RLG00000036763

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0005300
Physical Location & Seq
Forward (+)
84252388 .. 84255028
2641 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036763

Sequence Viewer

Length: 630 bp
ATGGCCACAGCAGCTATCAACTTAGGCCTCGTAAAGCCGTCTCCTTTCTCTGTTCCCAAGCCTCAAAACCCTTCAAAGCTTAGGGTTTTCACTATCCGATGCTCCTCCGCCACCGCTAATTCTGTCTCAGGGTTTTTAAGAGAACATTTCTTACCGGGATCGCCGGTTATTTTGACCGATTGTATGGCTCATTGGCCGGCGAGGGCAAAGTGGAATGACATGGATTACCTGATAAGAGTTGCCGGTGACCGGACGGTACCGGTTGAGGTGGGGAAAAATTACTTGGAGCTTATTAGGTTTTCGCAGTTTCTTGAGAGGATTCGGGGTAATGACTTTTCCTCTGGTGTCCCGACGTATCTTGCTCAGCACTCATTGTTTGATCAGATAAATGAGTTGTGTGAGGACATATGTATGCCCGACTATTGTTGTGCTGGTGGTGGCGAACTAAGGTCTCTAAATGCTTGGTTTGGTCTGGCTGGGACTGTACATGATCCGCACCGTAATGTGTTTGCGCAGGAAGGTGACATGCTTTATATCCCACCAAAGTGGTGGCACAATGTCCAGTCTTTGACAACAAGTATGTCGGTTAGCTTTCGGCAGAGTGATTATGACAGTTCAGCTAAGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003700 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0007623 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008214 GO:0008276 GO:0008757 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010452 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016278 GO:0016279 GO:0016491 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032451 GO:0032452 GO:0034968 GO:0036211 GO:0042054 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0046975 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:0140110 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_8

Protein Analysis

210

Amino Acids

23.35

Weight (kDa)

6.58

Isoelectric Point (pI)

