Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003175.1

Orthogroup ID

OG0012601

Physical Location & Seq

Genomic Coordinates Forward (+)

54532 .. 57563

Gene Structure 3032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003175.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

atgacggttgagatcgtctctgatggcggtggagacttgatggatgtgttggcccgaagcccgtgggagatcttgccaatgtcagagaagaagaagaagaatgttgtctttgatctccctgaagatattattgtaaagattctatgtaggttgcctgtcaaaactttgattcgattcacttgtgtgtcaaaacgttggcgttctataataatctctgaccctcagtttgctaaatcccaactcaagctagcatctcagcagaaagccctctgtcatagatttctagtcagcatcctctctctacttgaagcccatatccagtgtcgatgcgacttcttagaatcttcagtaaaaaaggcagcattgtcccaactccagactaagtttcgaaccttagatttggaagcgcccactcaatttggaaatgcttcttcggtcaagattctcacctccccatttgaggggcttgtcaggccaatggctacttgcaatggtttggtaattctaagtgatgtccattgtacaaacttgtctatctggaagccttcaactgcattcttccgcaaaatacctgatccaggtatttgggcaaaaatgacaaccaagaatggaaacagaagatgggcagtttttgtatgttgtggtgttgggtatgtgtcagcaactgatgactacaaatttgttattctattccatgatttaccttttttgttgggtgttcacattttctcggtgagagataattcatggaaaattgttcaagtcccaggcattcacgacgactggatcttcagcagcaagggggttctttcaaatgaagtactccattggatcactgagaacaaaactaatgagctagttatctctgctttcgatttggctgaggaggagttccataaagagtcgttgctattccctgcggatgtagactgcaacgtttatgatccggactacaacatttgtgaggatcctttaggatttgggcactcgagttttggggctgtgttggtcgaggagggccgctgctgggtatctgtcggcggcgtttgttcaacggtggccggggtccgagagcgacagcggagcgatgatctgggatatgggaaggtagtggtggtgctgcagcaattgttttgggctggatctagtaactgggccctctttgcctcatccgattgtggacctgtcctagggctagtggtttttgggcctggggcttcatcttcatcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1

Protein Analysis

410

Amino Acids

45.49

Weight (kDa)

