Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012601

Physical Location & Seq

Genomic Coordinates Forward (+)

71462275 .. 71463399

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00133960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTCGACGGAGCACTTCCCGGAGGACATTATCATAGTGCATATCCTCACCAGGTTACCGATCAAATCTCTTATCCAATTCCGATGCGTCTCAAAACGCTGGCGTTCTATGCTCTTCGATCAGCAATTCTCCAAATCGCAACTCAAGTTCGCTTCCGAGAGTAAAACGCTGAGTCGCAGACTCCTCATCTTCACATCCTCTAAACTACTTGCAGATGTTGAAACGGCGTTGTTTGCGGAGCTTTCTGGCAGAAAGCTGACCTGCCCATTCTGGCAACCAGGGAGTCCTCGAATCTTCATGCTGGTCTCCTGCAATGGCATGCTATGTGTAGCTCTTCATGCTATGAATATTGTATATGGAACCCATCCACTGCATTCTTCCTCAAATTGCCCAGCCCTAATTTTGCCTCAGAATCAAAGCCCGATGTGTGTCCTCACTATGCCTTGGTCCATGGACCATGTCGATGGATTTCATCGACCCGTCATCCATACGGAAAGTGGCATAGTTTTGAGATCATATCACAGGGACAAGGAGAACGAGCTGATGAGGGCGGATGTTGTGGCTGGTTGTGATCGATATAGGATTGAGATGGGTTCATTAATTGTGATGGAGTATGAAGAGACTCTACGTACTCTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

213

Amino Acids

24.37

Weight (kDa)

8.5

Isoelectric Point (pI)

