RchiOBHm_Chr4g0389261

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0012601
Physical Location & Seq
Reverse (-)
4341935 .. 4344252
2318 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36241

Sequence Viewer

Length: 606 bp
ATGACGCATTGGAAGAGGAAAAGCTTGTTGCCGTCTTCTCTTGCTCTCGTCCGGCTACGCTGCGGCGTTGGCACAGGCCTCTGGCCTGGCCGGCGTGCGTCAGTTGCGGTCGGACGGGATATGGGCTCAGGGATTAGGCCTGGTGATCGGAGCACGGGGCGGAGTTGGTCCAAGATTGTTGGATTTCGGTTTATGGCGGTGACTGCACGGGGAGGGGGTGCACGGCAGCAGGGGGTGTCCGACTGTGGGGCGTCGGTCAGACTTTCGGCTCTTGCAGCAGGAGTTGGGGAGGACGACGGTGGGTTTGACGACAGTGGGTGTCCAATTTCTGGTGTTTCTCGTCATCAGGGATTTGGGCACTCGAGTTTTGGGGCTGTGTTGGTCGAGGAGGGCCGCTGCTGGGTATCTGTCGGCGGCGTTTGTTCGACGGTGGCCGGGGTCCGAGAGCGACGGCGGAGCGATGATCTGGGATATGGGAAGGTAGTGGTGGTGCTGCAGCAATTGTTTTGGGCTGGATCTAGTAACTGGGCCCTCTTTGCCTCATCCGATTGTGGACCTGTCCTAAGGCTAGTGGTTTTTGGGCCTGGGGCTTCATCTTCATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

20.89

Weight (kDa)

10.2

Isoelectric Point (pI)