6.32

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012601)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41860 FvH4_5g17340
rosa_chinensis	RchiOBHm_Chr4g0389261 RchiOBHm_Chr5g0075701
rosa_multiflora	Rmu_sc0002398.1_g000004 Rmu_sc0003175.1_g000007 Rmu_sc0007018.1_g000001 Rmu_sc0012670.1_g000004
rosa_roxburghii	Rroxscaffold_2G00133960
rosa_rugosa	Rorug03G0366900.1 Rorug04G0064600 Rorug05G0442200
rosa_samantha	Rh5AG498600 Rh5AG498700 Rh5AG501200 Rh5BG519800 Rh5CG543800 Rh5DG529700
rosa_wichuraiana	Rw5G046280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	927
AccIII	TCCGGA	1 cut(s)	946
AciI	CCGC	6 cut(s)	27, 562, 920, 1021, 1041, 1081
AclI	AACGTT	2 cut(s)	193, 936
AclWI	GGATC	7 cut(s)	569, 794, 839, 938, 962, 975, 1150
AcoI	YGGCCR	1 cut(s)	1059
AcsI	RAATTY	1 cut(s)	677
AcuI	CTGAAG	3 cut(s)	141, 330, 775
AfaI	GTAC	2 cut(s)	523, 822
AfiI	CCNNNNNNNGG	5 cut(s)	460, 461, 578, 1027, 1190
AgsI	TTSAA	5 cut(s)	308, 549, 761, 813, 1053
AjnI	CCWGG	3 cut(s)	577, 766, 1210
AleI	CACNNNNGTG	1 cut(s)	182
AluBI	AGCT	2 cut(s)	247, 856
AluI	AGCT	2 cut(s)	247, 856
Alw26I	GTCTC	2 cut(s)	22, 27
AlwI	GGATC	7 cut(s)	569, 794, 839, 938, 962, 975, 1150
AlwNI	CAGNNNCTG	1 cut(s)	665
Ama87I	CYCGRG	1 cut(s)	988
Aor13HI	TCCGGA	1 cut(s)	946
AoxI	GGCC	6 cut(s)	51, 473, 1018, 1059, 1155, 1208
ApaI	GGGCCC	1 cut(s)	1159
ApeKI	GCWGC	5 cut(s)	359, 795, 1023, 1120, 1123
ApoI	RAATTY	1 cut(s)	677
ArsI	GACNNNNNNTTYG	4 cut(s)	209, 241, 662, 694
Asp700I	GAANNNNTTC	1 cut(s)	427
AspA2I	CCTAGG	1 cut(s)	1189
AspLEI	GCGC	1 cut(s)	409
AspS9I	GGNCC	7 cut(s)	52, 1018, 1066, 1155, 1156, 1181, 1208
AsuC2I	CCSGG	1 cut(s)	1063
AsuHPI	GGTGA	2 cut(s)	439, 745
AsuII	TTCGAA	1 cut(s)	388
AsuNHI	GCTAGC	1 cut(s)	247
AvaI	CYCGRG	1 cut(s)	988
AvaII	GGWCC	2 cut(s)	1066, 1181
AvrII	CCTAGG	1 cut(s)	1189
BaeGI	GKGCMC	2 cut(s)	987, 1159
BamHI	GGATCC	1 cut(s)	967
BanII	GRGCYC	1 cut(s)	1159
BbvCI	CCTCAGC	1 cut(s)	882
BbvI	GCAGC	5 cut(s)	371, 807, 1010, 1107, 1135
BccI	CCATC	3 cut(s)	17, 34, 615
BciT130I	CCWGG	3 cut(s)	579, 768, 1212
BcnI	CCSGG	1 cut(s)	1063
BcoDI	GTCTC	2 cut(s)	22, 27
BfaI	CTAG	7 cut(s)	248, 284, 857, 1146, 1190, 1196, 1231
BfmI	CTRYAG	1 cut(s)	1121
BfoI	RGCGCY	1 cut(s)	410
BglII	AGATCT	1 cut(s)	69
BisI	GCNGC	7 cut(s)	360, 796, 1021, 1024, 1042, 1121, 1124
BlnI	CCTAGG	1 cut(s)	1189
BlsI	GCNGC	7 cut(s)	361, 797, 1022, 1025, 1043, 1122, 1125
BmcAI	AGTACT	1 cut(s)	822
Bme1390I	CCNGG	4 cut(s)	579, 768, 1063, 1212
Bme18I	GGWCC	2 cut(s)	1066, 1181
BmeT110I	CYCGRG	1 cut(s)	988
BmgT120I	GGNCC	7 cut(s)	52, 1018, 1066, 1155, 1156, 1181, 1208
BmiI	GGNNCC	3 cut(s)	969, 1067, 1157
BmrFI	CCNGG	4 cut(s)	579, 768, 1063, 1212
BmrI	ACTGGG	1 cut(s)	1162
BmsI	GCATC	3 cut(s)	260, 300, 317
BmtI	GCTAGC	1 cut(s)	251
