Prupe.6G015700_v2.0.a1

lysine-specific demethylase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
1127814 .. 1130837
3024 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G015700.1

Sequence Viewer

Length: 1224 bp
ATGTCCACCGCAAACTCTGACAACCATCTCCAGACCCCAATCCTTGACTCTGAGTCCGCTCAGCTCCTCCAGGCCGTCTCCCAGCACGGCGGCTACGCTTACGTCAGCATGGCGGCTCGAGCAGCCGCCGGAGACCTCCGGGCCGCAGAGGCGGCTCGCGAGATGGCTTGGGAGCAGCTCCACTCGGGCCCCTGGCACTCCGTGTTACCCGTGTGGCGCGACGCCTACTCCATGGCCTGCCTCCACGTGGCCAAGGTCCATGCCATCGACGGTGAGTTTAGCGACGCCCTCAGGGCACTCGACATGGGCCTCATCATGGGCGGCCCGCTCTTGAAACCCGACTTGCATTCCCTCATCGCCATTGTCTCTGCCAAAGCCAGGGCCGCTAGGGTTTCTGAAAAACAACAGCAATGCCCCAAATCGGACCGCCGATTGGTCCCTGACGACCTCGACTCGACGGAGTTGCTTGGAGTTTTGCCCACAAAGTCGCTTTCTTGTAAAATGGTTTTGAAGAGGTCTGGTCTATCTTTGGAGGGGTTTTTGCGTGAATATCTCTTACCGGGTTACCCAGTTATAATAAGCGATGGCATGGGTCATTGGCCGGCCAGGACTAAGTGGAATGACATGGATTATCTGACAACGGTTGCTGGTGATCGCACAGTGCCAGTTGAGGTTGGGAAAAATTATTTATACCCGGAGTGGAAGCAAGAACTTATTACATTTTCCCAGTTTCTTGAGAGGATTAAGGCTACTGGCTCTTCCTCTGCTGCCCCAACATATCTTGCTCAGCATCCATTGTTTGATCAGATAAACGAGCTGCGTGACGACATATGTATTCCCGACTATTGTTTTGCCGGTGGTGGGGATCTAAGGTCTCTAAATGCTTGGTTTGGTCCAGCTGGGACAGTAACCCCATTACACCATGATCCACACCATAATGTGCTTGCTCAGGTAGTTGGCAAAAAGTATATAAGGCTCTACCTGGCTTCGTTGTCAGAGGAACTCTACCCATACACTGAAACCATGCTTTGCAACTCAAGCCAGGTTGATCTAGACAACTTAGACGAGAAAGAGTTCCCAAAGATGCGTGACTTGGAATTTCTTGATTGCATTTTAGAGGAAGGTGATATGCTTTATATCCCACCAAAGTGGTGGCACTATGTGCGGTCTCTAACAACAAGTCTCTCTGTTAGCTTTTGGTGGAGTGAGTATGGAAGTTCATAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

408

Amino Acids

45.51

Weight (kDa)

5.37

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 575
AccBSI CCGCTC 2 cut(s) 59, 328
AccII CGCG 2 cut(s) 159, 219
AclWI GGATC 2 cut(s) 873, 920
AcoI YGGCCR 3 cut(s) 249, 599, 603
AcsI RAATTY 1 cut(s) 1097
AcvI CACGTG 1 cut(s) 247
AcyI GRCGYC 2 cut(s) 222, 285
AdeI CACNNNGTG 2 cut(s) 202, 1162
AfiI CCNNNNNNNGG 6 cut(s) 247, 316, 378, 421, 433, 861
AgsI TTSAA 2 cut(s) 334, 511
AhdI GACNNNNNGTC 1 cut(s) 52
AjnI CCWGG 6 cut(s) 69, 191, 377, 605, 981, 1041
AleI CACNNNNGTG 1 cut(s) 1147
AluBI AGCT 5 cut(s) 64, 178, 817, 899, 1194
AluI AGCT 5 cut(s) 64, 178, 817, 899, 1194