43.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 329
AciI CCGC 7 cut(s) 63, 107, 160, 197, 394, 414, 454
AclWI GGATC 1 cut(s) 523
AcoI YGGCCR 2 cut(s) 88, 432
AcyI GRCGYC 1 cut(s) 251
AfiI CCNNNNNNNGG 3 cut(s) 246, 329, 400
AjnI CCWGG 3 cut(s) 85, 139, 583
AluBI AGCT 1 cut(s) 24
AluI AGCT 1 cut(s) 24
Alw21I GWGCWC 2 cut(s) 155, 223
Alw44I GTGCAC 1 cut(s) 219
AlwI GGATC 1 cut(s) 523
Ama87I CYCGRG 1 cut(s) 361
AoxI GGCC 8 cut(s) 76, 83, 88, 137, 391, 432, 528, 581
ApaI GGGCCC 1 cut(s) 532
ApaLI GTGCAC 1 cut(s) 219
ApeKI GCWGC 6 cut(s) 60, 226, 275, 396, 493, 496
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
AspS9I GGNCC 7 cut(s) 168, 391, 439, 528, 529, 554, 581
AsuC2I CCSGG 1 cut(s) 436
AsuHPI GGTGA 2 cut(s) 155, 211
AvaI CYCGRG 1 cut(s) 361
AvaII GGWCC 3 cut(s) 168, 439, 554
AxyI CCTNAGG 1 cut(s) 563
BaeGI GKGCMC 3 cut(s) 223, 360, 532
BanII GRGCYC 2 cut(s) 128, 532
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 2 cut(s) 155, 223
BbvI GCAGC 6 cut(s) 47, 238, 287, 383, 480, 508
BceAI ACGGC 3 cut(s) 16, 239, 467
BciT130I CCWGG 3 cut(s) 87, 141, 585
BcnI CCSGG 1 cut(s) 436
BfaI CTAG 3 cut(s) 519, 569, 604
BfmI CTRYAG 1 cut(s) 494
BglI GCCNNNNNGGC 1 cut(s) 91
BisI GCNGC 9 cut(s) 61, 64, 227, 276, 394, 397, 415, 494, 497
BlsI GCNGC 9 cut(s) 62, 65, 228, 277, 395, 398, 416, 495, 498
Bme1390I CCNGG 4 cut(s) 87, 141, 436, 585
Bme18I GGWCC 3 cut(s) 168, 439, 554
BmeT110I CYCGRG 1 cut(s) 361
BmgT120I GGNCC 7 cut(s) 168, 391, 439, 528, 529, 554, 581
BmiI GGNNCC 2 cut(s) 440, 530
BmrFI CCNGG 4 cut(s) 87, 141, 436, 585
BmrI ACTGGG 1 cut(s) 535
BmuI ACTGGG 1 cut(s) 535
BpiI GAAGAC 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 127
BpuMI CCSGG 1 cut(s) 436
BsaHI GRCGYC 1 cut(s) 251
BsaJI CCNNGG 2 cut(s) 435, 584
Bsc4I CCNNNNNNNGG 3 cut(s) 246, 329, 400
Bse118I RCCGGY 1 cut(s) 90
Bse1I ACTGG 1 cut(s) 530
Bse21I CCTNAGG 1 cut(s) 563
BseBI CCWGG 3 cut(s) 87, 141, 585
BseDI CCNNGG 2 cut(s) 435, 584
BseGI GGATG 2 cut(s) 542, 599
BseLI CCNNNNNNNGG 3 cut(s) 246, 329, 400
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 530
BseRI GAGGAG 1 cut(s) 401
BseSI GKGCMC 3 cut(s) 223, 360, 532
BseXI GCAGC 6 cut(s) 47, 238, 287, 383, 480, 508
BseYI CCCAGC 1 cut(s) 399
BsgI GTGCAG 1 cut(s) 189
Bsh1285I CGRYCG 1 cut(s) 111
BshFI GGCC 8 cut(s) 78, 85, 90, 139, 393, 434, 530, 583
BsiEI CGRYCG 1 cut(s) 111
BsiHKAI GWGCWC 2 cut(s) 155, 223
BsiHKCI CYCGRG 1 cut(s) 361
BsiSI CCGG 3 cut(s) 52, 91, 435
BslI CCNNNNNNNGG 3 cut(s) 246, 329, 400
BsnI GGCC 8 cut(s) 78, 85, 90, 139, 393, 434, 530, 583
BsoBI CYCGRG 1 cut(s) 361
Bsp120I GGGCCC 1 cut(s) 528
Bsp1286I GDGCHC 5 cut(s) 128, 155, 223, 360, 532
Bsp143I GATC 3 cut(s) 145, 463, 515
