Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007018.1

Orthogroup ID

OG0012601

Physical Location & Seq

Genomic Coordinates Forward (+)

934 .. 2213

Gene Structure 1280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007018.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

atgtcagagaagaagaagaagaatgttgtctttgatctccctgaagatattattgtaaagattctatgtaggttgcctgtcaaaactttgattcgattcacttgtgtgtcaaaacgttggcgttctataataatctctgaccctcagtttgctaaatcccaactcaagctagcatctcagcagaaagccctctgtcatagatttctagtcagcatcctctctctacttgaagcccatatccagtgtcgatgcgacttcttagaatcttcagtaaaaaaggcagcattgtcccaactccagactaagtttcgaaccttagatttggaagcgcccactcaatttggaaatgcttcttcggtcaagattctcacctccccatttgaggggcttgtcaggccaatggctacttgcaatggtttggtaattctaggtgatgtccatagtacaaacttgtctatctggaacccttcaactgcattcttccgcaaaatacctgatccaggtatttgggaaaaaaggacaaccaagaatggaaacagaagatgggcagtttttgtatgttgtggttttgggtatgtgtcagcaactgatgactacaaatttgttattctattccatgatttaccttttttgttgggtgttcacattttctcggtgagagataattcatggaaaattgttcaagtcccgggcattcacgacgattggatcttcagcagcaagggggttctttcaaatgaagtactccattggatcactgagaacaaaactaatgagctagttatctctgctttcgatttggctgaggaggagttccataaagagtcgttgctattccctgcggatgtagactgcaacgtttatgatccggactacaacatttgtgaggatcctttaggatttgggcactcgagttttggggctgtgttggtcgaggagggccgctgctgggtatctgtcggcggcgtttgttcaacggtggccggggtccgagagcgacagcggagcgatgatctgggatatgggaaggtagtggtggtgctgcagcaattgttttgggctggatctagtaactgggccctctttgcctcatccgattgtggacctgtcctagggctagtggtttttgggcctggggcttcatcttcatcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1

Protein Analysis

384

Amino Acids

42.77

Weight (kDa)

