Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0012601

Physical Location & Seq

Genomic Coordinates Forward (+)

84544116 .. 84556020

Gene Structure 11905 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG498700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCATGAAGGTATTGTGATGAGAAAGTATGGTGCGGACTATCTATACTTATTGAATTATTGGTTCCTTGACAGGAGTGAGAAGAATAATGAAATTCGGTCAATGAGCCATGCCATGGTTTTGAATAATCTCCCAACCCTCAAATTGAGCTCTCACTCCACTTTCACCTCTAGCCGGAACTCCCATGGTTTAGCTCGCCTCTCTTCAAATACGTCGTCGTTTTGCTGGACCAGCCTCCCATACCAGAGCTCCATCGATTTCAAGGAGCTGGTCCGAATTGAATGCCACAAAGAAGAGAAGCCGGTTTTGAGTGGCCGGTATAAGATTGAGAAGTGGGAGCCCTTGAATTTAGGTTTATGGGAAAAGGAGGATGCAAATTTTTTTTCGGTGATGTTTTACGATGAAACTTTAGTTTCAGTTCCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1

Protein Analysis

142

Amino Acids

16.64

Weight (kDa)

6.21

Isoelectric Point (pI)

58.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41860 FvH4_5g17340
rosa_chinensis	RchiOBHm_Chr4g0389261 RchiOBHm_Chr5g0075701
rosa_multiflora	Rmu_sc0002398.1_g000004 Rmu_sc0003175.1_g000007 Rmu_sc0007018.1_g000001 Rmu_sc0012670.1_g000004
rosa_roxburghii	Rroxscaffold_2G00133960
rosa_rugosa	Rorug03G0366900.1 Rorug04G0064600 Rorug05G0442200
rosa_samantha	Rh5AG498600 Rh5AG498700 Rh5AG501200 Rh5BG519800 Rh5CG543800 Rh5DG529700
rosa_wichuraiana	Rw5G046280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	115
AciI	CCGC	1 cut(s)	35
AcoI	YGGCCR	1 cut(s)	313
AcsI	RAATTY	3 cut(s)	93, 346, 376
AfiI	CCNNNNNNNGG	2 cut(s)	115, 174
AgsI	TTSAA	6 cut(s)	55, 124, 207, 262, 281, 346
AluBI	AGCT	4 cut(s)	150, 194, 249, 268
AluI	AGCT	4 cut(s)	150, 194, 249, 268
Alw21I	GWGCWC	2 cut(s)	152, 251
AlwNI	CAGNNNCTG	1 cut(s)	422
AoxI	GGCC	1 cut(s)	313
ApoI	RAATTY	3 cut(s)	93, 346, 376
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
AspS9I	GGNCC	2 cut(s)	228, 271
AsuHPI	GGTGA	2 cut(s)	157, 400
AvaII	GGWCC	2 cut(s)	228, 271
BanII	GRGCYC	3 cut(s)	152, 251, 342
Bbv12I	GWGCWC	2 cut(s)	152, 251
BccI	CCATC	1 cut(s)	260
BcgI	CGANNNNNNTGC	2 cut(s)	264, 298
BfaI	CTAG	1 cut(s)	171
Bme18I	GGWCC	2 cut(s)	228, 271
BmgT120I	GGNCC	2 cut(s)	228, 271
BmiI	GGNNCC	2 cut(s)	65, 339
BmsI	GCATC	1 cut(s)	361
Bsa29I	ATCGAT	1 cut(s)	255
BsaJI	CCNNGG	2 cut(s)	114, 184
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 174
Bse118I	RCCGGY	2 cut(s)	301, 315
BseCI	ATCGAT	1 cut(s)	255
BseDI	CCNNGG	2 cut(s)	114, 184
BseGI	GGATG	1 cut(s)	376
BseLI	CCNNNNNNNGG	2 cut(s)	115, 174
BshFI	GGCC	1 cut(s)	315
BshVI	ATCGAT	1 cut(s)	255
BsiHKAI	GWGCWC	2 cut(s)	152, 251
BsiSI	CCGG	3 cut(s)	175, 302, 316
BslI	CCNNNNNNNGG	2 cut(s)	115, 174
BsmI	GAATGC	1 cut(s)	287
BsnI	GGCC	1 cut(s)	315
Bsp1286I	GDGCHC	3 cut(s)	152, 251, 342
Bsp19I	CCATGG	2 cut(s)	114, 184
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	1 cut(s)	315
BspDI	ATCGAT	1 cut(s)	255
BspLI	GGNNCC	2 cut(s)	65, 339
BsrFI	RCCGGY	2 cut(s)	301, 315
BssAI	RCCGGY	2 cut(s)	301, 315
BssECI	CCNNGG	2 cut(s)	114, 184
BssT1I	CCWWGG	2 cut(s)	114, 184
Bst6I	CTCTTC	2 cut(s)	208, 288
BstC8I	GCNNGC	1 cut(s)	196
