Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005300

Physical Location & Seq

Genomic Coordinates Forward (+)

84197324 .. 84200604

Gene Structure 3281 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35282

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCTCATTGGCCGGCGAGGACAAAGTGGAATGACATGGATTACCTGATAAGAGTCGCCGGTGACCGGACGGTGCCGGTTGAGGTTGGGAAAAATTACTTGTACCCGGAGTGGAAGCAGGAGCTTATTACGTTTTCGCAGTTTCTTGAGAGGATTCGGGATAATGACTCTTCCTCTGGCGCGCCGAAGTATCTTGCTCAGCACTCATTGTTTGATCAGATAAACGAGCTGCGTGAGGACATATGTATTCCCGACTATTGTTGTGCCGGTGGTGGGGAGCTAAGGTCTCTAAATGCTTGGTTTGGTCCAGCTGGGACTGTAACCCCGTTACACCATGATCCACACCATAATGTGTTTGCGCAGGTAGTTGGAAAAAAGTATATAAGACTCTATCGTGCTTCATTGTCAGAGGAACTCTATCCACATACTGAAACCATGCTTTGCAACTCAAGTCAGGTTGATCTAGACAACATAGATGAGAAAGAATTCCCAGAGGTGCAGGACTTAGAATTTCTTGACTGCATATTAGAGGAAGGTGACATGCTTTATATCCCACCAAAGTGGTGGCACTATGTGCGGTCTCTGACAACAAGTATGTCAGTTAGCTTTTGGTGGAGTGATTATGACAGTTCAGCTATGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003700 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0007623 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008214 GO:0008276 GO:0008757 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010452 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016278 GO:0016279 GO:0016491 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032451 GO:0032452 GO:0034968 GO:0036211 GO:0042054 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0046975 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:0140110 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

214

Amino Acids

24.88

Weight (kDa)