Alw26I GTCTC 6 cut(s) 82, 126, 370, 879, 1173, 1187
AlwI GGATC 2 cut(s) 873, 920
Ama87I CYCGRG 2 cut(s) 117, 184
ApaI GGGCCC 1 cut(s) 191
ApeKI GCWGC 4 cut(s) 122, 175, 767, 817
ApoI RAATTY 1 cut(s) 1097
ArsI GACNNNNNNTTYG 2 cut(s) 833, 865
Asp700I GAANNNNTTC 1 cut(s) 1073
AspLEI GCGC 1 cut(s) 219
AsuC2I CCSGG 3 cut(s) 140, 561, 695
AsuHPI GGTGA 3 cut(s) 284, 662, 1136
AvaI CYCGRG 2 cut(s) 117, 184
AvaII GGWCC 4 cut(s) 256, 424, 436, 893
AxyI CCTNAGG 1 cut(s) 290
BaeGI GKGCMC 2 cut(s) 191, 298
BalI TGGCCA 1 cut(s) 251
BanII GRGCYC 1 cut(s) 191
BbrPI CACGTG 1 cut(s) 247
BbvI GCAGC 4 cut(s) 134, 187, 754, 804
BccI CCATC 4 cut(s) 33, 157, 272, 578
BceAI ACGGC 2 cut(s) 59, 103
BcgI CGANNNNNNTGC 2 cut(s) 445, 479
BciT130I CCWGG 6 cut(s) 71, 193, 379, 607, 983, 1043
BclI TGATCA 1 cut(s) 802
BcnI CCSGG 3 cut(s) 140, 561, 695
BcoDI GTCTC 6 cut(s) 82, 126, 370, 879, 1173, 1187
BfaI CTAG 2 cut(s) 387, 1052
BglI GCCNNNNNGGC 2 cut(s) 149, 293
BlpI GCTNAGC 2 cut(s) 60, 786
Bme1390I CCNGG 9 cut(s) 71, 140, 193, 379, 561, 607, 695, 983, 1043
Bme18I GGWCC 4 cut(s) 256, 424, 436, 893
BmeRI GACNNNNNGTC 1 cut(s) 52
BmeT110I CYCGRG 2 cut(s) 117, 184
BmiI GGNNCC 3 cut(s) 189, 190, 438
BmrFI CCNGG 9 cut(s) 71, 140, 193, 379, 561, 607, 695, 983, 1043
BmrI ACTGGG 2 cut(s) 563, 721
BmsI GCATC 2 cut(s) 799, 1074
BmuI ACTGGG 2 cut(s) 563, 721
BpmI CTGGAG 2 cut(s) 14, 53
Bpu10I CCTNAGC 1 cut(s) 948
Bpu1102I GCTNAGC 2 cut(s) 60, 786
BpuEI CTTGAG 2 cut(s) 755, 1021
BpuMI CCSGG 3 cut(s) 140, 561, 695
BsaAI YACGTR 1 cut(s) 247
BsaHI GRCGYC 2 cut(s) 222, 285
BsaI GGTCTC 3 cut(s) 126, 879, 1173
BsaJI CCNNGG 4 cut(s) 191, 231, 252, 378
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bsc4I CCNNNNNNNGG 6 cut(s) 247, 316, 378, 421, 433, 861
Bse118I RCCGGY 2 cut(s) 601, 854
Bse1I ACTGG 4 cut(s) 569, 665, 727, 757
Bse21I CCTNAGG 1 cut(s) 290
Bse3DI GCAATG 1 cut(s) 416
BseBI CCWGG 6 cut(s) 71, 193, 379, 607, 983, 1043
BseDI CCNNGG 4 cut(s) 191, 231, 252, 378
BseGI GGATG 1 cut(s) 790
BseLI CCNNNNNNNGG 6 cut(s) 247, 316, 378, 421, 433, 861
BseMI GCAATG 1 cut(s) 416
BseMII CTCAG 5 cut(s) 42, 74, 304, 800, 962
BseNI ACTGG 4 cut(s) 569, 665, 727, 757
BseRI GAGGAG 1 cut(s) 56