BspACI CCGC 7 cut(s) 63, 107, 160, 197, 394, 414, 454
BspANI GGCC 8 cut(s) 78, 85, 90, 139, 393, 434, 530, 583
BspCNI CTCAG 1 cut(s) 140
BspLI GGNNCC 2 cut(s) 440, 530
BspMAI CTGCAG 1 cut(s) 498
BspPI GGATC 1 cut(s) 523
BsrFI RCCGGY 1 cut(s) 90
BsrI ACTGG 1 cut(s) 530
BssAI RCCGGY 1 cut(s) 90
BssECI CCNNGG 2 cut(s) 435, 584
BssMI GATC 3 cut(s) 145, 463, 515
BssNI GRCGYC 1 cut(s) 251
Bst2UI CCWGG 3 cut(s) 87, 141, 585
Bst4CI ACNGT 4 cut(s) 245, 299, 314, 430
Bst6I CTCTTC 1 cut(s) 8
BstACI GRCGYC 1 cut(s) 251
BstC8I GCNNGC 2 cut(s) 92, 96
BstDEI CTNAG 2 cut(s) 127, 563
BstF5I GGATG 2 cut(s) 542, 599
BstKTI GATC 3 cut(s) 148, 466, 518
BstMBI GATC 3 cut(s) 145, 463, 515
BstMCI CGRYCG 1 cut(s) 111
BstMWI GCNNNNNNNGC 6 cut(s) 69, 91, 104, 203, 275, 536
BstNI CCWGG 3 cut(s) 87, 141, 585
BstSCI CCNGG 4 cut(s) 85, 139, 434, 583
BstSFI CTRYAG 1 cut(s) 494
BstSLI GKGCMC 3 cut(s) 223, 360, 532
BstV1I GCAGC 6 cut(s) 47, 238, 287, 383, 480, 508
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 515
BstYI RGATCY 1 cut(s) 515
Bsu36I CCTNAGG 1 cut(s) 563
BsuRI GGCC 8 cut(s) 78, 85, 90, 139, 393, 434, 530, 583
BtgZI GCGATG 1 cut(s) 474
BtsCI GGATG 2 cut(s) 542, 599
BtsIMutI CAGTG 1 cut(s) 319
Cac8I GCNNGC 2 cut(s) 92, 96
Cfr10I RCCGGY 1 cut(s) 90
Cfr13I GGNCC 7 cut(s) 168, 391, 439, 528, 529, 554, 581
CseI GACGC 3 cut(s) 13, 87, 240
DdeI CTNAG 2 cut(s) 127, 563
DpnI GATC 3 cut(s) 147, 465, 517
DpnII GATC 3 cut(s) 145, 463, 515
EaeI YGGCCR 2 cut(s) 88, 432
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
EciI GGCGGA 2 cut(s) 175, 469
Eco147I AGGCCT 2 cut(s) 78, 139
Eco24I GRGCYC 2 cut(s) 128, 532
Eco47I GGWCC 3 cut(s) 168, 439, 554
Eco81I CCTNAGG 1 cut(s) 563
Eco88I CYCGRG 1 cut(s) 361
EcoO109I RGGNCCY 1 cut(s) 529
EcoRII CCWGG 3 cut(s) 85, 139, 583
EcoT38I GRGCYC 2 cut(s) 128, 532
FaiI YATR 3 cut(s) 122, 194, 474
Fnu4HI GCNGC 9 cut(s) 61, 64, 227, 276, 394, 397, 415, 494, 497
FokI GGATG 2 cut(s) 529, 586
FriOI GRGCYC 2 cut(s) 128, 532
Fsp4HI GCNGC 9 cut(s) 61, 64, 227, 276, 394, 397, 415, 494, 497
FspBI CTAG 3 cut(s) 519, 569, 604
GluI GCNGC 9 cut(s) 61, 64, 227, 276, 394, 397, 415, 494, 497
GsaI CCCAGC 1 cut(s) 403
HaeIII GGCC 8 cut(s) 78, 85, 90, 139, 393, 434, 530, 583
HapII CCGG 3 cut(s) 52, 91, 435
HgaI GACGC 3 cut(s) 13, 87, 240
Hin1I GRCGYC 1 cut(s) 251
HindIII AAGCTT 1 cut(s) 22
HpaII CCGG 3 cut(s) 52, 91, 435
HphI GGTGA 2 cut(s) 155, 211
Hpy166II GTNNAC 2 cut(s) 221, 554
Hpy188I TCNGA 6 cut(s) 113, 150, 241, 260, 443, 547
Hpy8I GTNNAC 2 cut(s) 221, 554
Hpy99I CGWCG 4 cut(s) 256, 299, 430, 453
HpyAV CCTTC 1 cut(s) 472
HpyCH4III ACNGT 4 cut(s) 245, 299, 314, 430
HpyCH4V TGCA 4 cut(s) 206, 221, 275, 496
HpyF10VI GCNNNNNNNGC 6 cut(s) 69, 91, 104, 203, 275, 536
