(s)	143, 324, 341, 353, 419, 421, 432
FatI	CATG	1 cut(s)	322
Fnu4HI	GCNGC	6 cut(s)	122, 171, 252, 269, 272, 309
Fsp4HI	GCNGC	6 cut(s)	122, 171, 252, 269, 272, 309
FspBI	CTAG	2 cut(s)	407, 445
GlaI	GCGC	2 cut(s)	312, 321
GluI	GCNGC	6 cut(s)	122, 171, 252, 269, 272, 309
GsaI	CCCAGC	1 cut(s)	258
HapII	CCGG	1 cut(s)	135
HgaI	GACGC	2 cut(s)	135, 378
HhaI	GCGC	2 cut(s)	313, 322
Hin1I	GRCGYC	2 cut(s)	146, 389
Hin1II	CATG	1 cut(s)	326
Hin6I	GCGC	2 cut(s)	311, 320
HinP1I	GCGC	2 cut(s)	311, 320
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	1 cut(s)	434
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	3 cut(s)	50, 106, 425
Hpy188I	TCNGA	5 cut(s)	8, 45, 163, 263, 427
Hpy188III	TCNNGA	2 cut(s)	371, 393
Hpy99I	CGWCG	4 cut(s)	151, 194, 250, 284
HpyCH4III	ACNGT	3 cut(s)	194, 215, 365
HpyCH4V	TGCA	2 cut(s)	101, 170
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 317, 319
HpyF3I	CTNAG	2 cut(s)	81, 426
Hsp92I	GRCGYC	2 cut(s)	146, 389
Hsp92II	CATG	1 cut(s)	326
HspAI	GCGC	2 cut(s)	311, 320
Kzo9I	GATC	5 cut(s)	20, 40, 77, 163, 283
LmnI	GCTCC	1 cut(s)	276
Lsp1109I	GCAGC	3 cut(s)	133, 182, 320
MaeI	CTAG	2 cut(s)	407, 445
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	5 cut(s)	22, 42, 79, 165, 285
MbiI	CCGCTC	1 cut(s)	268
MboI	GATC	5 cut(s)	20, 40, 77, 163, 283
MboII	GAAGA	1 cut(s)	310
MflI	RGATCY	2 cut(s)	77, 163
MhlI	GDGCHC	1 cut(s)	370
MluCI	AATT	1 cut(s)	225
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	2 cut(s)	101, 178
MseI	TTAA	1 cut(s)	180
MspI	CCGG	1 cut(s)	135
Mva1269I	GAATGC	1 cut(s)	157
MwoI	GCNNNNNNNGC	3 cut(s)	98, 317, 319
NdeII	GATC	5 cut(s)	20, 40, 77, 163, 283
NlaIII	CATG	1 cut(s)	326
NlaIV	GGNNCC	1 cut(s)	260
NmuCI	GTSAC	1 cut(s)	94
NspI	RCATGY	1 cut(s)	326
PctI	GAATGC	1 cut(s)	157
PfeI	GAWTC	1 cut(s)	434
PflMI	CCANNNNNTGG	1 cut(s)	230
PkrI	GCNGC	6 cut(s)	123, 172, 253, 270, 273, 310
PspFI	CCCAGC	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	260
PspPI	GGNCC	3 cut(s)	63, 259, 348
PsuI	RGATCY	2 cut(s)	77, 163
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	6 cut(s)	122, 171, 252, 269, 272, 309
Sau3AI	GATC	5 cut(s)	20, 40, 77, 163, 283
Sau96I	GGNCC	3 cut(s)	63, 259, 348
SduI	GDGCHC	1 cut(s)	370
SetI	ASST	1 cut(s)	72
SinI	GGWCC	3 cut(s)	63, 259, 348
SmlI	CTYRAG	1 cut(s)	369
SmoI	CTYRAG	1 cut(s)	369
Sse9I	AATT	1 cut(s)	225
SsiI	CCGC	6 cut(s)	55, 92, 251, 268, 271, 274
SspMI	CTAG	2 cut(s)	407, 445
TaaI	ACNGT	3 cut(s)	194, 215, 365
TaqI	TCGA	1 cut(s)	245
TasI	AATT	1 cut(s)	225
TauI	GCSGC	3 cut(s)	254, 271, 274
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	3 cut(s)	121, 170, 308
Tsp45I	GTSAC	1 cut(s)	94
TspRI	CASTG	1 cut(s)	220
Van91I	CCANNNNNTGG	1 cut(s)	230
VpaK11BI	GGWCC	3 cut(s)	63, 259, 348
XceI	RCATGY	1 cut(s)	326
XspI	CTAG	2 cut(s)	407, 445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.