BseSI GKGCMC 2 cut(s) 191, 298
BseXI GCAGC 4 cut(s) 134, 187, 754, 804
BseYI CCCAGC 2 cut(s) 81, 899
Bsh1236I CGCG 2 cut(s) 159, 219
BsiHKCI CYCGRG 2 cut(s) 117, 184
BsiSI CCGG 6 cut(s) 129, 139, 560, 602, 695, 855
BslFI GGGAC 2 cut(s) 422, 916
BslI CCNNNNNNNGG 6 cut(s) 247, 316, 378, 421, 433, 861
BsmAI GTCTC 6 cut(s) 82, 126, 370, 879, 1173, 1187
BsmBI CGTCTC 1 cut(s) 82
BsmFI GGGAC 2 cut(s) 422, 916
BsmI GAATGC 1 cut(s) 346
Bso31I GGTCTC 3 cut(s) 126, 879, 1173
BsoBI CYCGRG 2 cut(s) 117, 184
Bsp120I GGGCCC 1 cut(s) 187
Bsp1286I GDGCHC 2 cut(s) 191, 298
Bsp143I GATC 5 cut(s) 652, 802, 865, 925, 1048
Bsp1720I GCTNAGC 2 cut(s) 60, 786
Bsp19I CCATGG 1 cut(s) 231
Bsp68I TCGCGA 1 cut(s) 159
BspCNI CTCAG 5 cut(s) 43, 73, 303, 799, 961
BspFNI CGCG 2 cut(s) 159, 219
BspLI GGNNCC 3 cut(s) 189, 190, 438
BspPI GGATC 2 cut(s) 873, 920
BspQI GCTCTTC 1 cut(s) 763
BspTNI GGTCTC 3 cut(s) 126, 879, 1173
BsrBI CCGCTC 2 cut(s) 59, 328
BsrDI GCAATG 1 cut(s) 416
BsrFI RCCGGY 2 cut(s) 601, 854
BsrI ACTGG 4 cut(s) 569, 665, 727, 757
BssAI RCCGGY 2 cut(s) 601, 854
BssECI CCNNGG 4 cut(s) 191, 231, 252, 378
BssMI GATC 5 cut(s) 652, 802, 865, 925, 1048
BssNI GRCGYC 2 cut(s) 222, 285
BssT1I CCWWGG 2 cut(s) 231, 252
Bst2UI CCWGG 6 cut(s) 71, 193, 379, 607, 983, 1043
Bst4CI ACNGT 4 cut(s) 272, 643, 661, 907
Bst6I CTCTTC 2 cut(s) 506, 763
BstACI GRCGYC 2 cut(s) 222, 285
BstAPI GCANNNNNTGC 1 cut(s) 1162
BstBAI YACGTR 1 cut(s) 247
BstC8I GCNNGC 5 cut(s) 157, 238, 326, 603, 945
BstDEI CTNAG 8 cut(s) 51, 60, 290, 612, 786, 869, 948, 1060
BstDSI CCRYGG 1 cut(s) 231
BstEII GGTNACC 1 cut(s) 563
BstF5I GGATG 1 cut(s) 790
BstFNI CGCG 2 cut(s) 159, 219
BstHHI GCGC 1 cut(s) 219
BstKTI GATC 5 cut(s) 655, 805, 868, 928, 1051
BstMAI GTCTC 6 cut(s) 82, 126, 370, 879, 1173, 1187
BstMBI GATC 5 cut(s) 652, 802, 865, 925, 1048
BstMWI GCNNNNNNNGC 8 cut(s) 119, 122, 149, 152, 293, 383, 1038, 1162
BstNI CCWGG 6 cut(s) 71, 193, 379, 607, 983, 1043
BstPI GGTNACC 1 cut(s) 563
BstSCI CCNGG 9 cut(s) 69, 138, 191, 377, 559, 605, 693, 981, 1041
BstSLI GKGCMC 2 cut(s) 191, 298
BstUI CGCG 2 cut(s) 159, 219
BstV1I GCAGC 4 cut(s) 134, 187, 754, 804
