FvH4_3g43600

lysine-specific demethylase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
36326755 .. 36329649
2895 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g43600.t1

Sequence Viewer

Length: 1251 bp
ATGGCCCTCCCCGCCGCCTCCACCGCCCTCTCCGCCGCCGACTCCGACCTCCACCTCCCCACCCCGACCCTCGACTCCGAGTCCTCCGCCCTCCTCCACACCGTCTCCGAGCACGGCGGCTACGCCTACGTCAGCATGGCCTCACGCGCCGCCGCCGGCGACGTACGCGCGGCGGAGGCGGCTCGCGAGATGGCCTGGGAGCAGCTCCACTCCGGGCCCTGGCACTCTGTCCTCCCCGTCTGGCGCGACGCTTACGCAATGGCCTGCCTGCACGTCGCCAAGCTTCACTTCGCCGCCGGTGAGTTCTCCGACGCCCTCCGCGCTCTCGACATGGGCCTCCTCATGGGGGGACCGCTTTTCAAATCGGATCTCCACTCCGCCGTGAGCAAAGTCTCCGCGAAATCCCGCGCTAGGGTTTCCGAGGAAAACGGCCCCAATTTGGACCGCCGGTTGGTCCGTGACGACCTCAAAGCATCGGAGATGGTTGGAGTTTTGCCTCCAAAATCACTATCTTGTAAAATGGTGGTGAAGAAGTCTGGTTTATCTTTGGAAGGGTTTTTGAGAGAGCATTTCTTACCGGGATCGCCGGTTATTTTGACTGATTGTATGGGGCATTGGCCGGCCAGGACTAAGTGGAATGACATGGATTACCTGTTAAGAGTTGCCGGTGACCGGACGGTGCCGGTTGAGGTTGGGAAAAATTACTTGTACCCAGAGTGGAAGCAAGAGCTTATTACGTTTTCGCAGTTTCTTGAGAGGATTCGGGGTACTGACTCTTCCTCTGGTGTCCCGACATATCTTGCTCAGCACTCATTGTTTGATCAGATAAACGAGCTGCGTGAGGACATATGTATTCCAGACTATTGCTGTGCTGGTGGTGGGGAACTAAGGTCCACTAATGCTTGGTTTGGCCCGGCTGGGACTATAACCCCTTTACACCATGATCCACACCATAATGTGTTTGCTCAGGTAGTTGGGAAGAAGTATATTAGGCTCTATCGTGCTTCATTGTCAGAGGAACTCTATCCACATACTGAAACCATGCTTTGCAACTCAAGTCAGGTTGATCTAGACAACATAGATGAGAAAGAATTCCCCAAGGTGCAGGACTTGGAATTTCTAGACTGCATTTTAGAGGAAGGTGACATGCTTTATATCCCACCAAAGTGGTGGCACTATGTGCGGTCTCTGACAACTAGTATGTCAGTTAGCTTTTGGTGGAGTGATTATGACGGTTCAGCTACTTCTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

417

Amino Acids

46.26

Weight (kDa)

5.49

Isoelectric Point (pI)