HpyF3I CTNAG 2 cut(s) 127, 563
Hsp92I GRCGYC 1 cut(s) 251
KroI GCCGGC 1 cut(s) 90
KroNI GCCGGC 1 cut(s) 92
Kzo9I GATC 3 cut(s) 145, 463, 515
LmnI GCTCC 2 cut(s) 150, 456
Lsp1109I GCAGC 6 cut(s) 47, 238, 287, 383, 480, 508
MaeI CTAG 3 cut(s) 519, 569, 604
MaeIII GTNAC 2 cut(s) 199, 521
MalI GATC 3 cut(s) 147, 465, 517
MboI GATC 3 cut(s) 145, 463, 515
MboII GAAGA 3 cut(s) 25, 27, 588
MfeI CAATTG 1 cut(s) 500
MflI RGATCY 1 cut(s) 515
MhlI GDGCHC 5 cut(s) 128, 155, 223, 360, 532
MluCI AATT 2 cut(s) 324, 500
MmeI TCCRAC 3 cut(s) 91, 160, 264
MnlI CCTC 8 cut(s) 9, 89, 206, 283, 379, 382, 542, 550
MroNI GCCGGC 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 396
MspI CCGG 3 cut(s) 52, 91, 435
MspR9I CCNGG 4 cut(s) 87, 141, 436, 585
MunI CAATTG 1 cut(s) 500
MvaI CCWGG 3 cut(s) 87, 141, 585
MwoI GCNNNNNNNGC 6 cut(s) 69, 91, 104, 203, 275, 536
NaeI GCCGGC 1 cut(s) 92
NciI CCSGG 1 cut(s) 436
NdeII GATC 3 cut(s) 145, 463, 515
NgoMIV GCCGGC 1 cut(s) 90
NlaIV GGNNCC 2 cut(s) 440, 530
NmuCI GTSAC 1 cut(s) 199
PaeR7I CTCGAG 1 cut(s) 361
PceI AGGCCT 2 cut(s) 78, 139
PdiI GCCGGC 1 cut(s) 92
PflMI CCANNNNNTGG 1 cut(s) 329
PkrI GCNGC 9 cut(s) 62, 65, 228, 277, 395, 398, 416, 495, 498
Psp6I CCWGG 3 cut(s) 85, 139, 583
PspFI CCCAGC 1 cut(s) 399
PspGI CCWGG 3 cut(s) 85, 139, 583
PspN4I GGNNCC 2 cut(s) 440, 530
PspOMI GGGCCC 1 cut(s) 528
PspPI GGNCC 7 cut(s) 168, 391, 439, 528, 529, 554, 581
PspXI VCTCGAGB 1 cut(s) 361
PstI CTGCAG 1 cut(s) 498
PsuI RGATCY 1 cut(s) 515
SatI GCNGC 9 cut(s) 61, 64, 227, 276, 394, 397, 415, 494, 497
Sau3AI GATC 3 cut(s) 145, 463, 515
Sau96I GGNCC 7 cut(s) 168, 391, 439, 528, 529, 554, 581
ScrFI CCNGG 4 cut(s) 87, 141, 436, 585
SduI GDGCHC 5 cut(s) 128, 155, 223, 360, 532
SetI ASST 3 cut(s) 26, 483, 559
SfcI CTRYAG 1 cut(s) 494
Sfr274I CTCGAG 1 cut(s) 361
SinI GGWCC 3 cut(s) 168, 439, 554
SlaI CTCGAG 1 cut(s) 361
SmlI CTYRAG 1 cut(s) 361
SmoI CTYRAG 1 cut(s) 361
Sse9I AATT 2 cut(s) 324, 500
SseBI AGGCCT 2 cut(s) 78, 139
SsiI CCGC 7 cut(s) 63, 107, 160, 197, 394, 414, 454
SspMI CTAG 3 cut(s) 519, 569, 604
StuI AGGCCT 2 cut(s) 78, 139
StyD4I CCNGG 4 cut(s) 85, 139, 434, 583
TaaI ACNGT 4 cut(s) 245, 299, 314, 430
TaqI TCGA 3 cut(s) 362, 384, 425
TaqII GACCGA 1 cut(s) 244
TasI AATT 2 cut(s) 324, 500
TauI GCSGC 3 cut(s) 66, 396, 417
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 6 cut(s) 60, 226, 275, 396, 493, 496
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 2 cut(s) 582, 588
TspRI CASTG 1 cut(s) 319
Van91I CCANNNNNTGG 1 cut(s) 329
VneI GTGCAC 1 cut(s) 219
VpaK11BI GGWCC 3 cut(s) 168, 439, 554
XhoI CTCGAG 1 cut(s) 361
XspI CTAG 3 cut(s) 519, 569, 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.