BstX2I RGATCY 1 cut(s) 865
BstXI CCANNNNNNTGG 2 cut(s) 1149, 1152
BstYI RGATCY 1 cut(s) 865
Bsu36I CCTNAGG 1 cut(s) 290
BtgI CCRYGG 1 cut(s) 231
BtgZI GCGATG 2 cut(s) 340, 597
BtsCI GGATG 1 cut(s) 790
BtsIMutI CAGTG 2 cut(s) 666, 1014
BtuMI TCGCGA 1 cut(s) 159
Cac8I GCNNGC 5 cut(s) 157, 238, 326, 603, 945
CfoI GCGC 1 cut(s) 219
Cfr10I RCCGGY 2 cut(s) 601, 854
CpoI CGGWCCG 1 cut(s) 424
CseI GACGC 2 cut(s) 230, 293
CspI CGGWCCG 1 cut(s) 424
CviAII CATG 9 cut(s) 109, 232, 260, 304, 316, 589, 625, 923, 1024
DdeI CTNAG 8 cut(s) 51, 60, 290, 612, 786, 869, 948, 1060
DpnI GATC 5 cut(s) 654, 804, 867, 927, 1050
DpnII GATC 5 cut(s) 652, 802, 865, 925, 1048
DraIII CACNNNGTG 2 cut(s) 202, 1162
DriI GACNNNNNGTC 1 cut(s) 52
EaeI YGGCCR 3 cut(s) 249, 599, 603
Eam1104I CTCTTC 2 cut(s) 506, 763
Eam1105I GACNNNNNGTC 1 cut(s) 52
EarI CTCTTC 2 cut(s) 506, 763
Eco130I CCWWGG 2 cut(s) 231, 252
Eco24I GRGCYC 1 cut(s) 191
Eco31I GGTCTC 3 cut(s) 126, 879, 1173
Eco47I GGWCC 4 cut(s) 256, 424, 436, 893
Eco72I CACGTG 1 cut(s) 247
Eco81I CCTNAGG 1 cut(s) 290
Eco88I CYCGRG 2 cut(s) 117, 184
Eco91I GGTNACC 1 cut(s) 563
EcoO109I RGGNCCY 1 cut(s) 188
EcoO65I GGTNACC 1 cut(s) 563
EcoRII CCWGG 6 cut(s) 69, 191, 377, 605, 981, 1041
EcoT14I CCWWGG 2 cut(s) 231, 252
EcoT38I GRGCYC 1 cut(s) 191
ErhI CCWWGG 2 cut(s) 231, 252
Esp3I CGTCTC 1 cut(s) 82
FaeI CATG 9 cut(s) 112, 235, 263, 307, 319, 592, 628, 926, 1027
FaqI GGGAC 2 cut(s) 422, 916
FatI CATG 9 cut(s) 108, 231, 259, 303, 315, 588, 624, 922, 1023
FauI CCCGC 1 cut(s) 333
FauNDI CATATG 1 cut(s) 830
FbaI TGATCA 1 cut(s) 802
FokI GGATG 1 cut(s) 777
FriOI GRGCYC 1 cut(s) 191
FseI GGCCGGCC 1 cut(s) 605
FspBI CTAG 2 cut(s) 387, 1052
GlaI GCGC 1 cut(s) 218
GsaI CCCAGC 2 cut(s) 85, 903
GsuI CTGGAG 2 cut(s) 14, 53
HapII CCGG 6 cut(s) 129, 139, 560, 602, 695, 855
HgaI GACGC 2 cut(s) 230, 293
HhaI GCGC 1 cut(s) 219
Hin1I GRCGYC 2 cut(s) 222, 285
Hin1II CATG 9 cut(s) 112, 235, 263, 307, 319, 592, 628, 926, 1027
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HinfI GANTC 3 cut(s) 47, 53, 452
HpaII CCGG 6 cut(s) 129, 139, 560, 602, 695, 855
HphI GGTGA 3 cut(s) 284, 662, 1136