BmuI	ACTGGG	1 cut(s)	1162
BplI	GAGNNNNNCTC	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	359
Bpu10I	CCTNAGC	1 cut(s)	882
Bpu14I	TTCGAA	1 cut(s)	388
BpuEI	CTTGAG	1 cut(s)	227
BpuMI	CCSGG	1 cut(s)	1063
BsaJI	CCNNGG	5 cut(s)	62, 766, 1062, 1189, 1211
BsaWI	WCCGGW	1 cut(s)	946
Bsc4I	CCNNNNNNNGG	5 cut(s)	460, 461, 578, 1027, 1190
Bse1I	ACTGG	3 cut(s)	319, 788, 1157
Bse3DI	GCAATG	1 cut(s)	496
BseAI	TCCGGA	1 cut(s)	946
BseBI	CCWGG	3 cut(s)	579, 768, 1212
BseDI	CCNNGG	5 cut(s)	62, 766, 1062, 1189, 1211
BseGI	GGATG	5 cut(s)	49, 291, 928, 1169, 1226
BseLI	CCNNNNNNNGG	5 cut(s)	460, 461, 578, 1027, 1190
BseMI	GCAATG	1 cut(s)	496
BseMII	CTCAG	4 cut(s)	236, 269, 828, 873
BseNI	ACTGG	3 cut(s)	319, 788, 1157
BseRI	GAGGAG	3 cut(s)	899, 902, 1028
BseSI	GKGCMC	2 cut(s)	987, 1159
BseXI	GCAGC	5 cut(s)	371, 807, 1010, 1107, 1135
BseYI	CCCAGC	1 cut(s)	1026
BshFI	GGCC	6 cut(s)	53, 475, 1020, 1061, 1157, 1210
BsiHKCI	CYCGRG	1 cut(s)	988
BsiSI	CCGG	2 cut(s)	947, 1062
BslFI	GGGAC	2 cut(s)	352, 749
BslI	CCNNNNNNNGG	5 cut(s)	460, 461, 578, 1027, 1190
BsmAI	GTCTC	2 cut(s)	22, 27
BsmBI	CGTCTC	1 cut(s)	22
BsmFI	GGGAC	2 cut(s)	352, 749
BsmI	GAATGC	2 cut(s)	554, 771
BsnI	GGCC	6 cut(s)	53, 475, 1020, 1061, 1157, 1210
BsoBI	CYCGRG	1 cut(s)	988
Bsp119I	TTCGAA	1 cut(s)	388
Bsp120I	GGGCCC	1 cut(s)	1155
Bsp1286I	GDGCHC	2 cut(s)	987, 1159
Bsp13I	TCCGGA	1 cut(s)	946
Bsp1407I	TGTACA	1 cut(s)	521
BspACI	CCGC	6 cut(s)	27, 562, 920, 1021, 1041, 1081
BspANI	GGCC	6 cut(s)	53, 475, 1020, 1061, 1157, 1210
BspCNI	CTCAG	4 cut(s)	235, 268, 829, 874
BspEI	TCCGGA	1 cut(s)	946
BspLI	GGNNCC	3 cut(s)	969, 1067, 1157
BspMAI	CTGCAG	1 cut(s)	1125
BspOI	GCTAGC	1 cut(s)	251
BspPI	GGATC	7 cut(s)	569, 794, 839, 938, 962, 975, 1150
BspT104I	TTCGAA	1 cut(s)	388
BsrDI	GCAATG	1 cut(s)	496
BsrGI	TGTACA	1 cut(s)	521
BsrI	ACTGG	3 cut(s)	319, 788, 1157
BssECI	CCNNGG	5 cut(s)	62, 766, 1062, 1189, 1211
BssT1I	CCWWGG	1 cut(s)	1189
Bst2UI	CCWGG	3 cut(s)	579, 768, 1212
Bst4CI	ACNGT	2 cut(s)	7, 1057
BstAUI	TGTACA	1 cut(s)	521
BstBI	TTCGAA	1 cut(s)	388
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	8 cut(s)	222, 255, 337, 381, 394, 506, 837, 882
BstDSI	CCRYGG	1 cut(s)	62
BstENI	CCTNNNNNAGG	2 cut(s)	576, 1188
BstF5I	GGATG	5 cut(s)	49, 291, 928, 1169, 1226
BstH2I	RGCGCY	1 cut(s)	410
BstHHI	GCGC	1 cut(s)	409
BstMAI	GTCTC	2 cut(s)	22, 27
BstMWI	GCNNNNNNNGC	2 cut(s)	472, 1163
BstNI	CCWGG	3 cut(s)	579, 768, 1212
BstSCI	CCNGG	4 cut(s)	577, 766, 1061, 1210
BstSFI	CTRYAG	1 cut(s)	1121
BstSLI	GKGCMC	2 cut(s)	987, 1159
BstV1I	GCAGC	5 cut(s)	371, 807, 1010, 1107, 1135
BstX2I	RGATCY	4 cut(s)	69, 786, 967, 1142
BstXI	CCANNNNNNTGG	1 cut(s)	585
BstYI	RGATCY	4 cut(s)	69, 786, 967, 1142
BsuRI	GGCC	6 cut(s)	53, 475, 1020, 1061, 1157, 1210