BstDSI	CCRYGG	2 cut(s)	114, 184
BstF5I	GGATG	1 cut(s)	376
BstMWI	GCNNNNNNNGC	1 cut(s)	231
Bsu15I	ATCGAT	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	315
BsuTUI	ATCGAT	1 cut(s)	255
BtgI	CCRYGG	2 cut(s)	114, 184
BtsCI	GGATG	1 cut(s)	376
Cac8I	GCNNGC	1 cut(s)	196
CaiI	CAGNNNCTG	1 cut(s)	422
Cfr10I	RCCGGY	2 cut(s)	301, 315
Cfr13I	GGNCC	2 cut(s)	228, 271
ClaI	ATCGAT	1 cut(s)	255
CviAII	CATG	4 cut(s)	5, 110, 115, 185
EaeI	YGGCCR	1 cut(s)	313
Eam1104I	CTCTTC	2 cut(s)	208, 288
EarI	CTCTTC	2 cut(s)	208, 288
Ecl136II	GAGCTC	2 cut(s)	150, 249
Eco130I	CCWWGG	2 cut(s)	114, 184
Eco24I	GRGCYC	3 cut(s)	152, 251, 342
Eco47I	GGWCC	2 cut(s)	228, 271
Eco53kI	GAGCTC	2 cut(s)	150, 249
EcoICRI	GAGCTC	2 cut(s)	150, 249
EcoT14I	CCWWGG	2 cut(s)	114, 184
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	3 cut(s)	152, 251, 342
ErhI	CCWWGG	2 cut(s)	114, 184
FaeI	CATG	4 cut(s)	8, 113, 118, 188
FaiI	YATR	9 cut(s)	6, 30, 46, 111, 116, 186, 241, 321, 358
FatI	CATG	4 cut(s)	4, 109, 114, 184
FokI	GGATG	1 cut(s)	383
FriOI	GRGCYC	3 cut(s)	152, 251, 342
FspBI	CTAG	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	315
HapII	CCGG	3 cut(s)	175, 302, 316
Hin1II	CATG	4 cut(s)	8, 113, 118, 188
HpaII	CCGG	3 cut(s)	175, 302, 316
HphI	GGTGA	2 cut(s)	157, 400
Hpy188I	TCNGA	1 cut(s)	275
Hpy188III	TCNNGA	1 cut(s)	422
Hpy99I	CGWCG	2 cut(s)	217, 220
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	2 cut(s)	4, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	4 cut(s)	8, 113, 118, 188
LmnI	GCTCC	3 cut(s)	254, 265, 337
LpnPI	CCDG	8 cut(s)	58, 188, 211, 244, 254, 257, 315, 329
LweI	GCATC	1 cut(s)	361
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	1 cut(s)	212
MboII	GAAGA	3 cut(s)	94, 195, 305
MhlI	GDGCHC	3 cut(s)	152, 251, 342
MluCI	AATT	6 cut(s)	55, 93, 143, 276, 346, 376
MnlI	CCTC	5 cut(s)	149, 178, 209, 245, 361
Mph1103I	ATGCAT	1 cut(s)	6
MspI	CCGG	3 cut(s)	175, 302, 316
Mva1269I	GAATGC	1 cut(s)	287
MwoI	GCNNNNNNNGC	1 cut(s)	231
NcoI	CCATGG	2 cut(s)	114, 184
NlaIII	CATG	4 cut(s)	8, 113, 118, 188
NlaIV	GGNNCC	2 cut(s)	65, 339
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	1 cut(s)	287
PflMI	CCANNNNNTGG	1 cut(s)	115
Psp124BI	GAGCTC	2 cut(s)	152, 251
PspN4I	GGNNCC	2 cut(s)	65, 339
PspPI	GGNCC	2 cut(s)	228, 271
PstNI	CAGNNNCTG	1 cut(s)	422
SacI	GAGCTC	2 cut(s)	152, 251
Sau96I	GGNCC	2 cut(s)	228, 271
SduI	GDGCHC	3 cut(s)	152, 251, 342
SetI	ASST	8 cut(s)	13, 152, 170, 196, 215, 251, 270, 355
SfaNI	GCATC	1 cut(s)	361
SinI	GGWCC	2 cut(s)	228, 271
Sse9I	AATT	6 cut(s)	55, 93, 143, 276, 346, 376
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	1 cut(s)	171
SstI	GAGCTC	2 cut(s)	152, 251
StyI	CCWWGG	2 cut(s)	114, 184
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	1 cut(s)	255
TaqII	GACCGA	1 cut(s)	87
TasI	AATT	6 cut(s)	55, 93, 143, 276, 346, 376
TspDTI	ATGAA	3 cut(s)	21, 105, 417
Van91I	CCANNNNNTGG	1 cut(s)	115
VpaK11BI	GGWCC	2 cut(s)	228, 271
XapI	RAATTY	3 cut(s)	93, 346, 376
XspI	CTAG	1 cut(s)	171
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.