44.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_KDM8_N PF24472 21 - 142 6.3e-64 KDM8-like, N-terminal ARM repeats
Cupin_8 PF13621 186 - 409 9e-49 Cupin-like domain
JmjC_2 PF08007 299 - 405 1.2e-11 JmjC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 679
AccII CGCG 8 cut(s) 147, 168, 170, 186, 246, 321, 398, 408
AclWI GGATC 3 cut(s) 375, 589, 938
AcoI YGGCCR 2 cut(s) 617, 621
AcsI RAATTY 2 cut(s) 1091, 1115
AcyI GRCGYC 1 cut(s) 312
AdeI CACNNNGTG 1 cut(s) 1180
AfaI GTAC 3 cut(s) 165, 710, 769
AfiI CCNNNNNNNGG 8 cut(s) 219, 343, 346, 411, 412, 439, 451, 672
AgsI TTSAA 1 cut(s) 361
AhdI GACNNNNNGTC 1 cut(s) 79
AhlI ACTAGT 1 cut(s) 1196
AjiI CACGTC 1 cut(s) 274
AjnI CCWGG 3 cut(s) 194, 218, 623
AjuI GAANNNNNNNTTGG 2 cut(s) 272, 304
AleI CACNNNNGTG 1 cut(s) 1165
AluBI AGCT 6 cut(s) 205, 283, 730, 835, 1212, 1241
AluI AGCT 6 cut(s) 205, 283, 730, 835, 1212, 1241
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 3 cut(s) 109, 397, 1191
AlwI GGATC 3 cut(s) 375, 589, 938
ApaI GGGCCC 1 cut(s) 219
ApeKI GCWGC 2 cut(s) 202, 835
ApoI RAATTY 2 cut(s) 1091, 1115
Asp700I GAANNNNTTC 1 cut(s) 1091
AspLEI GCGC 5 cut(s) 149, 170, 246, 323, 410
AsuC2I CCSGG 3 cut(s) 214, 579, 914
AsuHPI GGTGA 4 cut(s) 311, 538, 680, 1154
AvaII GGWCC 4 cut(s) 350, 442, 454, 891
BaeGI GKGCMC 1 cut(s) 219
BanI GGYRCC 1 cut(s) 679
BanII GRGCYC 1 cut(s) 219
BarI GAAGNNNNNNTAC 2 cut(s) 760, 792
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 214, 822
BccI CCATC 2 cut(s) 184, 475
BceAI ACGGC 3 cut(s) 130, 365, 445
BciT130I CCWGG 3 cut(s) 196, 220, 625
BclI TGATCA 1 cut(s) 820
BcnI CCSGG 3 cut(s) 214, 579, 914
BcoDI GTCTC 3 cut(s) 109, 397, 1191
BcuI ACTAGT 1 cut(s) 1196
BfaI CTAG 4 cut(s) 411, 1070, 1121, 1197
BlpI GCTNAGC 1 cut(s) 804
Bme1390I CCNGG 6 cut(s) 196, 214, 220, 579, 625, 914
Bme18I GGWCC 4 cut(s) 350, 442, 454, 891
BmeRI GACNNNNNGTC 1 cut(s) 79
BmgBI CACGTC 1 cut(s) 274
BmiI GGNNCC 4 cut(s) 217, 351, 433, 681
BmrFI CCNGG 6 cut(s) 196, 214, 220, 579, 625, 914
BmsI GCATC 1 cut(s) 482
Bpu10I CCTNAGC 1 cut(s) 966
Bpu1102I GCTNAGC 1 cut(s) 804
BpuEI CTTGAG 2 cut(s) 773, 1039
BpuMI CCSGG 3 cut(s) 214, 579, 914
BsaHI GRCGYC 1 cut(s) 312
BsaI GGTCTC 1 cut(s) 1191
BsaJI CCNNGG 4 cut(s) 195, 218, 420, 1098
BsaWI WCCGGW 1 cut(s) 672
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 8 cut(s) 219, 343, 346, 411, 412, 439, 451, 672
Bse118I RCCGGY 7 cut(s) 155, 296, 447, 586, 619, 665, 682
Bse3DI GCAATG 1 cut(s) 264
BseBI CCWGG 3 cut(s) 196, 220, 625
BseDI CCNNGG 4 cut(s) 195, 218, 420, 1098
BseLI CCNNNNNNNGG 8 cut(s) 219, 343, 346, 411, 412, 439, 451, 672
BseMI GCAATG 1 cut(s) 264
BseMII CTCAG 2 cut(s) 818, 980