BtgI	CCRYGG	1 cut(s)	62
BtgZI	GCGATG	1 cut(s)	1101
BtsCI	GGATG	5 cut(s)	49, 291, 928, 1169, 1226
BtsIMutI	CAGTG	2 cut(s)	326, 834
Cac8I	GCNNGC	1 cut(s)	249
CaiI	CAGNNNCTG	1 cut(s)	665
CfoI	GCGC	1 cut(s)	409
Cfr13I	GGNCC	7 cut(s)	52, 1018, 1066, 1155, 1156, 1181, 1208
Csp6I	GTAC	2 cut(s)	522, 821
CspCI	CAANNNNNGTGG	2 cut(s)	400, 435
CviAII	CATG	2 cut(s)	695, 747
CviQI	GTAC	2 cut(s)	522, 821
DdeI	CTNAG	8 cut(s)	222, 255, 337, 381, 394, 506, 837, 882
EaeI	YGGCCR	1 cut(s)	1059
Eco130I	CCWWGG	1 cut(s)	1189
Eco24I	GRGCYC	1 cut(s)	1159
Eco47I	GGWCC	2 cut(s)	1066, 1181
Eco57I	CTGAAG	3 cut(s)	141, 330, 775
Eco88I	CYCGRG	1 cut(s)	988
EcoNI	CCTNNNNNAGG	2 cut(s)	576, 1188
EcoO109I	RGGNCCY	1 cut(s)	1156
EcoRII	CCWGG	3 cut(s)	577, 766, 1210
EcoT14I	CCWWGG	1 cut(s)	1189
EcoT38I	GRGCYC	1 cut(s)	1159
ErhI	CCWWGG	1 cut(s)	1189
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	2 cut(s)	698, 750
FaqI	GGGAC	2 cut(s)	352, 749
FatI	CATG	2 cut(s)	694, 746
FblI	GTMKAC	1 cut(s)	927
Fnu4HI	GCNGC	7 cut(s)	360, 796, 1021, 1024, 1042, 1121, 1124
FokI	GGATG	5 cut(s)	56, 278, 935, 1156, 1213
FriOI	GRGCYC	1 cut(s)	1159
Fsp4HI	GCNGC	7 cut(s)	360, 796, 1021, 1024, 1042, 1121, 1124
FspBI	CTAG	7 cut(s)	248, 284, 857, 1146, 1190, 1196, 1231
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	7 cut(s)	360, 796, 1021, 1024, 1042, 1121, 1124
GsaI	CCCAGC	1 cut(s)	1030
GsuI	CTGGAG	1 cut(s)	359
HaeII	RGCGCY	1 cut(s)	410
HaeIII	GGCC	6 cut(s)	53, 475, 1020, 1061, 1157, 1210
HapII	CCGG	2 cut(s)	947, 1062
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	2 cut(s)	698, 750
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HinfI	GANTC	6 cut(s)	139, 169, 174, 341, 442, 902
HpaII	CCGG	2 cut(s)	947, 1062
HphI	GGTGA	2 cut(s)	439, 745
Hpy166II	GTNNAC	3 cut(s)	721, 928, 1181
Hpy188I	TCNGA	5 cut(s)	22, 85, 217, 1070, 1174
Hpy188III	TCNNGA	5 cut(s)	376, 439, 538, 776, 947
Hpy8I	GTNNAC	3 cut(s)	721, 928, 1181
Hpy99I	CGWCG	1 cut(s)	782
HpyAV	CCTTC	2 cut(s)	555, 1099
HpyCH4III	ACNGT	2 cut(s)	7, 1057
HpyCH4IV	ACGT	2 cut(s)	193, 936
HpyCH4V	TGCA	4 cut(s)	489, 554, 933, 1123
HpyF10VI	GCNNNNNNNGC	2 cut(s)	472, 1163
HpyF3I	CTNAG	8 cut(s)	222, 255, 337, 381, 394, 506, 837, 882
HpySE526I	ACGT	2 cut(s)	193, 936
Hsp92II	CATG	2 cut(s)	698, 750
HspAI	GCGC	1 cut(s)	407
Kpn2I	TCCGGA	1 cut(s)	946
LmnI	GCTCC	1 cut(s)	1083
Lsp1109I	GCAGC	5 cut(s)	371, 807, 1010, 1107, 1135
LweI	GCATC	3 cut(s)	260, 300, 317
MaeI	CTAG	7 cut(s)	248, 284, 857, 1146, 1190, 1196, 1231
MaeII	ACGT	2 cut(s)	193, 936
MaeIII	GTNAC	1 cut(s)	1148
MfeI	CAATTG	1 cut(s)	1127
MflI	RGATCY	4 cut(s)	69, 786, 967, 1142
MhlI	GDGCHC	2 cut(s)	987, 1159
MluCI	AATT	6 cut(s)	416, 501, 677, 742, 753, 1127
MlyI	GAGTC	1 cut(s)	911
MroI	TCCGGA	1 cut(s)	946