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 7 cut(s) 19, 52, 397, 424, 636, 807, 997
Hpy188III TCNNGA 7 cut(s) 31, 158, 331, 734, 839, 1052, 1103
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 4 cut(s) 224, 272, 287, 460
HpyAV CCTTC 1 cut(s) 1115
HpyCH4III ACNGT 4 cut(s) 272, 643, 661, 907
HpyCH4IV ACGT 2 cut(s) 102, 246
HpyCH4V TGCA 3 cut(s) 346, 1032, 1110
HpyF10VI GCNNNNNNNGC 8 cut(s) 119, 122, 149, 152, 293, 383, 1038, 1162
HpyF3I CTNAG 8 cut(s) 51, 60, 290, 612, 786, 869, 948, 1060
HpySE526I ACGT 2 cut(s) 102, 246
Hsp92I GRCGYC 2 cut(s) 222, 285
Hsp92II CATG 9 cut(s) 112, 235, 263, 307, 319, 592, 628, 926, 1027
HspAI GCGC 1 cut(s) 217
KroI GCCGGC 1 cut(s) 601
KroNI GCCGGC 1 cut(s) 603
Ksp22I TGATCA 1 cut(s) 802
Kzo9I GATC 5 cut(s) 652, 802, 865, 925, 1048
LguI GCTCTTC 1 cut(s) 763
LmnI GCTCC 3 cut(s) 69, 172, 183
Lsp1109I GCAGC 4 cut(s) 134, 187, 754, 804
LweI GCATC 2 cut(s) 799, 1074
MaeI CTAG 2 cut(s) 387, 1052
MaeII ACGT 2 cut(s) 102, 246
MaeIII GTNAC 5 cut(s) 204, 563, 821, 907, 1088
MalI GATC 5 cut(s) 654, 804, 867, 927, 1050
MbiI CCGCTC 2 cut(s) 59, 328
MboI GATC 5 cut(s) 652, 802, 865, 925, 1048
MboII GAAGA 2 cut(s) 523, 750
MflI RGATCY 1 cut(s) 865
MhlI GDGCHC 2 cut(s) 191, 298
MlsI TGGCCA 1 cut(s) 251
MluCI AATT 2 cut(s) 682, 1097
MluNI TGGCCA 1 cut(s) 251
MlyI GAGTC 3 cut(s) 41, 62, 446
Mox20I TGGCCA 1 cut(s) 251
MroNI GCCGGC 1 cut(s) 601
MroXI GAANNNNTTC 1 cut(s) 1073
MscI TGGCCA 1 cut(s) 251
MseI TTAA 1 cut(s) 744
MslI CAYNNNNRTG 2 cut(s) 936, 1147
Msp20I TGGCCA 1 cut(s) 251
MspA1I CMGCKG 1 cut(s) 899
MspI CCGG 6 cut(s) 129, 139, 560, 602, 695, 855
MspR9I CCNGG 9 cut(s) 71, 140, 193, 379, 561, 607, 695, 983, 1043
Mva1269I GAATGC 1 cut(s) 346
MvaI CCWGG 6 cut(s) 71, 193, 379, 607, 983, 1043
MvnI CGCG 2 cut(s) 159, 219
MwoI GCNNNNNNNGC 8 cut(s) 119, 122, 149, 152, 293, 383, 1038, 1162
NaeI GCCGGC 1 cut(s) 603
NciI CCSGG 3 cut(s) 140, 561, 695
NcoI CCATGG 1 cut(s) 231
NdeI CATATG 1 cut(s) 830
NdeII GATC 5 cut(s) 652, 802, 865, 925, 1048
NgoMIV GCCGGC 1 cut(s) 601
NlaIII CATG 9 cut(s) 112, 235, 263, 307, 319, 592, 628, 926, 1027
NlaIV GGNNCC 3 cut(s) 189, 190, 438
NmuCI GTSAC 2 cut(s) 821, 1088
NruI TCGCGA 1 cut(s) 159