BseRI GAGGAG 2 cut(s) 83, 329
BseSI GKGCMC 1 cut(s) 219
BseXI GCAGC 2 cut(s) 214, 822
BseYI CCCAGC 1 cut(s) 917
BsgI GTGCAG 2 cut(s) 254, 1124
Bsh1236I CGCG 8 cut(s) 147, 168, 170, 186, 246, 321, 398, 408
BshNI GGYRCC 1 cut(s) 679
BsiHKAI GWGCWC 1 cut(s) 114
BsiWI CGTACG 1 cut(s) 163
BslFI GGGAC 3 cut(s) 363, 773, 934
BslI CCNNNNNNNGG 8 cut(s) 219, 343, 346, 411, 412, 439, 451, 672
BsmAI GTCTC 3 cut(s) 109, 397, 1191
BsmBI CGTCTC 1 cut(s) 109
BsmFI GGGAC 3 cut(s) 363, 773, 934
Bso31I GGTCTC 1 cut(s) 1191
Bsp120I GGGCCC 1 cut(s) 215
Bsp1286I GDGCHC 2 cut(s) 114, 219
Bsp143I GATC 5 cut(s) 367, 581, 820, 943, 1066
Bsp1720I GCTNAGC 1 cut(s) 804
Bsp68I TCGCGA 1 cut(s) 186
BspCNI CTCAG 2 cut(s) 817, 979
BspFNI CGCG 8 cut(s) 147, 168, 170, 186, 246, 321, 398, 408
BspLI GGNNCC 4 cut(s) 217, 351, 433, 681
BspPI GGATC 3 cut(s) 375, 589, 938
BspT107I GGYRCC 1 cut(s) 679
BspTNI GGTCTC 1 cut(s) 1191
BsrDI GCAATG 1 cut(s) 264
BsrFI RCCGGY 7 cut(s) 155, 296, 447, 586, 619, 665, 682
BssAI RCCGGY 7 cut(s) 155, 296, 447, 586, 619, 665, 682
BssECI CCNNGG 4 cut(s) 195, 218, 420, 1098
BssMI GATC 5 cut(s) 367, 581, 820, 943, 1066
BssNI GRCGYC 1 cut(s) 312
BssT1I CCWWGG 1 cut(s) 1098
Bst2UI CCWGG 3 cut(s) 196, 220, 625
Bst4CI ACNGT 3 cut(s) 103, 679, 1235
Bst6I CTCTTC 1 cut(s) 781
BstACI GRCGYC 1 cut(s) 312
BstAPI GCANNNNNTGC 1 cut(s) 1180
BstC8I GCNNGC 5 cut(s) 157, 184, 265, 269, 621
BstDEI CTNAG 4 cut(s) 630, 804, 887, 966
BstEII GGTNACC 1 cut(s) 668
BstFNI CGCG 8 cut(s) 147, 168, 170, 186, 246, 321, 398, 408
BstHHI GCGC 5 cut(s) 149, 170, 246, 323, 410
BstKTI GATC 5 cut(s) 370, 584, 823, 946, 1069
BstMAI GTCTC 3 cut(s) 109, 397, 1191
BstMBI GATC 5 cut(s) 367, 581, 820, 943, 1066
BstMWI GCNNNNNNNGC 9 cut(s) 11, 23, 32, 146, 165, 176, 179, 320, 1180
BstNI CCWGG 3 cut(s) 196, 220, 625
BstNSI RCATGY 1 cut(s) 1150
BstPI GGTNACC 1 cut(s) 668
BstSCI CCNGG 6 cut(s) 194, 212, 218, 577, 623, 912
BstSLI GKGCMC 1 cut(s) 219
BstUI CGCG 8 cut(s) 147, 168, 170, 186, 246, 321, 398, 408
BstV1I GCAGC 2 cut(s) 214, 822
BstX2I RGATCY 1 cut(s) 367
BstXI CCANNNNNNTGG 2 cut(s) 1167, 1170
BstYI RGATCY 1 cut(s) 367
BtrI CACGTC 1 cut(s) 274
BtuMI TCGCGA 1 cut(s) 186
Cac8I GCNNGC 5 cut(s) 157, 184, 265, 269, 621
CfoI GCGC 5 cut(s) 149, 170, 246, 323, 410
Cfr10I RCCGGY 7 cut(s) 155, 296, 447, 586, 619, 665, 682
CseI GACGC 2 cut(s) 257, 320
Csp6I GTAC 3 cut(s) 164, 709, 768
CviAII CATG 7 cut(s) 136, 331, 343, 643, 941, 1042, 1147
CviQI GTAC 3 cut(s) 164, 709, 768
DdeI CTNAG 4 cut(s) 630, 804, 887, 966
DpnI GATC 5 cut(s) 369, 583, 822, 945, 1068
DpnII GATC 5 cut(s) 367, 581, 820, 943, 1066
DraIII CACNNNGTG 1 cut(s) 1180
DriI GACNNNNNGTC 1 cut(s) 79