4.8

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_8	PF13621	2 - 207	3.9e-44	Cupin-like domain
JmjC_2	PF08007	98 - 203	1.9e-12	JmjC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20810 AT3G20810 AT3G20810 AT3G20810 AT3G20810
fragaria_vesca	FvH4_3g43600
malus_domestica	MD03G1020700.v1.1 MD11G1022300.v1.1
prunus_persica	Prupe.6G015700_v2.0.a1
pyrus_communis	pycom03g01760 pycom11g01790
rosa_chinensis	RchiOBHm_Chr5g0078171 RchiOBHm_Chr5g0078191 RchiOBHm_Chr5g0078281 RchiOBHm_Chr5g0078291
rosa_laevigata	RLG00000036759 RLG00000036763
rosa_multiflora	Rmu_sc0000631.1_g000035 Rmu_sc0005194.1_g000006
rosa_roxburghii	Rroxscaffold_1G00003960
rosa_rugosa	Rorug03G0196500 Rorug05G0459500.1 Rorug05G0459800
rosa_samantha	Rh5AG513800 Rh5BG536800 Rh5CG560200 Rh5DG548400 Rh6BG257500
rosa_wichuraiana	Rw5G047680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	360
Acc36I	ACCTGC	1 cut(s)	352
AccB1I	GGYRCC	1 cut(s)	73
AccII	CGCG	1 cut(s)	182
AciI	CCGC	1 cut(s)	577
AclWI	GGATC	1 cut(s)	332
AcoI	YGGCCR	1 cut(s)	11
AcsI	RAATTY	2 cut(s)	485, 509
AdeI	CACNNNGTG	1 cut(s)	574
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	2 cut(s)	66, 273
AleI	CACNNNNGTG	1 cut(s)	559
AluBI	AGCT	6 cut(s)	124, 229, 280, 311, 606, 635
AluI	AGCT	6 cut(s)	124, 229, 280, 311, 606, 635
Alw26I	GTCTC	2 cut(s)	291, 585
AlwI	GGATC	1 cut(s)	332
AoxI	GGCC	1 cut(s)	11
ApeKI	GCWGC	1 cut(s)	229
ApoI	RAATTY	2 cut(s)	485, 509
AscI	GGCGCGCC	1 cut(s)	180
Asp700I	GAANNNNTTC	1 cut(s)	485
AspLEI	GCGC	3 cut(s)	182, 184, 361
AspS9I	GGNCC	1 cut(s)	305
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	2 cut(s)	74, 548
AvaII	GGWCC	1 cut(s)	305
BanI	GGYRCC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	216
BclI	TGATCA	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	107
BcoDI	GTCTC	2 cut(s)	291, 585
BfaI	CTAG	1 cut(s)	464
BfuAI	ACCTGC	1 cut(s)	352
BisI	GCNGC	1 cut(s)	230
BlpI	GCTNAGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	231
Bme1390I	CCNGG	1 cut(s)	107
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	107
Bpu10I	CCTNAGC	1 cut(s)	281
Bpu1102I	GCTNAGC	1 cut(s)	198
BpuEI	CTTGAG	2 cut(s)	167, 433
BpuMI	CCSGG	1 cut(s)	107
BsaI	GGTCTC	2 cut(s)	291, 585
BsaWI	WCCGGW	1 cut(s)	66
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 273
Bse118I	RCCGGY	4 cut(s)	13, 59, 76, 266
BseLI	CCNNNNNNNGG	2 cut(s)	66, 273
BseMII	CTCAG	1 cut(s)	212
BsePI	GCGCGC	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	216
BseYI	CCCAGC	1 cut(s)	311
BsgI	GTGCAG	1 cut(s)	518
Bsh1236I	CGCG	1 cut(s)	182
BshFI	GGCC	1 cut(s)	13
BshNI	GGYRCC	1 cut(s)	73
BsiSI	CCGG	6 cut(s)	14, 60, 67, 77, 107, 267
BslFI	GGGAC	1 cut(s)	328
BslI	CCNNNNNNNGG	2 cut(s)	66, 273
BsmAI	GTCTC	2 cut(s)	291, 585
BsmFI	GGGAC	1 cut(s)	328
BsnI	GGCC	1 cut(s)	13
Bso31I	GGTCTC	2 cut(s)	291, 585
Bsp143I	GATC	3 cut(s)	214, 337, 460
Bsp1720I	GCTNAGC	1 cut(s)	198
BspACI	CCGC	1 cut(s)	577
BspANI	GGCC	1 cut(s)	13
BspCNI	CTCAG	1 cut(s)	211
BspFNI	CGCG	1 cut(s)	182
BspLI	GGNNCC	1 cut(s)	75
BspMI	ACCTGC	1 cut(s)	352
BspPI	GGATC	1 cut(s)	332
BspT107I	GGYRCC	1 cut(s)	73
BspTNI	GGTCTC	2 cut(s)	291, 585
BsrFI	RCCGGY	4 cut(s)	13, 59, 76, 266
BssAI	RCCGGY	4 cut(s)	13, 59, 76, 266
BssHII	GCGCGC	1 cut(s)	180
BssMI	GATC	3 cut(s)	214, 337, 460
Bst4CI	ACNGT	3 cut(s)	73, 319, 629
Bst6I	CTCTTC	1 cut(s)	175
BstAPI	GCANNNNNTGC	1 cut(s)	574
BstC8I	GCNNGC	2 cut(s)	15, 182
BstDEI	CTNAG	3 cut(s)	198, 281, 505
BstEII	GGTNACC	1 cut(s)	62
BstFNI	CGCG	1 cut(s)	182
BstHHI	GCGC	3 cut(s)	182, 184, 361
BstKTI	GATC	3 cut(s)	217, 340, 463
BstMAI	GTCTC	2 cut(s)	291, 585
BstMBI	GATC	3 cut(s)	214, 337, 460
BstMWI	GCNNNNNNNGC	1 cut(s)	574
BstNSI	RCATGY	1 cut(s)	544
BstPI	GGTNACC	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	105
BstUI	CGCG	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	216
BstXI	CCANNNNNNTGG	2 cut(s)	561, 564
BsuRI	GGCC	1 cut(s)	13
BveI	ACCTGC	1 cut(s)	352
Cac8I	GCNNGC	2 cut(s)	15, 182
CfoI	GCGC	3 cut(s)	182, 184, 361
