Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0012601

Physical Location & Seq

Genomic Coordinates Reverse (-)

81709891 .. 81712040

Gene Structure 2150 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG529700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTCAGAGAAGAAGAAGAAGAATGTTGTCTTTGATCTCCCTGAAGATATTATTGTAAAGATTCTATGTAGGTTGCCTGTCAAAACTTTGATTCGATTCACTTGTGTGTCAAAACGTTGGCGTTCTATAATAATCTCTGACCCTCAATTTGCTAAATCCCAACTCAAGCTAGCATCTCAGCAGAAAGCCCTCTGTCATAGATTTCTAGTCAGCATCCTCTCTCTACTTGAAGCCCATATCCAGTGTCGATGCGACTTCTTAGATTCTTCAGTAAAAAAGGCAGCATTGTCCCAACTCCACACTAAGTTTCGAACCTTAGATTTGGAAGCGCCCACTCAATTTGGAAATGCTTCTTCGGTCAAGATTCTCACCTCCCCATTTGATGGGCTTGTCAGGCCAATGGCTACTTGCAATAGTTTGGTAATTCTAGGTGATGTCCATTGTACAAACTTGTCTATCTGGAACCCTTCAACTGCATTCTTCCGCAAAATACCTGATCCAGGTATTTGGGCAAAAATGACAACCAAGAATGGAAACAGAAGATGGGCAGTTTTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1

Protein Analysis

186

Amino Acids

21.04

Weight (kDa)

9.91

Isoelectric Point (pI)

