Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0012601

Physical Location & Seq

Genomic Coordinates Forward (+)

84543558 .. 84543869

Gene Structure 312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG498600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGAGAGAATACAGAGTACTTGAATCTTGGATCAAACTCTTTAAATTTAGTGTAGACGATATTCCAGGTGTGTTTGTTTCACAAATTCCTTTGTTTCAATTTTTCGTTTCGGAAAGTGGTACTGCTTTCATCAATTCAGATTTCAAGGAGCTGGTCCGAATTGAATGCCACAAAGAAGAGAAGCCGGTTTTGACTGGCCGGTATAAGATTGAGAAGTGGGAGCCCTTGAATTTAGGTTTATGGGAAAAGGAGGATGCAAATTTTTTTTCGGTGATGTTTTACGATGAAACTTTAGTTTCAGTTCCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1

Protein Analysis

103

Amino Acids

12.23

Weight (kDa)

4.82

Isoelectric Point (pI)

39.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41860 FvH4_5g17340
rosa_chinensis	RchiOBHm_Chr4g0389261 RchiOBHm_Chr5g0075701
rosa_multiflora	Rmu_sc0002398.1_g000004 Rmu_sc0003175.1_g000007 Rmu_sc0007018.1_g000001 Rmu_sc0012670.1_g000004
rosa_roxburghii	Rroxscaffold_2G00133960
rosa_rugosa	Rorug03G0366900.1 Rorug04G0064600 Rorug05G0442200
rosa_samantha	Rh5AG498600 Rh5AG498700 Rh5AG501200 Rh5BG519800 Rh5CG543800 Rh5DG529700
rosa_wichuraiana	Rw5G046280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	38
AcoI	YGGCCR	1 cut(s)	196
AcsI	RAATTY	4 cut(s)	44, 84, 229, 259
AfaI	GTAC	2 cut(s)	18, 121
AgsI	TTSAA	5 cut(s)	23, 98, 145, 164, 229
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
AlwI	GGATC	1 cut(s)	38
AlwNI	CAGNNNCTG	1 cut(s)	305
AoxI	GGCC	1 cut(s)	196
ApoI	RAATTY	4 cut(s)	44, 84, 229, 259
AspS9I	GGNCC	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	154
BanII	GRGCYC	1 cut(s)	225
BcgI	CGANNNNNNTGC	2 cut(s)	147, 181
BciT130I	CCWGG	1 cut(s)	66
BmcAI	AGTACT	1 cut(s)	18
Bme1390I	CCNGG	1 cut(s)	66
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	1 cut(s)	66
BmsI	GCATC	1 cut(s)	244
Bse118I	RCCGGY	2 cut(s)	184, 198
Bse1I	ACTGG	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	66
BseGI	GGATG	1 cut(s)	259
BseNI	ACTGG	1 cut(s)	199
BshFI	GGCC	1 cut(s)	198
BsiSI	CCGG	2 cut(s)	185, 199
BsmI	GAATGC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	198
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	1 cut(s)	30
BspANI	GGCC	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	222
BspPI	GGATC	1 cut(s)	38
BsrFI	RCCGGY	2 cut(s)	184, 198
BsrI	ACTGG	1 cut(s)	199
BssAI	RCCGGY	2 cut(s)	184, 198
BssMI	GATC	1 cut(s)	30
Bst2UI	CCWGG	1 cut(s)	66
Bst6I	CTCTTC	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	30
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	259
CaiI	CAGNNNCTG	1 cut(s)	305
Cfr10I	RCCGGY	2 cut(s)	184, 198
Cfr13I	GGNCC	1 cut(s)	154
Csp6I	GTAC	2 cut(s)	17, 120
CviJI	RGCY	4 cut(s)	151, 184, 198, 223
CviKI_1	RGCY	4 cut(s)	151, 184, 198, 223
CviQI	GTAC	2 cut(s)	17, 120
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
DraI	TTTAAA	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	225
FaiI	YATR	2 cut(s)	204, 241
FblI	GTMKAC	1 cut(s)	54
FokI	GGATG	1 cut(s)	266
FriOI	GRGCYC	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	198
HapII	CCGG	2 cut(s)	185, 199
HinfI	GANTC	1 cut(s)	23
HpaII	CCGG	2 cut(s)	185, 199
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	3 cut(s)	112, 139, 158
Hpy188III	TCNNGA	1 cut(s)	305
Hpy8I	GTNNAC	1 cut(s)	55
HpyCH4V	TGCA	1 cut(s)	257
Kzo9I	GATC	1 cut(s)	30
LmnI	GCTCC	2 cut(s)	148, 220
LpnPI	CCDG	6 cut(s)	51, 78, 137, 180, 198, 212
LweI	GCATC	1 cut(s)	244
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	1 cut(s)	188
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	7 cut(s)	44, 84, 98, 133, 159, 229, 259
MnlI	CCTC	1 cut(s)	244
MseI	TTAA	1 cut(s)	42
MspI	CCGG	2 cut(s)	185, 199
MspR9I	CCNGG	1 cut(s)	66
Mva1269I	GAATGC	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	66
NdeII	GATC	1 cut(s)	30
NlaIV	GGNNCC	1 cut(s)	222
PctI	GAATGC	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	154
PstNI	CAGNNNCTG	1 cut(s)	305
RsaI	GTAC	2 cut(s)	18, 121
RsaNI	GTAC	2 cut(s)	17, 120
SaqAI	TTAA	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	30
Sau96I	GGNCC	1 cut(s)	154
ScaI	AGTACT	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	66
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	3 cut(s)	70, 153, 238
SfaNI	GCATC	1 cut(s)	244
SinI	GGWCC	1 cut(s)	154
Sse9I	AATT	7 cut(s)	44, 84, 98, 133, 159, 229, 259
StyD4I	CCNGG	1 cut(s)	64
TasI	AATT	7 cut(s)	44, 84, 98, 133, 159, 229, 259
TatI	WGTACW	1 cut(s)	16
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TspDTI	ATGAA	2 cut(s)	118, 300
VpaK11BI	GGWCC	1 cut(s)	154
XapI	RAATTY	4 cut(s)	44, 84, 229, 259
XmiI	GTMKAC	1 cut(s)	54
ZrmI	AGTACT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.