50.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_8 PF13621 45 - 169 9.9e-11 Cupin-like domain
JmjC_2 PF08007 164 - 199 6.2e-07 JmjC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 513
Acc65I GGTACC 1 cut(s) 256
AccB1I GGYRCC 1 cut(s) 256
AciI CCGC 3 cut(s) 108, 114, 494
AclWI GGATC 2 cut(s) 166, 485
AcoI YGGCCR 2 cut(s) 3, 194
AfaI GTAC 2 cut(s) 258, 486
AfiI CCNNNNNNNGG 1 cut(s) 249
AgeI ACCGGT 1 cut(s) 259
AgsI TTSAA 1 cut(s) 75
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
AleI CACNNNNGTG 1 cut(s) 544
AluBI AGCT 5 cut(s) 14, 79, 289, 591, 620
AluI AGCT 5 cut(s) 14, 79, 289, 591, 620
Alw26I GTCTC 3 cut(s) 45, 130, 456
AlwI GGATC 2 cut(s) 166, 485
AoxI GGCC 3 cut(s) 3, 25, 194
ApeKI GCWGC 1 cut(s) 11
AsiGI ACCGGT 1 cut(s) 259
Asp718I GGTACC 1 cut(s) 256
AspLEI GCGC 1 cut(s) 514
AsuC2I CCSGG 1 cut(s) 156
AsuHPI GGTGA 2 cut(s) 257, 533
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 256
BbvI GCAGC 1 cut(s) 23
BceAI ACGGC 1 cut(s) 22
BclI TGATCA 1 cut(s) 379
BcnI CCSGG 1 cut(s) 156
BcoDI GTCTC 3 cut(s) 45, 130, 456
BisI GCNGC 1 cut(s) 12
BlpI GCTNAGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 156
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 156
BmsI GCATC 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 80
Bpu1102I GCTNAGC 1 cut(s) 363
BpuEI CTTGAG 1 cut(s) 332
BpuMI CCSGG 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 456
BsaWI WCCGGW 2 cut(s) 249, 259
Bsc4I CCNNNNNNNGG 1 cut(s) 249
Bse118I RCCGGY 4 cut(s) 163, 196, 242, 259
Bse1I ACTGG 1 cut(s) 562
BseLI CCNNNNNNNGG 1 cut(s) 249
BseMII CTCAG 2 cut(s) 141, 377
BseNI ACTGG 1 cut(s) 562
BseRI GAGGAG 1 cut(s) 94
BseXI GCAGC 1 cut(s) 23
BseYI CCCAGC 1 cut(s) 476
BshFI GGCC 3 cut(s) 5, 27, 196
BshNI GGYRCC 1 cut(s) 256
BshTI ACCGGT 1 cut(s) 259
BsiSI CCGG 6 cut(s) 155, 164, 197, 243, 250, 260
BslFI GGGAC 2 cut(s) 332, 493
BslI CCNNNNNNNGG 1 cut(s) 249
BsmAI GTCTC 3 cut(s) 45, 130, 456
BsmBI CGTCTC 1 cut(s) 45
BsmFI GGGAC 2 cut(s) 332, 493
BsnI GGCC 3 cut(s) 5, 27, 196
Bso31I GGTCTC 1 cut(s) 456
Bsp1407I TGTACA 1 cut(s) 484
Bsp143I GATC 3 cut(s) 158, 379, 490
Bsp1720I GCTNAGC 1 cut(s) 363
BspACI CCGC 3 cut(s) 108, 114, 494
BspANI GGCC 3 cut(s) 5, 27, 196
BspCNI CTCAG 2 cut(s) 140, 376
BspLI GGNNCC 1 cut(s) 258
BspPI GGATC 2 cut(s) 166, 485
BspT107I GGYRCC 1 cut(s) 256
BspTNI GGTCTC 1 cut(s) 456
BsrFI RCCGGY 4 cut(s) 163, 196, 242, 259
BsrGI TGTACA 1 cut(s) 484
BsrI ACTGG 1 cut(s) 562
BssAI RCCGGY 4 cut(s) 163, 196, 242, 259
BssMI GATC 3 cut(s) 158, 379, 490
Bst4CI ACNGT 4 cut(s) 256, 484, 500, 614
BstAUI TGTACA 1 cut(s) 484
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 6 cut(s) 22, 80, 127, 363, 446, 621
BstEII GGTNACC 1 cut(s) 245
BstHHI GCGC 1 cut(s) 514
BstKTI GATC 3 cut(s) 161, 382, 493
BstMAI GTCTC 3 cut(s) 45, 130, 456
BstMBI GATC 3 cut(s) 158, 379, 490
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 529
BstPI GGTNACC 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 23
BstXI CCANNNNNNTGG 2 cut(s) 546, 549
BsuRI GGCC 3 cut(s) 5, 27, 196
Cac8I GCNNGC 1 cut(s) 198
CfoI GCGC 1 cut(s) 514
Cfr10I RCCGGY 4 cut(s) 163, 196, 242, 259
Csp6I GTAC 2 cut(s) 257, 485
CspAI ACCGGT 1 cut(s) 259
CviAII CATG 3 cut(s) 220, 488, 526
CviQI GTAC 2 cut(s) 257, 485
DdeI CTNAG 6 cut(s) 22, 80, 127, 363, 446, 621
DpnI GATC 3 cut(s) 160, 381, 492
DpnII GATC 3 cut(s) 158, 379, 490
EaeI YGGCCR 2 cut(s) 3, 194
EciI GGCGGA 1 cut(s) 97
Eco147I AGGCCT 1 cut(s) 27
