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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g41860 FvH4_5g17340 |
| rosa_chinensis | RchiOBHm_Chr4g0389261 RchiOBHm_Chr5g0075701 |
| rosa_multiflora | Rmu_sc0002398.1_g000004 Rmu_sc0003175.1_g000007 Rmu_sc0007018.1_g000001 Rmu_sc0012670.1_g000004 |
| rosa_roxburghii | Rroxscaffold_2G00133960 |
| rosa_rugosa | Rorug03G0366900.1 Rorug04G0064600 Rorug05G0442200 |
| rosa_samantha | Rh5AG498600 Rh5AG498700 Rh5AG501200 Rh5BG519800 Rh5CG543800 Rh5DG529700 |
| rosa_wichuraiana | Rw5G046280 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 115, 558 |
| AccII | CGCG | 2 cut(s) | 108, 458 |
| AciI | CCGC | 6 cut(s) | 106, 113, 157, 215, 505, 511 |
| AclWI | GGATC | 1 cut(s) | 580 |
| AcoI | YGGCCR | 1 cut(s) | 103 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 112, 211, 470 |
| AgsI | TTSAA | 1 cut(s) | 526 |
| AluBI | AGCT | 2 cut(s) | 67, 284 |
| AluI | AGCT | 2 cut(s) | 67, 284 |
| Alw21I | GWGCWC | 1 cut(s) | 241 |
| Alw26I | GTCTC | 3 cut(s) | 133, 311, 397 |
| AlwI | GGATC | 1 cut(s) | 580 |
| AoxI | GGCC | 1 cut(s) | 103 |
| ApeKI | GCWGC | 3 cut(s) | 329, 450, 453 |
| AspLEI | GCGC | 4 cut(s) | 118, 124, 417, 458 |
| AspS9I | GGNCC | 1 cut(s) | 547 |
| AvaII | GGWCC | 1 cut(s) | 547 |
| BanII | GRGCYC | 1 cut(s) | 499 |
| BbsI | GAAGAC | 2 cut(s) | 19, 368 |
| Bbv12I | GWGCWC | 1 cut(s) | 241 |
| BbvI | GCAGC | 3 cut(s) | 341, 437, 440 |
| BccI | CCATC | 2 cut(s) | 25, 529 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 335, 369 |
| BcoDI | GTCTC | 3 cut(s) | 133, 311, 397 |
| BfaI | CTAG | 3 cut(s) | 53, 87, 281 |
| BfoI | RGCGCY | 2 cut(s) | 119, 418 |
| BfuAI | ACCTGC | 2 cut(s) | 115, 558 |
| BisI | GCNGC | 5 cut(s) | 106, 114, 330, 451, 454 |
| BlsI | GCNGC | 5 cut(s) | 107, 115, 331, 452, 455 |
| Bme18I | GGWCC | 1 cut(s) | 547 |
| BmgT120I | GGNCC | 1 cut(s) | 547 |
| BmsI | GCATC | 1 cut(s) | 100 |
| BpiI | GAAGAC | 2 cut(s) | 19, 368 |
| BsaI | GGTCTC | 2 cut(s) | 133, 311 |
| BsaWI | WCCGGW | 1 cut(s) | 97 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 112, 211, 470 |
| Bse118I | RCCGGY | 1 cut(s) | 365 |
| Bse1I | ACTGG | 1 cut(s) | 472 |
| Bse3DI | GCAATG | 1 cut(s) | 376 |
| BseGI | GGATG | 1 cut(s) | 540 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 112, 211, 470 |
| BseMI | GCAATG | 1 cut(s) | 376 |
| BseNI | ACTGG | 1 cut(s) | 472 |
| BseRI | GAGGAG | 1 cut(s) | 249 |
| BseX3I | CGGCCG | 1 cut(s) | 103 |
| BseXI | GCAGC | 3 cut(s) | 341, 437, 440 |
| BsgI | GTGCAG | 1 cut(s) | 348 |
| Bsh1236I | CGCG | 2 cut(s) | 108, 458 |
| Bsh1285I | CGRYCG | 4 cut(s) | 102, 106, 161, 273 |
| BshFI | GGCC | 1 cut(s) | 105 |
| BsiEI | CGRYCG | 4 cut(s) | 102, 106, 161, 273 |
| BsiHKAI | GWGCWC | 1 cut(s) | 241 |
| BsiSI | CCGG | 2 cut(s) | 98, 366 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 112, 211, 470 |
| BsmAI | GTCTC | 3 cut(s) | 133, 311, 397 |
| BsnI | GGCC | 1 cut(s) | 105 |
| Bso31I | GGTCTC | 2 cut(s) | 133, 311 |