7.08

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41860 FvH4_5g17340
rosa_chinensis	RchiOBHm_Chr4g0389261 RchiOBHm_Chr5g0075701
rosa_multiflora	Rmu_sc0002398.1_g000004 Rmu_sc0003175.1_g000007 Rmu_sc0007018.1_g000001 Rmu_sc0012670.1_g000004
rosa_roxburghii	Rroxscaffold_2G00133960
rosa_rugosa	Rorug03G0366900.1 Rorug04G0064600 Rorug05G0442200
rosa_samantha	Rh5AG498600 Rh5AG498700 Rh5AG501200 Rh5BG519800 Rh5CG543800 Rh5DG529700
rosa_wichuraiana	Rw5G046280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	849
AccIII	TCCGGA	1 cut(s)	868
AciI	CCGC	5 cut(s)	484, 842, 943, 963, 1003
AclI	AACGTT	2 cut(s)	115, 858
AclWI	GGATC	7 cut(s)	491, 716, 761, 860, 884, 897, 1072
AcoI	YGGCCR	1 cut(s)	981
AcsI	RAATTY	1 cut(s)	599
AcuI	CTGAAG	3 cut(s)	63, 252, 697
AfaI	GTAC	2 cut(s)	445, 744
AfiI	CCNNNNNNNGG	5 cut(s)	382, 383, 500, 949, 1112
AgsI	TTSAA	5 cut(s)	230, 471, 683, 735, 975
AjnI	CCWGG	2 cut(s)	499, 1132
AleI	CACNNNNGTG	1 cut(s)	104
AluBI	AGCT	2 cut(s)	169, 778
AluI	AGCT	2 cut(s)	169, 778
AlwI	GGATC	7 cut(s)	491, 716, 761, 860, 884, 897, 1072
AlwNI	CAGNNNCTG	1 cut(s)	587
Ama87I	CYCGRG	2 cut(s)	688, 910
Aor13HI	TCCGGA	1 cut(s)	868
AoxI	GGCC	5 cut(s)	395, 940, 981, 1077, 1130
ApaI	GGGCCC	1 cut(s)	1081
ApeKI	GCWGC	5 cut(s)	281, 717, 945, 1042, 1045
ApoI	RAATTY	1 cut(s)	599
ArsI	GACNNNNNNTTYG	4 cut(s)	131, 163, 584, 616
Asp700I	GAANNNNTTC	1 cut(s)	349
AspA2I	CCTAGG	1 cut(s)	1111
AspLEI	GCGC	1 cut(s)	331
AspS9I	GGNCC	6 cut(s)	940, 988, 1077, 1078, 1103, 1130
AsuC2I	CCSGG	3 cut(s)	689, 690, 985
AsuHPI	GGTGA	3 cut(s)	361, 443, 667
AsuII	TTCGAA	1 cut(s)	310
AsuNHI	GCTAGC	1 cut(s)	169
AvaI	CYCGRG	2 cut(s)	688, 910
AvaII	GGWCC	2 cut(s)	988, 1103
AvrII	CCTAGG	1 cut(s)	1111
BaeGI	GKGCMC	2 cut(s)	909, 1081
BamHI	GGATCC	1 cut(s)	889
BanII	GRGCYC	1 cut(s)	1081
BbvCI	CCTCAGC	1 cut(s)	804
BbvI	GCAGC	5 cut(s)	293, 729, 932, 1029, 1057
BccI	CCATC	1 cut(s)	537
BciT130I	CCWGG	2 cut(s)	501, 1134
BcnI	CCSGG	3 cut(s)	689, 690, 985
BfaI	CTAG	8 cut(s)	170, 206, 428, 779, 1068, 1112, 1118, 1153
BfmI	CTRYAG	1 cut(s)	1043
BfoI	RGCGCY	1 cut(s)	332
BisI	GCNGC	7 cut(s)	282, 718, 943, 946, 964, 1043, 1046
BlnI	CCTAGG	1 cut(s)	1111
BlsI	GCNGC	7 cut(s)	283, 719, 944, 947, 965, 1044, 1047
BmcAI	AGTACT	1 cut(s)	744
Bme1390I	CCNGG	5 cut(s)	501, 689, 690, 985, 1134
Bme18I	GGWCC	2 cut(s)	988, 1103
BmeT110I	CYCGRG	2 cut(s)	688, 910
BmgT120I	GGNCC	6 cut(s)	940, 988, 1077, 1078, 1103, 1130
BmiI	GGNNCC	4 cut(s)	464, 891, 989, 1079
BmrFI	CCNGG	5 cut(s)	501, 689, 690, 985, 1134
BmrI	ACTGGG	1 cut(s)	1084
BmsI	GCATC	3 cut(s)	182, 222, 239
BmtI	GCTAGC	1 cut(s)	173
BmuI	ACTGGG	1 cut(s)	1084
BpmI	CTGGAG	1 cut(s)	281
Bpu10I	CCTNAGC	1 cut(s)	804
Bpu14I	TTCGAA	1 cut(s)	310
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	3 cut(s)	689, 690, 985