Eco31I GGTCTC 1 cut(s) 456
Eco91I GGTNACC 1 cut(s) 245
EcoO65I GGTNACC 1 cut(s) 245
Esp3I CGTCTC 1 cut(s) 45
FaeI CATG 3 cut(s) 223, 491, 529
FaqI GGGAC 2 cut(s) 332, 493
FatI CATG 3 cut(s) 219, 487, 525
FauNDI CATATG 1 cut(s) 407
FbaI TGATCA 1 cut(s) 379
Fnu4HI GCNGC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 12
FspI TGCGCA 1 cut(s) 513
GlaI GCGC 1 cut(s) 513
GluI GCNGC 1 cut(s) 12
GsaI CCCAGC 1 cut(s) 480
HaeIII GGCC 3 cut(s) 5, 27, 196
HapII CCGG 6 cut(s) 155, 164, 197, 243, 250, 260
HhaI GCGC 1 cut(s) 514
Hin1II CATG 3 cut(s) 223, 491, 529
Hin6I GCGC 1 cut(s) 512
HinP1I GCGC 1 cut(s) 512
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 1 cut(s) 319
HpaII CCGG 6 cut(s) 155, 164, 197, 243, 250, 260
HphI GGTGA 2 cut(s) 257, 533
Hpy188I TCNGA 2 cut(s) 98, 384
Hpy188III TCNNGA 2 cut(s) 311, 349
Hpy99I CGWCG 1 cut(s) 355
HpyAV CCTTC 2 cut(s) 81, 512
HpyCH4III ACNGT 4 cut(s) 256, 484, 500, 614
HpyCH4IV ACGT 1 cut(s) 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 6 cut(s) 22, 80, 127, 363, 446, 621
HpySE526I ACGT 1 cut(s) 353
Hsp92II CATG 3 cut(s) 223, 491, 529
HspAI GCGC 1 cut(s) 512
KpnI GGTACC 1 cut(s) 260
KroI GCCGGC 1 cut(s) 196
KroNI GCCGGC 1 cut(s) 198
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 3 cut(s) 158, 379, 490
LmnI GCTCC 2 cut(s) 107, 286
Lsp1109I GCAGC 1 cut(s) 23
LweI GCATC 1 cut(s) 89
MaeII ACGT 1 cut(s) 353
MaeIII GTNAC 2 cut(s) 245, 521
MalI GATC 3 cut(s) 160, 381, 492
MboI GATC 3 cut(s) 158, 379, 490
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 118, 277
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 8 cut(s) 38, 72, 115, 195, 259, 309, 349, 394
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 196
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 137, 628
MslI CAYNNNNRTG 3 cut(s) 410, 501, 544
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 6 cut(s) 155, 164, 197, 243, 250, 260
MspR9I CCNGG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 11
NaeI GCCGGC 1 cut(s) 198
NciI CCSGG 1 cut(s) 156
NdeI CATATG 1 cut(s) 407
NdeII GATC 3 cut(s) 158, 379, 490
NgoMIV GCCGGC 1 cut(s) 196
NlaIII CATG 3 cut(s) 223, 491, 529
NlaIV GGNNCC 1 cut(s) 258
NmuCI GTSAC 2 cut(s) 245, 521
NsbI TGCGCA 1 cut(s) 513
NspI RCATGY 1 cut(s) 529
OliI CACNNNNGTG 1 cut(s) 544
PceI AGGCCT 1 cut(s) 27
PdiI GCCGGC 1 cut(s) 198
PfeI GAWTC 1 cut(s) 319
PinAI ACCGGT 1 cut(s) 259
PkrI GCNGC 1 cut(s) 13
PspEI GGTNACC 1 cut(s) 245
PspFI CCCAGC 1 cut(s) 476
PspN4I GGNNCC 1 cut(s) 258
PsrI GAACNNNNNNTAC 2 cut(s) 135, 167
RsaI GTAC 2 cut(s) 258, 486
RsaNI GTAC 2 cut(s) 257, 485
RseI CAYNNNNRTG 3 cut(s) 410, 501, 544
SaqAI TTAA 2 cut(s) 137, 628
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 3 cut(s) 158, 379, 490
ScrFI CCNGG 1 cut(s) 156
SfaNI GCATC 1 cut(s) 89
SmiMI CAYNNNNRTG 3 cut(s) 410, 501, 544
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 2 cut(s) 118, 277
SseBI AGGCCT 1 cut(s) 27
SsiI CCGC 3 cut(s) 108, 114, 494
StuI AGGCCT 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 154
TaaI ACNGT 4 cut(s) 256, 484, 500, 614
TaiI ACGT 1 cut(s) 356
TaqII GACCGA 1 cut(s) 191
TasI AATT 2 cut(s) 118, 277
TatI WGTACW 1 cut(s) 484
TfiI GAWTC 1 cut(s) 319
Tru1I TTAA 2 cut(s) 137, 628
Tru9I TTAA 2 cut(s) 137, 628
TseFI GTSAC 2 cut(s) 245, 521
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 2 cut(s) 245, 521
XceI RCATGY 1 cut(s) 529
XcmI CCANNNNNNNNNTGG 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.