| Bsp1286I | GDGCHC | 2 cut(s) | 241, 499 |
| Bsp143I | GATC | 1 cut(s) | 572 |
| BspACI | CCGC | 6 cut(s) | 106, 113, 157, 215, 505, 511 |
| BspANI | GGCC | 1 cut(s) | 105 |
| BspFNI | CGCG | 2 cut(s) | 108, 458 |
| BspMI | ACCTGC | 2 cut(s) | 115, 558 |
| BspPI | GGATC | 1 cut(s) | 580 |
| BspTNI | GGTCTC | 2 cut(s) | 133, 311 |
| BsrDI | GCAATG | 1 cut(s) | 376 |
| BsrFI | RCCGGY | 1 cut(s) | 365 |
| BsrI | ACTGG | 1 cut(s) | 472 |
| BssAI | RCCGGY | 1 cut(s) | 365 |
| BssMI | GATC | 1 cut(s) | 572 |
| Bst4CI | ACNGT | 1 cut(s) | 32 |
| Bst6I | CTCTTC | 2 cut(s) | 226, 314 |
| BstC8I | GCNNGC | 2 cut(s) | 120, 146 |
| BstDEI | CTNAG | 1 cut(s) | 576 |
| BstF5I | GGATG | 1 cut(s) | 540 |
| BstFNI | CGCG | 2 cut(s) | 108, 458 |
| BstH2I | RGCGCY | 2 cut(s) | 119, 418 |
| BstHHI | GCGC | 4 cut(s) | 118, 124, 417, 458 |
| BstKTI | GATC | 1 cut(s) | 575 |
| BstMAI | GTCTC | 3 cut(s) | 133, 311, 397 |
| BstMBI | GATC | 1 cut(s) | 572 |
| BstMCI | CGRYCG | 4 cut(s) | 102, 106, 161, 273 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 119, 154, 221 |
| BstUI | CGCG | 2 cut(s) | 108, 458 |
| BstV1I | GCAGC | 3 cut(s) | 341, 437, 440 |
| BstV2I | GAAGAC | 2 cut(s) | 19, 368 |
| BstX2I | RGATCY | 1 cut(s) | 572 |
| BstYI | RGATCY | 1 cut(s) | 572 |
| BstZI | CGGCCG | 1 cut(s) | 103 |
| BsuRI | GGCC | 1 cut(s) | 105 |
| BtgZI | GCGATG | 1 cut(s) | 123 |
| BtsCI | GGATG | 1 cut(s) | 540 |
| BveI | ACCTGC | 2 cut(s) | 115, 558 |
| Cac8I | GCNNGC | 2 cut(s) | 120, 146 |
| CfoI | GCGC | 4 cut(s) | 118, 124, 417, 458 |
| Cfr10I | RCCGGY | 1 cut(s) | 365 |
| Cfr13I | GGNCC | 1 cut(s) | 547 |
| CseI | GACGC | 1 cut(s) | 137 |
| CviAII | CATG | 2 cut(s) | 152, 190 |
| CviJI | RGCY | 7 cut(s) | 67, 105, 258, 284, 476, 497, 569 |
| CviKI_1 | RGCY | 7 cut(s) | 67, 105, 258, 284, 476, 497, 569 |
| DdeI | CTNAG | 1 cut(s) | 576 |
| DpnI | GATC | 1 cut(s) | 574 |
| DpnII | GATC | 1 cut(s) | 572 |
| EaeI | YGGCCR | 1 cut(s) | 103 |
| EagI | CGGCCG | 1 cut(s) | 103 |
| Eam1104I | CTCTTC | 2 cut(s) | 226, 314 |
| EarI | CTCTTC | 2 cut(s) | 226, 314 |
| EciI | GGCGGA | 1 cut(s) | 526 |
| EclXI | CGGCCG | 1 cut(s) | 103 |
| Eco24I | GRGCYC | 1 cut(s) | 499 |
| Eco31I | GGTCTC | 2 cut(s) | 133, 311 |
| Eco47I | GGWCC | 1 cut(s) | 547 |
| Eco52I | CGGCCG | 1 cut(s) | 103 |
| EcoO109I | RGGNCCY | 1 cut(s) | 547 |
| EcoT38I | GRGCYC | 1 cut(s) | 499 |
| FaeI | CATG | 2 cut(s) | 155, 193 |
| FaiI | YATR | 7 cut(s) | 38, 153, 191, 255, 350, 409, 555 |
| FatI | CATG | 2 cut(s) | 151, 189 |
| Fnu4HI | GCNGC | 5 cut(s) | 106, 114, 330, 451, 454 |
| FokI | GGATG | 1 cut(s) | 547 |
| FriOI | GRGCYC | 1 cut(s) | 499 |
| Fsp4HI | GCNGC | 5 cut(s) | 106, 114, 330, 451, 454 |
| FspBI | CTAG | 3 cut(s) | 53, 87, 281 |
| GlaI | GCGC | 4 cut(s) | 117, 123, 416, 457 |
| GluI | GCNGC | 5 cut(s) | 106, 114, 330, 451, 454 |
| HaeII | RGCGCY | 2 cut(s) | 119, 418 |
| HaeIII | GGCC | 1 cut(s) | 105 |
| HapII | CCGG | 2 cut(s) | 98, 366 |
| HgaI | GACGC | 1 cut(s) | 137 |