MroXI	GAANNNNTTC	1 cut(s)	427
MslI	CAYNNNNRTG	1 cut(s)	182
MspA1I	CMGCKG	2 cut(s)	1023, 1081
MspI	CCGG	2 cut(s)	947, 1062
MspR9I	CCNGG	4 cut(s)	579, 768, 1063, 1212
MunI	CAATTG	1 cut(s)	1127
Mva1269I	GAATGC	2 cut(s)	554, 771
MvaI	CCWGG	3 cut(s)	579, 768, 1212
MwoI	GCNNNNNNNGC	2 cut(s)	472, 1163
NciI	CCSGG	1 cut(s)	1063
NheI	GCTAGC	1 cut(s)	247
NlaIII	CATG	2 cut(s)	698, 750
NlaIV	GGNNCC	3 cut(s)	969, 1067, 1157
NspV	TTCGAA	1 cut(s)	388
OliI	CACNNNNGTG	1 cut(s)	182
PaeR7I	CTCGAG	1 cut(s)	988
PctI	GAATGC	2 cut(s)	554, 771
PdmI	GAANNNNTTC	1 cut(s)	427
PfeI	GAWTC	5 cut(s)	139, 169, 174, 341, 442
PkrI	GCNGC	7 cut(s)	361, 797, 1022, 1025, 1043, 1122, 1125
PleI	GAGTC	1 cut(s)	910
PpsI	GAGTC	1 cut(s)	910
Psp1406I	AACGTT	2 cut(s)	193, 936
Psp6I	CCWGG	3 cut(s)	577, 766, 1210
PspFI	CCCAGC	1 cut(s)	1026
PspGI	CCWGG	3 cut(s)	577, 766, 1210
PspN4I	GGNNCC	3 cut(s)	969, 1067, 1157
PspOMI	GGGCCC	1 cut(s)	1155
PspPI	GGNCC	7 cut(s)	52, 1018, 1066, 1155, 1156, 1181, 1208
PspXI	VCTCGAGB	1 cut(s)	988
PstI	CTGCAG	1 cut(s)	1125
PstNI	CAGNNNCTG	1 cut(s)	665
PsuI	RGATCY	4 cut(s)	69, 786, 967, 1142
RsaI	GTAC	2 cut(s)	523, 822
RsaNI	GTAC	2 cut(s)	522, 821
RseI	CAYNNNNRTG	1 cut(s)	182
SatI	GCNGC	7 cut(s)	360, 796, 1021, 1024, 1042, 1121, 1124
Sau96I	GGNCC	7 cut(s)	52, 1018, 1066, 1155, 1156, 1181, 1208
ScaI	AGTACT	1 cut(s)	822
SchI	GAGTC	1 cut(s)	911
ScrFI	CCNGG	4 cut(s)	579, 768, 1063, 1212
SduI	GDGCHC	2 cut(s)	987, 1159
SfaNI	GCATC	3 cut(s)	260, 300, 317
SfcI	CTRYAG	1 cut(s)	1121
Sfr274I	CTCGAG	1 cut(s)	988
SfuI	TTCGAA	1 cut(s)	388
SinI	GGWCC	2 cut(s)	1066, 1181
SlaI	CTCGAG	1 cut(s)	988
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	2 cut(s)	242, 988
SmoI	CTYRAG	2 cut(s)	242, 988
Sse9I	AATT	6 cut(s)	416, 501, 677, 742, 753, 1127
SsiI	CCGC	6 cut(s)	27, 562, 920, 1021, 1041, 1081
SspMI	CTAG	7 cut(s)	248, 284, 857, 1146, 1190, 1196, 1231
StyD4I	CCNGG	4 cut(s)	577, 766, 1061, 1210
StyI	CCWWGG	1 cut(s)	1189
TaaI	ACNGT	2 cut(s)	7, 1057
TaiI	ACGT	2 cut(s)	196, 939
TaqI	TCGA	6 cut(s)	172, 325, 388, 873, 989, 1011
TaqII	GACCGA	1 cut(s)	424
TasI	AATT	6 cut(s)	416, 501, 677, 742, 753, 1127
TatI	WGTACW	2 cut(s)	521, 820
TauI	GCSGC	2 cut(s)	1023, 1044
TfiI	GAWTC	5 cut(s)	139, 169, 174, 341, 442
TscAI	CASTG	2 cut(s)	326, 841
TseI	GCWGC	5 cut(s)	359, 795, 1023, 1120, 1123
TspDTI	ATGAA	4 cut(s)	735, 831, 1209, 1215
TspRI	CASTG	2 cut(s)	326, 841
VpaK11BI	GGWCC	2 cut(s)	1066, 1181
XagI	CCTNNNNNAGG	2 cut(s)	576, 1188
XapI	RAATTY	1 cut(s)	677
XhoI	CTCGAG	1 cut(s)	988
XmaJI	CCTAGG	1 cut(s)	1189
XmiI	GTMKAC	1 cut(s)	927
XmnI	GAANNNNTTC	1 cut(s)	427
XspI	CTAG	7 cut(s)	248, 284, 857, 1146, 1190, 1196, 1231
ZrmI	AGTACT	1 cut(s)	822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.