OliI CACNNNNGTG 1 cut(s) 1147
PaeR7I CTCGAG 1 cut(s) 117
PciSI GCTCTTC 1 cut(s) 763
PctI GAATGC 1 cut(s) 346
PdiI GCCGGC 1 cut(s) 603
PdmI GAANNNNTTC 1 cut(s) 1073
PleI GAGTC 3 cut(s) 41, 61, 446
PmaCI CACGTG 1 cut(s) 247
PmlI CACGTG 1 cut(s) 247
PpsI GAGTC 3 cut(s) 41, 61, 446
Ppu21I YACGTR 1 cut(s) 247
PsiI TTATAA 1 cut(s) 575
Psp6I CCWGG 6 cut(s) 69, 191, 377, 605, 981, 1041
PspCI CACGTG 1 cut(s) 247
PspEI GGTNACC 1 cut(s) 563
PspFI CCCAGC 2 cut(s) 81, 899
PspGI CCWGG 6 cut(s) 69, 191, 377, 605, 981, 1041
PspN4I GGNNCC 3 cut(s) 189, 190, 438
PspOMI GGGCCC 1 cut(s) 187
PspXI VCTCGAGB 1 cut(s) 117
PsuI RGATCY 1 cut(s) 865
PvuII CAGCTG 1 cut(s) 899
RigI GGCCGGCC 1 cut(s) 605
RruI TCGCGA 1 cut(s) 159
RseI CAYNNNNRTG 2 cut(s) 936, 1147
Rsr2I CGGWCCG 1 cut(s) 424
RsrII CGGWCCG 1 cut(s) 424
SapI GCTCTTC 1 cut(s) 763
SaqAI TTAA 1 cut(s) 744
Sau3AI GATC 5 cut(s) 652, 802, 865, 925, 1048
SchI GAGTC 3 cut(s) 41, 62, 446
ScrFI CCNGG 9 cut(s) 71, 140, 193, 379, 561, 607, 695, 983, 1043
SduI GDGCHC 2 cut(s) 191, 298
SfaNI GCATC 2 cut(s) 799, 1074
Sfr274I CTCGAG 1 cut(s) 117
SinI GGWCC 4 cut(s) 256, 424, 436, 893
SlaI CTCGAG 1 cut(s) 117
SmiMI CAYNNNNRTG 2 cut(s) 936, 1147
SmlI CTYRAG 3 cut(s) 117, 734, 1036
SmoI CTYRAG 3 cut(s) 117, 734, 1036
Sse9I AATT 2 cut(s) 682, 1097
SspMI CTAG 2 cut(s) 387, 1052
StyD4I CCNGG 9 cut(s) 69, 138, 191, 377, 559, 605, 693, 981, 1041
StyI CCWWGG 2 cut(s) 231, 252
TaaI ACNGT 4 cut(s) 272, 643, 661, 907
TaiI ACGT 2 cut(s) 105, 249
TaqI TCGA 5 cut(s) 118, 267, 300, 450, 455
TasI AATT 2 cut(s) 682, 1097
TauI GCSGC 7 cut(s) 93, 116, 128, 146, 155, 324, 386
Tru1I TTAA 1 cut(s) 744
Tru9I TTAA 1 cut(s) 744
TscAI CASTG 2 cut(s) 666, 1021
TseFI GTSAC 2 cut(s) 821, 1088
TseI GCWGC 4 cut(s) 122, 175, 767, 817
Tsp45I GTSAC 2 cut(s) 821, 1088
TspDTI ATGAA 1 cut(s) 1209
TspGWI ACGGA 2 cut(s) 190, 473
TspRI CASTG 2 cut(s) 666, 1021
VpaK11BI GGWCC 4 cut(s) 256, 424, 436, 893
XapI RAATTY 1 cut(s) 1097
XbaI TCTAGA 1 cut(s) 1051
XcmI CCANNNNNNNNNTGG 1 cut(s) 1149
XhoI CTCGAG 1 cut(s) 117
XmnI GAANNNNTTC 1 cut(s) 1073
XspI CTAG 2 cut(s) 387, 1052
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.