| HhaI | GCGC | 4 cut(s) | 118, 124, 417, 458 |
| Hin1II | CATG | 2 cut(s) | 155, 193 |
| Hin6I | GCGC | 4 cut(s) | 116, 122, 415, 456 |
| HinP1I | GCGC | 4 cut(s) | 116, 122, 415, 456 |
| HindIII | AAGCTT | 1 cut(s) | 65 |
| HinfI | GANTC | 3 cut(s) | 201, 277, 460 |
| HpaII | CCGG | 2 cut(s) | 98, 366 |
| Hpy166II | GTNNAC | 1 cut(s) | 343 |
| Hpy188I | TCNGA | 3 cut(s) | 133, 163, 318 |
| Hpy188III | TCNNGA | 1 cut(s) | 274 |
| Hpy8I | GTNNAC | 1 cut(s) | 343 |
| Hpy99I | CGWCG | 1 cut(s) | 143 |
| HpyAV | CCTTC | 1 cut(s) | 241 |
| HpyCH4III | ACNGT | 1 cut(s) | 32 |
| HpyCH4V | TGCA | 3 cut(s) | 224, 329, 553 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 119, 154, 221 |
| HpyF3I | CTNAG | 1 cut(s) | 576 |
| Hsp92II | CATG | 2 cut(s) | 155, 193 |
| HspAI | GCGC | 4 cut(s) | 116, 122, 415, 456 |
| Kzo9I | GATC | 1 cut(s) | 572 |
| LmnI | GCTCC | 1 cut(s) | 236 |
| LpnPI | CCDG | 7 cut(s) | 104, 110, 111, 379, 453, 555, 563 |
| Lsp1109I | GCAGC | 3 cut(s) | 341, 437, 440 |
| LweI | GCATC | 1 cut(s) | 100 |
| MaeI | CTAG | 3 cut(s) | 53, 87, 281 |
| MaeIII | GTNAC | 2 cut(s) | 32, 538 |
| MalI | GATC | 1 cut(s) | 574 |
| MboI | GATC | 1 cut(s) | 572 |
| MboII | GAAGA | 4 cut(s) | 24, 243, 331, 373 |
| MflI | RGATCY | 1 cut(s) | 572 |
| MhlI | GDGCHC | 2 cut(s) | 241, 499 |
| MluCI | AATT | 3 cut(s) | 206, 381, 580 |
| MmeI | TCCRAC | 3 cut(s) | 39, 141, 156 |
| MnlI | CCTC | 6 cut(s) | 146, 227, 315, 430, 436, 538 |
| MspA1I | CMGCKG | 1 cut(s) | 505 |
| MspI | CCGG | 2 cut(s) | 98, 366 |
| MvnI | CGCG | 2 cut(s) | 108, 458 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 119, 154, 221 |
| NdeII | GATC | 1 cut(s) | 572 |
| NlaIII | CATG | 2 cut(s) | 155, 193 |
| PfeI | GAWTC | 3 cut(s) | 201, 277, 460 |
| PflFI | GACNNNGTC | 1 cut(s) | 137 |
| PkrI | GCNGC | 5 cut(s) | 107, 115, 331, 452, 455 |
| PpuMI | RGGWCCY | 1 cut(s) | 547 |
| Psp5II | RGGWCCY | 1 cut(s) | 547 |
| PspPI | GGNCC | 1 cut(s) | 547 |
| PspPPI | RGGWCCY | 1 cut(s) | 547 |
| PsuI | RGATCY | 1 cut(s) | 572 |
| PsyI | GACNNNGTC | 1 cut(s) | 137 |
| SatI | GCNGC | 5 cut(s) | 106, 114, 330, 451, 454 |
| Sau3AI | GATC | 1 cut(s) | 572 |
| Sau96I | GGNCC | 1 cut(s) | 547 |
| SduI | GDGCHC | 2 cut(s) | 241, 499 |
| SetI | ASST | 7 cut(s) | 69, 129, 138, 286, 326, 441, 552 |
| SfaNI | GCATC | 1 cut(s) | 100 |
| SinI | GGWCC | 1 cut(s) | 547 |
| Sse9I | AATT | 3 cut(s) | 206, 381, 580 |
| SsiI | CCGC | 6 cut(s) | 106, 113, 157, 215, 505, 511 |
| SspMI | CTAG | 3 cut(s) | 53, 87, 281 |
| TaaI | ACNGT | 1 cut(s) | 32 |
| TaqI | TCGA | 1 cut(s) | 273 |
| TaqII | GACCGA | 1 cut(s) | 259 |
| TasI | AATT | 3 cut(s) | 206, 381, 580 |
| TauI | GCSGC | 2 cut(s) | 108, 116 |
| TfiI | GAWTC | 3 cut(s) | 201, 277, 460 |
| TseI | GCWGC | 3 cut(s) | 329, 450, 453 |
| TspDTI | ATGAA | 1 cut(s) | 471 |
| TspGWI | ACGGA | 1 cut(s) | 557 |
| Tth111I | GACNNNGTC | 1 cut(s) | 137 |
| VpaK11BI | GGWCC | 1 cut(s) | 547 |
| XspI | CTAG | 3 cut(s) | 53, 87, 281 |