EaeI YGGCCR 2 cut(s) 617, 621
Eam1104I CTCTTC 1 cut(s) 781
Eam1105I GACNNNNNGTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 781
EciI GGCGGA 4 cut(s) 22, 76, 188, 367
Eco130I CCWWGG 1 cut(s) 1098
Eco24I GRGCYC 1 cut(s) 219
Eco31I GGTCTC 1 cut(s) 1191
Eco47I GGWCC 4 cut(s) 350, 442, 454, 891
Eco91I GGTNACC 1 cut(s) 668
EcoO109I RGGNCCY 1 cut(s) 216
EcoO65I GGTNACC 1 cut(s) 668
EcoRI GAATTC 1 cut(s) 1091
EcoRII CCWGG 3 cut(s) 194, 218, 623
EcoT14I CCWWGG 1 cut(s) 1098
EcoT38I GRGCYC 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 1098
Esp3I CGTCTC 1 cut(s) 109
FaeI CATG 7 cut(s) 139, 334, 346, 646, 944, 1045, 1150
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FaqI GGGAC 3 cut(s) 363, 773, 934
FatI CATG 7 cut(s) 135, 330, 342, 642, 940, 1041, 1146
FauI CCCGC 2 cut(s) 19, 413
FauNDI CATATG 1 cut(s) 848
FbaI TGATCA 1 cut(s) 820
FriOI GRGCYC 1 cut(s) 219
FseI GGCCGGCC 1 cut(s) 623
FspBI CTAG 4 cut(s) 411, 1070, 1121, 1197
GlaI GCGC 5 cut(s) 148, 169, 245, 322, 409
GsaI CCCAGC 1 cut(s) 921
HgaI GACGC 2 cut(s) 257, 320
HhaI GCGC 5 cut(s) 149, 170, 246, 323, 410
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 7 cut(s) 139, 334, 346, 646, 944, 1045, 1150
Hin6I GCGC 5 cut(s) 147, 168, 244, 321, 408
HinP1I GCGC 5 cut(s) 147, 168, 244, 321, 408
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 5 cut(s) 41, 74, 80, 760, 773
HphI GGTGA 4 cut(s) 311, 538, 680, 1154
Hpy166II GTNNAC 1 cut(s) 894
Hpy188III TCNNGA 8 cut(s) 185, 326, 752, 790, 857, 1070, 1121, 1248
Hpy8I GTNNAC 1 cut(s) 894
Hpy99I CGWCG 4 cut(s) 164, 251, 278, 314
HpyAV CCTTC 2 cut(s) 545, 1133
HpyCH4III ACNGT 3 cut(s) 103, 679, 1235
HpyCH4IV ACGT 4 cut(s) 129, 162, 273, 737
HpyCH4V TGCA 4 cut(s) 271, 1050, 1105, 1128
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 23, 32, 146, 165, 176, 179, 320, 1180
HpyF3I CTNAG 4 cut(s) 630, 804, 887, 966
HpySE526I ACGT 4 cut(s) 129, 162, 273, 737
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 7 cut(s) 139, 334, 346, 646, 944, 1045, 1150
HspAI GCGC 5 cut(s) 147, 168, 244, 321, 408
KroI GCCGGC 2 cut(s) 155, 619
KroNI GCCGGC 2 cut(s) 157, 621
Ksp22I TGATCA 1 cut(s) 820
Kzo9I GATC 5 cut(s) 367, 581, 820, 943, 1066
LmnI GCTCC 2 cut(s) 199, 210
Lsp1109I GCAGC 2 cut(s) 214, 822
LweI GCATC 1 cut(s) 482
MaeI CTAG 4 cut(s) 411, 1070, 1121, 1197
MaeII ACGT 4 cut(s) 129, 162, 273, 737
MaeIII GTNAC 3 cut(s) 458, 668, 1142
MalI GATC 5 cut(s) 369, 583, 822, 945, 1068
MboI GATC 5 cut(s) 367, 581, 820, 943, 1066
MboII GAAGA 3 cut(s) 541, 768, 991
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 2 cut(s) 114, 219
MluCI AATT 4 cut(s) 436, 700, 1091, 1115
MlyI GAGTC 4 cut(s) 35, 68, 89, 767