BsaJI	CCNNGG	4 cut(s)	688, 984, 1111, 1133
BsaWI	WCCGGW	1 cut(s)	868
Bsc4I	CCNNNNNNNGG	5 cut(s)	382, 383, 500, 949, 1112
Bse1I	ACTGG	2 cut(s)	241, 1079
Bse3DI	GCAATG	1 cut(s)	418
BseAI	TCCGGA	1 cut(s)	868
BseBI	CCWGG	2 cut(s)	501, 1134
BseDI	CCNNGG	4 cut(s)	688, 984, 1111, 1133
BseGI	GGATG	4 cut(s)	213, 850, 1091, 1148
BseLI	CCNNNNNNNGG	5 cut(s)	382, 383, 500, 949, 1112
BseMI	GCAATG	1 cut(s)	418
BseMII	CTCAG	4 cut(s)	158, 191, 750, 795
BseNI	ACTGG	2 cut(s)	241, 1079
BseRI	GAGGAG	3 cut(s)	821, 824, 950
BseSI	GKGCMC	2 cut(s)	909, 1081
BseXI	GCAGC	5 cut(s)	293, 729, 932, 1029, 1057
BseYI	CCCAGC	1 cut(s)	948
BshFI	GGCC	5 cut(s)	397, 942, 983, 1079, 1132
BsiHKCI	CYCGRG	2 cut(s)	688, 910
BsiSI	CCGG	3 cut(s)	689, 869, 984
BslFI	GGGAC	2 cut(s)	274, 671
BslI	CCNNNNNNNGG	5 cut(s)	382, 383, 500, 949, 1112
BsmFI	GGGAC	2 cut(s)	274, 671
BsmI	GAATGC	2 cut(s)	476, 693
BsnI	GGCC	5 cut(s)	397, 942, 983, 1079, 1132
BsoBI	CYCGRG	2 cut(s)	688, 910
Bsp119I	TTCGAA	1 cut(s)	310
Bsp120I	GGGCCC	1 cut(s)	1077
Bsp1286I	GDGCHC	2 cut(s)	909, 1081
Bsp13I	TCCGGA	1 cut(s)	868
Bsp143I	GATC	8 cut(s)	34, 496, 708, 753, 865, 889, 1012, 1064
BspACI	CCGC	5 cut(s)	484, 842, 943, 963, 1003
BspANI	GGCC	5 cut(s)	397, 942, 983, 1079, 1132
BspCNI	CTCAG	4 cut(s)	157, 190, 751, 796
BspEI	TCCGGA	1 cut(s)	868
BspLI	GGNNCC	4 cut(s)	464, 891, 989, 1079
BspMAI	CTGCAG	1 cut(s)	1047
BspOI	GCTAGC	1 cut(s)	173
BspPI	GGATC	7 cut(s)	491, 716, 761, 860, 884, 897, 1072
BspT104I	TTCGAA	1 cut(s)	310
BsrDI	GCAATG	1 cut(s)	418
BsrI	ACTGG	2 cut(s)	241, 1079
BssECI	CCNNGG	4 cut(s)	688, 984, 1111, 1133
BssMI	GATC	8 cut(s)	34, 496, 708, 753, 865, 889, 1012, 1064
BssT1I	CCWWGG	1 cut(s)	1111
Bst2UI	CCWGG	2 cut(s)	501, 1134
Bst4CI	ACNGT	1 cut(s)	979
BstBI	TTCGAA	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	7 cut(s)	144, 177, 259, 303, 316, 759, 804
BstENI	CCTNNNNNAGG	2 cut(s)	498, 1110
BstF5I	GGATG	4 cut(s)	213, 850, 1091, 1148
BstH2I	RGCGCY	1 cut(s)	332
BstHHI	GCGC	1 cut(s)	331
BstKTI	GATC	8 cut(s)	37, 499, 711, 756, 868, 892, 1015, 1067
BstMBI	GATC	8 cut(s)	34, 496, 708, 753, 865, 889, 1012, 1064
BstMWI	GCNNNNNNNGC	2 cut(s)	394, 1085
BstNI	CCWGG	2 cut(s)	501, 1134
BstSCI	CCNGG	5 cut(s)	499, 687, 688, 983, 1132
BstSFI	CTRYAG	1 cut(s)	1043
BstSLI	GKGCMC	2 cut(s)	909, 1081
BstV1I	GCAGC	5 cut(s)	293, 729, 932, 1029, 1057
BstX2I	RGATCY	3 cut(s)	708, 889, 1064
BstXI	CCANNNNNNTGG	1 cut(s)	507
BstYI	RGATCY	3 cut(s)	708, 889, 1064
BsuRI	GGCC	5 cut(s)	397, 942, 983, 1079, 1132
BtgZI	GCGATG	1 cut(s)	1023
BtsCI	GGATG	4 cut(s)	213, 850, 1091, 1148
BtsIMutI	CAGTG	2 cut(s)	248, 756
Cac8I	GCNNGC	1 cut(s)	171
CaiI	CAGNNNCTG	1 cut(s)	587
CfoI	GCGC	1 cut(s)	331
Cfr13I	GGNCC	6 cut(s)	940, 988, 1077, 1078, 1103, 1130
Cfr9I	CCCGGG	1 cut(s)	688