54.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	7 - 42	2.9e-08	F-box domain
F-box-like	PF12937	11 - 42	3.9e-06	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41860 FvH4_5g17340
rosa_chinensis	RchiOBHm_Chr4g0389261 RchiOBHm_Chr5g0075701
rosa_multiflora	Rmu_sc0002398.1_g000004 Rmu_sc0003175.1_g000007 Rmu_sc0007018.1_g000001 Rmu_sc0012670.1_g000004
rosa_roxburghii	Rroxscaffold_2G00133960
rosa_rugosa	Rorug03G0366900.1 Rorug04G0064600 Rorug05G0442200
rosa_samantha	Rh5AG498600 Rh5AG498700 Rh5AG501200 Rh5BG519800 Rh5CG543800 Rh5DG529700
rosa_wichuraiana	Rw5G046280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	269
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	2 cut(s)	236, 551
AfaI	GTAC	1 cut(s)	631
AgsI	TTSAA	1 cut(s)	221
AjnI	CCWGG	2 cut(s)	50, 277
AluBI	AGCT	4 cut(s)	241, 256, 332, 541
AluI	AGCT	4 cut(s)	241, 256, 332, 541
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	3 cut(s)	94, 310, 614
AseI	ATTAAT	1 cut(s)	599
AspS9I	GGNCC	2 cut(s)	447, 454
AsuC2I	CCSGG	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	40
AvaII	GGWCC	2 cut(s)	447, 454
BarI	GAAGNNNNNNTAC	2 cut(s)	609, 641
Bbv12I	GWGCWC	1 cut(s)	15
BccI	CCATC	4 cut(s)	372, 458, 583, 601
BceAI	ACGGC	1 cut(s)	240
BciT130I	CCWGG	2 cut(s)	52, 279
BcnI	CCSGG	1 cut(s)	20
BcoDI	GTCTC	3 cut(s)	94, 310, 614
BfuAI	ACCTGC	1 cut(s)	269
Bme1390I	CCNGG	3 cut(s)	20, 52, 279
Bme18I	GGWCC	2 cut(s)	447, 454
BmgT120I	GGNCC	2 cut(s)	447, 454
BmiI	GGNNCC	1 cut(s)	361
BmrFI	CCNGG	3 cut(s)	20, 52, 279
BmsI	GCATC	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	20
Bsa29I	ATCGAT	1 cut(s)	574
BsaAI	YACGTR	1 cut(s)	629
BsaI	GGTCTC	1 cut(s)	310
BsaJI	CCNNGG	3 cut(s)	278, 443, 450
Bse3DI	GCAATG	1 cut(s)	319
BseBI	CCWGG	2 cut(s)	52, 279
BseCI	ATCGAT	1 cut(s)	574
BseDI	CCNNGG	3 cut(s)	278, 443, 450
BseGI	GGATG	4 cut(s)	194, 364, 483, 559
BseMI	GCAATG	1 cut(s)	319
BseMII	CTCAG	2 cut(s)	161, 422
BseRI	GAGGAG	1 cut(s)	173
BseYI	CCCAGC	1 cut(s)	391
BshVI	ATCGAT	1 cut(s)	574
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	539
BsmAI	GTCTC	3 cut(s)	94, 310, 614
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	539
BsmI	GAATGC	1 cut(s)	373
Bso31I	GGTCTC	1 cut(s)	310
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	4 cut(s)	60, 118, 512, 571
Bsp19I	CCATGG	1 cut(s)	450
BspACI	CCGC	2 cut(s)	236, 551
BspCNI	CTCAG	2 cut(s)	162, 421
BspDI	ATCGAT	1 cut(s)	574
BspLI	GGNNCC	1 cut(s)	361
BspMI	ACCTGC	1 cut(s)	269
BspQI	GCTCTTC	2 cut(s)	119, 339
BspTNI	GGTCTC	1 cut(s)	310
BsrDI	GCAATG	1 cut(s)	319
BssECI	CCNNGG	3 cut(s)	278, 443, 450
BssMI	GATC	4 cut(s)	60, 118, 512, 571
BssT1I	CCWWGG	2 cut(s)	443, 450
Bst2UI	CCWGG	2 cut(s)	52, 279
Bst6I	CTCTTC	3 cut(s)	119, 339, 612
BstBAI	YACGTR	1 cut(s)	629
BstC8I	GCNNGC	2 cut(s)	101, 320
BstDEI	CTNAG	2 cut(s)	170, 408
BstDSI	CCRYGG	1 cut(s)	450
BstEII	GGTNACC	1 cut(s)	54
BstF5I	GGATG	4 cut(s)	194, 364, 483, 559
BstKTI	GATC	4 cut(s)	63, 121, 515, 574
BstMAI	GTCTC	3 cut(s)	94, 310, 614
BstMBI	GATC	4 cut(s)	60, 118, 512, 571
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 233, 338
BstNI	CCWGG	2 cut(s)	52, 279
BstNSI	RCATGY	1 cut(s)	322
BstPI	GGTNACC	1 cut(s)	54
BstSCI	CCNGG	3 cut(s)	18, 50, 277
BstSNI	TACGTA	1 cut(s)	629
BstXI	CCANNNNNNTGG	1 cut(s)	464
Bsu15I	ATCGAT	1 cut(s)	574
BsuTUI	ATCGAT	1 cut(s)	574
BtgI	CCRYGG	1 cut(s)	450
BtsCI	GGATG	4 cut(s)	194, 364, 483, 559
BtsI	GCAGTG	1 cut(s)	368
BtsIMutI	CAGTG	1 cut(s)	368
BveI	ACCTGC	1 cut(s)	269
Cac8I	GCNNGC	2 cut(s)	101, 320
Cfr13I	GGNCC	2 cut(s)	447, 454
ClaI	ATCGAT	1 cut(s)	574
CseI	GACGC	1 cut(s)	76
CsiI	ACCWGGT	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	630
CviAII	CATG	5 cut(s)	298, 319, 338, 451, 458
CviJI	RGCY	8 cut(s)	241, 256, 332, 395, 420, 541, 563, 638
CviKI_1	RGCY	8 cut(s)	241, 256, 332, 395, 420, 541, 563, 638
CviQI	GTAC	1 cut(s)	630
DdeI	CTNAG	2 cut(s)	170, 408
DpnI	GATC	4 cut(s)	62, 120, 514, 573
DpnII	GATC	4 cut(s)	60, 118, 512, 571