49.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	12 - 48	9.1e-12	F-box domain
F-box-like	PF12937	12 - 47	5.7e-09	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41860 FvH4_5g17340
rosa_chinensis	RchiOBHm_Chr4g0389261 RchiOBHm_Chr5g0075701
rosa_multiflora	Rmu_sc0002398.1_g000004 Rmu_sc0003175.1_g000007 Rmu_sc0007018.1_g000001 Rmu_sc0012670.1_g000004
rosa_roxburghii	Rroxscaffold_2G00133960
rosa_rugosa	Rorug03G0366900.1 Rorug04G0064600 Rorug05G0442200
rosa_samantha	Rh5AG498600 Rh5AG498700 Rh5AG501200 Rh5BG519800 Rh5CG543800 Rh5DG529700
rosa_wichuraiana	Rw5G046280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	383
AciI	CCGC	1 cut(s)	484
AclI	AACGTT	1 cut(s)	115
AclWI	GGATC	1 cut(s)	491
AcuI	CTGAAG	2 cut(s)	63, 252
AfaI	GTAC	1 cut(s)	445
AfiI	CCNNNNNNNGG	2 cut(s)	383, 500
AgsI	TTSAA	2 cut(s)	230, 471
AjnI	CCWGG	1 cut(s)	499
AleI	CACNNNNGTG	1 cut(s)	104
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
AlwI	GGATC	1 cut(s)	491
AoxI	GGCC	1 cut(s)	395
ApeKI	GCWGC	1 cut(s)	281
ArsI	GACNNNNNNTTYG	2 cut(s)	131, 163
Asp700I	GAANNNNTTC	1 cut(s)	349
AspLEI	GCGC	1 cut(s)	331
AsuHPI	GGTGA	2 cut(s)	361, 443
AsuII	TTCGAA	1 cut(s)	310
AsuNHI	GCTAGC	1 cut(s)	169
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	2 cut(s)	377, 537
BciT130I	CCWGG	1 cut(s)	501
BfaI	CTAG	3 cut(s)	170, 206, 428
BfoI	RGCGCY	1 cut(s)	332
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
Bme1390I	CCNGG	1 cut(s)	501
BmiI	GGNNCC	1 cut(s)	464
BmrFI	CCNGG	1 cut(s)	501
BmsI	GCATC	3 cut(s)	182, 222, 239
BmtI	GCTAGC	1 cut(s)	173
Bpu14I	TTCGAA	1 cut(s)	310
BpuEI	CTTGAG	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	2 cut(s)	383, 500
Bse1I	ACTGG	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	501
BseGI	GGATG	1 cut(s)	213
BseLI	CCNNNNNNNGG	2 cut(s)	383, 500
BseMII	CTCAG	1 cut(s)	191
BseNI	ACTGG	1 cut(s)	241
BseXI	GCAGC	1 cut(s)	293
BshFI	GGCC	1 cut(s)	397
BslFI	GGGAC	1 cut(s)	274
BslI	CCNNNNNNNGG	2 cut(s)	383, 500
BsmFI	GGGAC	1 cut(s)	274
BsmI	GAATGC	1 cut(s)	476
BsnI	GGCC	1 cut(s)	397
Bsp119I	TTCGAA	1 cut(s)	310
Bsp1407I	TGTACA	1 cut(s)	443
Bsp143I	GATC	2 cut(s)	34, 496
BspACI	CCGC	1 cut(s)	484
BspANI	GGCC	1 cut(s)	397
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	464
BspOI	GCTAGC	1 cut(s)	173
BspPI	GGATC	1 cut(s)	491
BspT104I	TTCGAA	1 cut(s)	310
BsrGI	TGTACA	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	241
BssMI	GATC	2 cut(s)	34, 496
Bst2UI	CCWGG	1 cut(s)	501
BstAUI	TGTACA	1 cut(s)	443
BstBI	TTCGAA	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	4 cut(s)	177, 259, 303, 316
BstENI	CCTNNNNNAGG	1 cut(s)	498
BstF5I	GGATG	1 cut(s)	213
BstH2I	RGCGCY	1 cut(s)	332
BstHHI	GCGC	1 cut(s)	331
BstKTI	GATC	2 cut(s)	37, 499
BstMBI	GATC	2 cut(s)	34, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	394
BstNI	CCWGG	1 cut(s)	501
BstSCI	CCNGG	1 cut(s)	499
BstV1I	GCAGC	1 cut(s)	293
BstXI	CCANNNNNNTGG	1 cut(s)	507
BsuRI	GGCC	1 cut(s)	397
BtsCI	GGATG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	248
Cac8I	GCNNGC	1 cut(s)	171
CfoI	GCGC	1 cut(s)	331
Csp6I	GTAC	1 cut(s)	444
CspCI	CAANNNNNGTGG	2 cut(s)	322, 357
CviJI	RGCY	6 cut(s)	169, 188, 233, 388, 397, 404
CviKI_1	RGCY	6 cut(s)	169, 188, 233, 388, 397, 404
CviQI	GTAC	1 cut(s)	444
DdeI	CTNAG	4 cut(s)	177, 259, 303, 316
DpnI	GATC	2 cut(s)	36, 498
DpnII	GATC	2 cut(s)	34, 496
Eco57I	CTGAAG	2 cut(s)	63, 252
EcoNI	CCTNNNNNAGG	1 cut(s)	498
EcoRII	CCWGG	1 cut(s)	499
FaiI	YATR	5 cut(s)	67, 128, 198, 237, 559
FaqI	GGGAC	1 cut(s)	274
Fnu4HI	GCNGC	1 cut(s)	282
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	3 cut(s)	170, 206, 428
GlaI	GCGC	1 cut(s)	330
GluI	GCNGC	1 cut(s)	282
HaeII	RGCGCY	1 cut(s)	332
HaeIII	GGCC	1 cut(s)	397
HhaI	GCGC	1 cut(s)	331
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HinfI	GANTC	5 cut(s)	61, 91, 96, 263, 364
HphI	GGTGA	2 cut(s)	361, 443
Hpy188I	TCNGA	2 cut(s)	7, 139
Hpy188III	TCNNGA	2 cut(s)	361, 460
HpyAV	CCTTC	1 cut(s)	477
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	2 cut(s)	411, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	394
HpyF3I	CTNAG	4 cut(s)	177, 259, 303, 316
HpySE526I	ACGT	1 cut(s)	115
HspAI	GCGC	1 cut(s)	329
Kzo9I	GATC	2 cut(s)	34, 496
LpnPI	CCDG	8 cut(s)	54, 90, 254, 379, 445, 486, 507, 513
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	3 cut(s)	182, 222, 239
MaeI	CTAG	3 cut(s)	170, 206, 428
MaeII	ACGT	1 cut(s)	115
MalI	GATC	2 cut(s)	36, 498
MboI	GATC	2 cut(s)	34, 496
MboII	GAAGA	9 cut(s)	22, 25, 28, 31, 56, 258, 345, 472, 552
MluCI	AATT	3 cut(s)	146, 338, 423
MnlI	CCTC	4 cut(s)	153, 200, 227, 382
MroXI	GAANNNNTTC	1 cut(s)	349
MslI	CAYNNNNRTG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	501
Mva1269I	GAATGC	1 cut(s)	476
MvaI	CCWGG	1 cut(s)	501
MwoI	GCNNNNNNNGC	1 cut(s)	394
NdeII	GATC	2 cut(s)	34, 496
NheI	GCTAGC	1 cut(s)	169
NlaIV	GGNNCC	1 cut(s)	464
NspV	TTCGAA	1 cut(s)	310
OliI	CACNNNNGTG	1 cut(s)	104
PctI	GAATGC	1 cut(s)	476
PdmI	GAANNNNTTC	1 cut(s)	349
PfeI	GAWTC	5 cut(s)	61, 91, 96, 263, 364
PflMI	CCANNNNNTGG	1 cut(s)	383
PkrI	GCNGC	1 cut(s)	283
Psp1406I	AACGTT	1 cut(s)	115
Psp6I	CCWGG	1 cut(s)	499
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	1 cut(s)	464
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
RseI	CAYNNNNRTG	1 cut(s)	104
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	2 cut(s)	34, 496
ScrFI	CCNGG	1 cut(s)	501
SetI	ASST	8 cut(s)	74, 118, 171, 317, 374, 433, 496, 505
SfaNI	GCATC	3 cut(s)	182, 222, 239
SfuI	TTCGAA	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	3 cut(s)	146, 338, 423
SsiI	CCGC	1 cut(s)	484
SspMI	CTAG	3 cut(s)	170, 206, 428
StyD4I	CCNGG	1 cut(s)	499
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	3 cut(s)	94, 247, 310
TaqII	GACCGA	1 cut(s)	346
TasI	AATT	3 cut(s)	146, 338, 423
TatI	WGTACW	1 cut(s)	443
TfiI	GAWTC	5 cut(s)	61, 91, 96, 263, 364
TscAI	CASTG	1 cut(s)	248
TseI	GCWGC	1 cut(s)	281
TspRI	CASTG	1 cut(s)	248
Van91I	CCANNNNNTGG	1 cut(s)	383
XagI	CCTNNNNNAGG	1 cut(s)	498
XmnI	GAANNNNTTC	1 cut(s)	349
XspI	CTAG	3 cut(s)	170, 206, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.