Csp6I	GTAC	2 cut(s)	444, 743
CspCI	CAANNNNNGTGG	2 cut(s)	322, 357
CviAII	CATG	2 cut(s)	617, 669
CviQI	GTAC	2 cut(s)	444, 743
DdeI	CTNAG	7 cut(s)	144, 177, 259, 303, 316, 759, 804
DpnI	GATC	8 cut(s)	36, 498, 710, 755, 867, 891, 1014, 1066
DpnII	GATC	8 cut(s)	34, 496, 708, 753, 865, 889, 1012, 1064
EaeI	YGGCCR	1 cut(s)	981
Eco130I	CCWWGG	1 cut(s)	1111
Eco24I	GRGCYC	1 cut(s)	1081
Eco47I	GGWCC	2 cut(s)	988, 1103
Eco57I	CTGAAG	3 cut(s)	63, 252, 697
Eco88I	CYCGRG	2 cut(s)	688, 910
EcoNI	CCTNNNNNAGG	2 cut(s)	498, 1110
EcoO109I	RGGNCCY	1 cut(s)	1078
EcoRII	CCWGG	2 cut(s)	499, 1132
EcoT14I	CCWWGG	1 cut(s)	1111
EcoT38I	GRGCYC	1 cut(s)	1081
ErhI	CCWWGG	1 cut(s)	1111
FaeI	CATG	2 cut(s)	620, 672
FaqI	GGGAC	2 cut(s)	274, 671
FatI	CATG	2 cut(s)	616, 668
FblI	GTMKAC	1 cut(s)	849
Fnu4HI	GCNGC	7 cut(s)	282, 718, 943, 946, 964, 1043, 1046
FokI	GGATG	4 cut(s)	200, 857, 1078, 1135
FriOI	GRGCYC	1 cut(s)	1081
Fsp4HI	GCNGC	7 cut(s)	282, 718, 943, 946, 964, 1043, 1046
FspBI	CTAG	8 cut(s)	170, 206, 428, 779, 1068, 1112, 1118, 1153
GlaI	GCGC	1 cut(s)	330
GluI	GCNGC	7 cut(s)	282, 718, 943, 946, 964, 1043, 1046
GsaI	CCCAGC	1 cut(s)	952
GsuI	CTGGAG	1 cut(s)	281
HaeII	RGCGCY	1 cut(s)	332
HaeIII	GGCC	5 cut(s)	397, 942, 983, 1079, 1132
HapII	CCGG	3 cut(s)	689, 869, 984
HhaI	GCGC	1 cut(s)	331
Hin1II	CATG	2 cut(s)	620, 672
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HinfI	GANTC	6 cut(s)	61, 91, 96, 263, 364, 824
HpaII	CCGG	3 cut(s)	689, 869, 984
HphI	GGTGA	3 cut(s)	361, 443, 667
Hpy166II	GTNNAC	3 cut(s)	643, 850, 1103
Hpy188I	TCNGA	4 cut(s)	7, 139, 992, 1096
Hpy188III	TCNNGA	5 cut(s)	298, 361, 460, 698, 869
Hpy8I	GTNNAC	3 cut(s)	643, 850, 1103
Hpy99I	CGWCG	1 cut(s)	704
HpyAV	CCTTC	2 cut(s)	477, 1021
HpyCH4III	ACNGT	1 cut(s)	979
HpyCH4IV	ACGT	2 cut(s)	115, 858
HpyCH4V	TGCA	4 cut(s)	411, 476, 855, 1045
HpyF10VI	GCNNNNNNNGC	2 cut(s)	394, 1085
HpyF3I	CTNAG	7 cut(s)	144, 177, 259, 303, 316, 759, 804
HpySE526I	ACGT	2 cut(s)	115, 858
Hsp92II	CATG	2 cut(s)	620, 672
HspAI	GCGC	1 cut(s)	329
Kpn2I	TCCGGA	1 cut(s)	868
Kzo9I	GATC	8 cut(s)	34, 496, 708, 753, 865, 889, 1012, 1064
LmnI	GCTCC	1 cut(s)	1005
Lsp1109I	GCAGC	5 cut(s)	293, 729, 932, 1029, 1057
LweI	GCATC	3 cut(s)	182, 222, 239
MaeI	CTAG	8 cut(s)	170, 206, 428, 779, 1068, 1112, 1118, 1153
MaeII	ACGT	2 cut(s)	115, 858
MaeIII	GTNAC	1 cut(s)	1070
MalI	GATC	8 cut(s)	36, 498, 710, 755, 867, 891, 1014, 1066
MboI	GATC	8 cut(s)	34, 496, 708, 753, 865, 889, 1012, 1064
MfeI	CAATTG	1 cut(s)	1049
MflI	RGATCY	3 cut(s)	708, 889, 1064
MhlI	GDGCHC	2 cut(s)	909, 1081
MluCI	AATT	6 cut(s)	338, 423, 599, 664, 675, 1049
MlyI	GAGTC	1 cut(s)	833
MroI	TCCGGA	1 cut(s)	868
MroXI	GAANNNNTTC	1 cut(s)	349
MslI	CAYNNNNRTG	1 cut(s)	104
MspA1I	CMGCKG	2 cut(s)	945, 1003
MspI	CCGG	3 cut(s)	689, 869, 984