Eam1104I	CTCTTC	3 cut(s)	119, 339, 612
EarI	CTCTTC	3 cut(s)	119, 339, 612
EciI	GGCGGA	1 cut(s)	566
Eco105I	TACGTA	1 cut(s)	629
Eco130I	CCWWGG	2 cut(s)	443, 450
Eco31I	GGTCTC	1 cut(s)	310
Eco47I	GGWCC	2 cut(s)	447, 454
Eco91I	GGTNACC	1 cut(s)	54
EcoO65I	GGTNACC	1 cut(s)	54
EcoRII	CCWGG	2 cut(s)	50, 277
EcoT14I	CCWWGG	2 cut(s)	443, 450
ErhI	CCWWGG	2 cut(s)	443, 450
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	5 cut(s)	301, 322, 341, 454, 461
FaqI	GGGAC	1 cut(s)	539
FatI	CATG	5 cut(s)	297, 318, 337, 450, 457
FblI	GTMKAC	1 cut(s)	5
FokI	GGATG	4 cut(s)	181, 351, 470, 566
GsaI	CCCAGC	1 cut(s)	395
HapII	CCGG	1 cut(s)	20
HgaI	GACGC	1 cut(s)	76
Hin1II	CATG	5 cut(s)	301, 322, 341, 454, 461
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	6 cut(s)	172, 180, 283, 291, 412, 622
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	3 cut(s)	83, 157, 411
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4IV	ACGT	1 cut(s)	628
HpyCH4V	TGCA	4 cut(s)	40, 212, 312, 373
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 233, 338
HpyF3I	CTNAG	2 cut(s)	170, 408
HpySE526I	ACGT	1 cut(s)	628
Hsp92II	CATG	5 cut(s)	301, 322, 341, 454, 461
Kzo9I	GATC	4 cut(s)	60, 118, 512, 571
LguI	GCTCTTC	2 cut(s)	119, 339
LmnI	GCTCC	2 cut(s)	10, 238
LweI	GCATC	1 cut(s)	74
MabI	ACCWGGT	1 cut(s)	50
MaeII	ACGT	1 cut(s)	628
MaeIII	GTNAC	1 cut(s)	54
MalI	GATC	4 cut(s)	62, 120, 514, 573
MboI	GATC	4 cut(s)	60, 118, 512, 571
MboII	GAAGA	6 cut(s)	106, 181, 286, 326, 369, 629
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	5 cut(s)	77, 125, 385, 399, 600
MlyI	GAGTC	4 cut(s)	174, 181, 292, 616
MnlI	CCTC	9 cut(s)	16, 56, 194, 208, 297, 391, 417, 443, 540
MseI	TTAA	2 cut(s)	599, 640
MslI	CAYNNNNRTG	1 cut(s)	462
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	3 cut(s)	20, 52, 279
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	2 cut(s)	52, 279
MwoI	GCNNNNNNNGC	3 cut(s)	109, 233, 338
NciI	CCSGG	1 cut(s)	20
NcoI	CCATGG	1 cut(s)	450
NdeII	GATC	4 cut(s)	60, 118, 512, 571
NlaIII	CATG	5 cut(s)	301, 322, 341, 454, 461
NlaIV	GGNNCC	1 cut(s)	361
NspI	RCATGY	1 cut(s)	322
PaeI	GCATGC	1 cut(s)	322
PciSI	GCTCTTC	2 cut(s)	119, 339
PctI	GAATGC	1 cut(s)	373
PfeI	GAWTC	2 cut(s)	291, 412
PflFI	GACNNNGTC	1 cut(s)	458
PfoI	TCCNGGA	1 cut(s)	18
PleI	GAGTC	4 cut(s)	174, 180, 291, 616
PpsI	GAGTC	4 cut(s)	174, 180, 291, 616
Ppu21I	YACGTR	1 cut(s)	629
PshBI	ATTAAT	1 cut(s)	599
Psp6I	CCWGG	2 cut(s)	50, 277
PspEI	GGTNACC	1 cut(s)	54
PspFI	CCCAGC	1 cut(s)	391
PspGI	CCWGG	2 cut(s)	50, 277
PspN4I	GGNNCC	1 cut(s)	361
PspPI	GGNCC	2 cut(s)	447, 454
PsyI	GACNNNGTC	1 cut(s)	458
RsaI	GTAC	1 cut(s)	631
RsaNI	GTAC	1 cut(s)	630
RseI	CAYNNNNRTG	1 cut(s)	462
SalI	GTCGAC	1 cut(s)	4
SapI	GCTCTTC	2 cut(s)	119, 339
SaqAI	TTAA	2 cut(s)	599, 640
Sau3AI	GATC	4 cut(s)	60, 118, 512, 571
Sau96I	GGNCC	2 cut(s)	447, 454
SchI	GAGTC	4 cut(s)	174, 181, 292, 616
ScrFI	CCNGG	3 cut(s)	20, 52, 279
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	7 cut(s)	56, 243, 258, 263, 334, 543, 631
SexAI	ACCWGGT	1 cut(s)	50
SfaNI	GCATC	1 cut(s)	74
SinI	GGWCC	2 cut(s)	447, 454
SmiMI	CAYNNNNRTG	1 cut(s)	462
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
SnaBI	TACGTA	1 cut(s)	629
SphI	GCATGC	1 cut(s)	322
Sse9I	AATT	5 cut(s)	77, 125, 385, 399, 600
SsiI	CCGC	2 cut(s)	236, 551
SspI	AATATT	1 cut(s)	349
StyD4I	CCNGG	3 cut(s)	18, 50, 277
StyI	CCWWGG	2 cut(s)	443, 450
TaiI	ACGT	1 cut(s)	631
TaqI	TCGA	6 cut(s)	5, 117, 289, 462, 475, 574
TasI	AATT	5 cut(s)	77, 125, 385, 399, 600
TfiI	GAWTC	2 cut(s)	291, 412
Tru1I	TTAA	2 cut(s)	599, 640
Tru9I	TTAA	2 cut(s)	599, 640
TscAI	CASTG	1 cut(s)	375
TspDTI	ATGAA	6 cut(s)	286, 326, 359, 461, 585, 630
TspGWI	ACGGA	2 cut(s)	23, 506
TspRI	CASTG	1 cut(s)	375
Tth111I	GACNNNGTC	1 cut(s)	458
VpaK11BI	GGWCC	2 cut(s)	447, 454
VspI	ATTAAT	1 cut(s)	599
XceI	RCATGY	1 cut(s)	322
XcmI	CCANNNNNNNNNTGG	1 cut(s)	494
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.