MmeI TCCRAC 3 cut(s) 69, 333, 466
MreI CGCCGGCG 1 cut(s) 155
MroNI GCCGGC 2 cut(s) 155, 619
MroXI GAANNNNTTC 1 cut(s) 1091
MseI TTAA 1 cut(s) 656
MslI CAYNNNNRTG 2 cut(s) 954, 1165
MspR9I CCNGG 6 cut(s) 196, 214, 220, 579, 625, 914
MvaI CCWGG 3 cut(s) 196, 220, 625
MvnI CGCG 8 cut(s) 147, 168, 170, 186, 246, 321, 398, 408
MwoI GCNNNNNNNGC 9 cut(s) 11, 23, 32, 146, 165, 176, 179, 320, 1180
NaeI GCCGGC 2 cut(s) 157, 621
NciI CCSGG 3 cut(s) 214, 579, 914
NdeI CATATG 1 cut(s) 848
NdeII GATC 5 cut(s) 367, 581, 820, 943, 1066
NgoMIV GCCGGC 2 cut(s) 155, 619
NlaIII CATG 7 cut(s) 139, 334, 346, 646, 944, 1045, 1150
NlaIV GGNNCC 4 cut(s) 217, 351, 433, 681
NmuCI GTSAC 3 cut(s) 458, 668, 1142
NruI TCGCGA 1 cut(s) 186
NspI RCATGY 1 cut(s) 1150
OliI CACNNNNGTG 1 cut(s) 1165
PdiI GCCGGC 2 cut(s) 157, 621
PdmI GAANNNNTTC 1 cut(s) 1091
PfeI GAWTC 1 cut(s) 760
Pfl23II CGTACG 1 cut(s) 163
PleI GAGTC 4 cut(s) 35, 68, 88, 767
PpsI GAGTC 4 cut(s) 35, 68, 88, 767
Psp6I CCWGG 3 cut(s) 194, 218, 623
PspEI GGTNACC 1 cut(s) 668
PspFI CCCAGC 1 cut(s) 917
PspGI CCWGG 3 cut(s) 194, 218, 623
PspLI CGTACG 1 cut(s) 163
PspN4I GGNNCC 4 cut(s) 217, 351, 433, 681
PspOMI GGGCCC 1 cut(s) 215
PsuI RGATCY 1 cut(s) 367
RigI GGCCGGCC 1 cut(s) 623
RruI TCGCGA 1 cut(s) 186
RsaI GTAC 3 cut(s) 165, 710, 769
RsaNI GTAC 3 cut(s) 164, 709, 768
RseI CAYNNNNRTG 2 cut(s) 954, 1165
SaqAI TTAA 1 cut(s) 656
Sau3AI GATC 5 cut(s) 367, 581, 820, 943, 1066
SchI GAGTC 4 cut(s) 35, 68, 89, 767
ScrFI CCNGG 6 cut(s) 196, 214, 220, 579, 625, 914
SduI GDGCHC 2 cut(s) 114, 219
SfaNI GCATC 1 cut(s) 482
SgrAI CRCCGGYG 2 cut(s) 155, 296
SinI GGWCC 4 cut(s) 350, 442, 454, 891
SmiMI CAYNNNNRTG 2 cut(s) 954, 1165
SmlI CTYRAG 2 cut(s) 752, 1054
SmoI CTYRAG 2 cut(s) 752, 1054
SpeI ACTAGT 1 cut(s) 1196
Sse9I AATT 4 cut(s) 436, 700, 1091, 1115
SspMI CTAG 4 cut(s) 411, 1070, 1121, 1197
StyD4I CCNGG 6 cut(s) 194, 212, 218, 577, 623, 912
StyI CCWWGG 1 cut(s) 1098
TaaI ACNGT 3 cut(s) 103, 679, 1235
TaiI ACGT 4 cut(s) 132, 165, 276, 740
TaqI TCGA 2 cut(s) 72, 327
TasI AATT 4 cut(s) 436, 700, 1091, 1115
TauI GCSGC 8 cut(s) 17, 38, 120, 152, 155, 173, 182, 296
TfiI GAWTC 1 cut(s) 760
Tru1I TTAA 1 cut(s) 656
Tru9I TTAA 1 cut(s) 656
TseFI GTSAC 3 cut(s) 458, 668, 1142
TseI GCWGC 2 cut(s) 202, 835
Tsp45I GTSAC 3 cut(s) 458, 668, 1142
TspDTI ATGAA 1 cut(s) 996
TspGWI ACGGA 1 cut(s) 446
VpaK11BI GGWCC 4 cut(s) 350, 442, 454, 891
XapI RAATTY 2 cut(s) 1091, 1115
XbaI TCTAGA 2 cut(s) 1069, 1120
XceI RCATGY 1 cut(s) 1150
XcmI CCANNNNNNNNNTGG 1 cut(s) 1167
XmnI GAANNNNTTC 1 cut(s) 1091
XspI CTAG 4 cut(s) 411, 1070, 1121, 1197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.