MspR9I	CCNGG	5 cut(s)	501, 689, 690, 985, 1134
MunI	CAATTG	1 cut(s)	1049
Mva1269I	GAATGC	2 cut(s)	476, 693
MvaI	CCWGG	2 cut(s)	501, 1134
MwoI	GCNNNNNNNGC	2 cut(s)	394, 1085
NciI	CCSGG	3 cut(s)	689, 690, 985
NdeII	GATC	8 cut(s)	34, 496, 708, 753, 865, 889, 1012, 1064
NheI	GCTAGC	1 cut(s)	169
NlaIII	CATG	2 cut(s)	620, 672
NlaIV	GGNNCC	4 cut(s)	464, 891, 989, 1079
NspV	TTCGAA	1 cut(s)	310
OliI	CACNNNNGTG	1 cut(s)	104
PaeR7I	CTCGAG	1 cut(s)	910
PctI	GAATGC	2 cut(s)	476, 693
PdmI	GAANNNNTTC	1 cut(s)	349
PfeI	GAWTC	5 cut(s)	61, 91, 96, 263, 364
PkrI	GCNGC	7 cut(s)	283, 719, 944, 947, 965, 1044, 1047
PleI	GAGTC	1 cut(s)	832
PpsI	GAGTC	1 cut(s)	832
Psp1406I	AACGTT	2 cut(s)	115, 858
Psp6I	CCWGG	2 cut(s)	499, 1132
PspFI	CCCAGC	1 cut(s)	948
PspGI	CCWGG	2 cut(s)	499, 1132
PspN4I	GGNNCC	4 cut(s)	464, 891, 989, 1079
PspOMI	GGGCCC	1 cut(s)	1077
PspPI	GGNCC	6 cut(s)	940, 988, 1077, 1078, 1103, 1130
PspXI	VCTCGAGB	1 cut(s)	910
PstI	CTGCAG	1 cut(s)	1047
PstNI	CAGNNNCTG	1 cut(s)	587
PsuI	RGATCY	3 cut(s)	708, 889, 1064
RsaI	GTAC	2 cut(s)	445, 744
RsaNI	GTAC	2 cut(s)	444, 743
RseI	CAYNNNNRTG	1 cut(s)	104
SatI	GCNGC	7 cut(s)	282, 718, 943, 946, 964, 1043, 1046
Sau3AI	GATC	8 cut(s)	34, 496, 708, 753, 865, 889, 1012, 1064
Sau96I	GGNCC	6 cut(s)	940, 988, 1077, 1078, 1103, 1130
ScaI	AGTACT	1 cut(s)	744
SchI	GAGTC	1 cut(s)	833
ScrFI	CCNGG	5 cut(s)	501, 689, 690, 985, 1134
SduI	GDGCHC	2 cut(s)	909, 1081
SfaNI	GCATC	3 cut(s)	182, 222, 239
SfcI	CTRYAG	1 cut(s)	1043
Sfr274I	CTCGAG	1 cut(s)	910
SfuI	TTCGAA	1 cut(s)	310
SinI	GGWCC	2 cut(s)	988, 1103
SlaI	CTCGAG	1 cut(s)	910
SmaI	CCCGGG	1 cut(s)	690
SmiMI	CAYNNNNRTG	1 cut(s)	104
SmlI	CTYRAG	2 cut(s)	164, 910
SmoI	CTYRAG	2 cut(s)	164, 910
Sse9I	AATT	6 cut(s)	338, 423, 599, 664, 675, 1049
SsiI	CCGC	5 cut(s)	484, 842, 943, 963, 1003
SspMI	CTAG	8 cut(s)	170, 206, 428, 779, 1068, 1112, 1118, 1153
StyD4I	CCNGG	5 cut(s)	499, 687, 688, 983, 1132
StyI	CCWWGG	1 cut(s)	1111
TaaI	ACNGT	1 cut(s)	979
TaiI	ACGT	2 cut(s)	118, 861
TaqI	TCGA	6 cut(s)	94, 247, 310, 795, 911, 933
TaqII	GACCGA	1 cut(s)	346
TasI	AATT	6 cut(s)	338, 423, 599, 664, 675, 1049
TatI	WGTACW	2 cut(s)	443, 742
TauI	GCSGC	2 cut(s)	945, 966
TfiI	GAWTC	5 cut(s)	61, 91, 96, 263, 364
TscAI	CASTG	2 cut(s)	248, 763
TseI	GCWGC	5 cut(s)	281, 717, 945, 1042, 1045
TspDTI	ATGAA	4 cut(s)	657, 753, 1131, 1137
TspMI	CCCGGG	1 cut(s)	688
TspRI	CASTG	2 cut(s)	248, 763
VpaK11BI	GGWCC	2 cut(s)	988, 1103
XagI	CCTNNNNNAGG	2 cut(s)	498, 1110
XapI	RAATTY	1 cut(s)	599
XhoI	CTCGAG	1 cut(s)	910
XmaI	CCCGGG	1 cut(s)	688
XmaJI	CCTAGG	1 cut(s)	1111
XmiI	GTMKAC	1 cut(s)	849
XmnI	GAANNNNTTC	1 cut(s)	349
XspI	CTAG	8 cut(s)	170, 206, 428, 779, 1068, 1112, 1118, 1153
ZrmI	AGTACT	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.