Cfr10I	RCCGGY	4 cut(s)	13, 59, 76, 266
Cfr13I	GGNCC	1 cut(s)	305
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	4 cut(s)	37, 335, 436, 541
CviJI	RGCY	8 cut(s)	5, 13, 124, 229, 280, 311, 606, 635
CviKI_1	RGCY	8 cut(s)	5, 13, 124, 229, 280, 311, 606, 635
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	3 cut(s)	198, 281, 505
DpnI	GATC	3 cut(s)	216, 339, 462
DpnII	GATC	3 cut(s)	214, 337, 460
DraIII	CACNNNGTG	1 cut(s)	574
EaeI	YGGCCR	1 cut(s)	11
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
Eco31I	GGTCTC	2 cut(s)	291, 585
Eco47I	GGWCC	1 cut(s)	305
Eco91I	GGTNACC	1 cut(s)	62
EcoO65I	GGTNACC	1 cut(s)	62
EcoRI	GAATTC	1 cut(s)	485
FaeI	CATG	4 cut(s)	40, 338, 439, 544
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	4 cut(s)	36, 334, 435, 540
FauNDI	CATATG	1 cut(s)	242
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	1 cut(s)	230
Fsp4HI	GCNGC	1 cut(s)	230
FspBI	CTAG	1 cut(s)	464
FspI	TGCGCA	1 cut(s)	360
GlaI	GCGC	3 cut(s)	181, 183, 360
GluI	GCNGC	1 cut(s)	230
GsaI	CCCAGC	1 cut(s)	315
HaeIII	GGCC	1 cut(s)	13
HapII	CCGG	6 cut(s)	14, 60, 67, 77, 107, 267
HhaI	GCGC	3 cut(s)	182, 184, 361
Hin1II	CATG	4 cut(s)	40, 338, 439, 544
Hin6I	GCGC	3 cut(s)	180, 182, 359
HinP1I	GCGC	3 cut(s)	180, 182, 359
HinfI	GANTC	4 cut(s)	54, 154, 167, 387
HpaII	CCGG	6 cut(s)	14, 60, 67, 77, 107, 267
HphI	GGTGA	2 cut(s)	74, 548
Hpy188I	TCNGA	3 cut(s)	219, 409, 585
Hpy188III	TCNNGA	6 cut(s)	146, 158, 251, 464, 515, 642
HpyAV	CCTTC	1 cut(s)	527
HpyCH4III	ACNGT	3 cut(s)	73, 319, 629
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	3 cut(s)	444, 499, 522
HpyF10VI	GCNNNNNNNGC	1 cut(s)	574
HpyF3I	CTNAG	3 cut(s)	198, 281, 505
HpySE526I	ACGT	1 cut(s)	131
Hsp92II	CATG	4 cut(s)	40, 338, 439, 544
HspAI	GCGC	3 cut(s)	180, 182, 359
KroI	GCCGGC	1 cut(s)	13
KroNI	GCCGGC	1 cut(s)	15
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	3 cut(s)	214, 337, 460
LmnI	GCTCC	2 cut(s)	121, 277
Lsp1109I	GCAGC	1 cut(s)	216
MaeI	CTAG	1 cut(s)	464
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	4 cut(s)	62, 319, 327, 536
MalI	GATC	3 cut(s)	216, 339, 462
MboI	GATC	3 cut(s)	214, 337, 460
MboII	GAAGA	1 cut(s)	162
MluCI	AATT	3 cut(s)	94, 485, 509
MlyI	GAGTC	3 cut(s)	63, 161, 381
MmeI	TCCRAC	1 cut(s)	349
MnlI	CCTC	8 cut(s)	12, 76, 144, 184, 229, 403, 487, 523
MroNI	GCCGGC	1 cut(s)	13
MroXI	GAANNNNTTC	1 cut(s)	485
MslI	CAYNNNNRTG	2 cut(s)	348, 559
MspA1I	CMGCKG	1 cut(s)	311
MspI	CCGG	6 cut(s)	14, 60, 67, 77, 107, 267
MspR9I	CCNGG	1 cut(s)	107
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	1 cut(s)	574
NaeI	GCCGGC	1 cut(s)	15
NciI	CCSGG	1 cut(s)	107
NdeI	CATATG	1 cut(s)	242
NdeII	GATC	3 cut(s)	214, 337, 460
NgoMIV	GCCGGC	1 cut(s)	13
NlaIII	CATG	4 cut(s)	40, 338, 439, 544
NlaIV	GGNNCC	1 cut(s)	75
NmuCI	GTSAC	2 cut(s)	62, 536
NsbI	TGCGCA	1 cut(s)	360
NspI	RCATGY	1 cut(s)	544
OliI	CACNNNNGTG	1 cut(s)	559
PalAI	GGCGCGCC	1 cut(s)	180
PauI	GCGCGC	1 cut(s)	180
PdiI	GCCGGC	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	485
PfeI	GAWTC	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	231
PleI	GAGTC	3 cut(s)	62, 161, 381
PpsI	GAGTC	3 cut(s)	62, 161, 381
PspEI	GGTNACC	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	311
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	305
PteI	GCGCGC	1 cut(s)	180
PvuII	CAGCTG	1 cut(s)	311
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
RseI	CAYNNNNRTG	2 cut(s)	348, 559
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	3 cut(s)	214, 337, 460
Sau96I	GGNCC	1 cut(s)	305
SchI	GAGTC	3 cut(s)	63, 161, 381
ScrFI	CCNGG	1 cut(s)	107
SgrAI	CRCCGGYG	1 cut(s)	59
SgsI	GGCGCGCC	1 cut(s)	180
SinI	GGWCC	1 cut(s)	305
SmiMI	CAYNNNNRTG	2 cut(s)	348, 559
SmlI	CTYRAG	2 cut(s)	146, 448
SmoI	CTYRAG	2 cut(s)	146, 448
Sse9I	AATT	3 cut(s)	94, 485, 509
SsiI	CCGC	1 cut(s)	577
SspMI	CTAG	1 cut(s)	464
StyD4I	CCNGG	1 cut(s)	105
TaaI	ACNGT	3 cut(s)	73, 319, 629
TaiI	ACGT	1 cut(s)	134
TasI	AATT	3 cut(s)	94, 485, 509
TfiI	GAWTC	1 cut(s)	154
TseFI	GTSAC	2 cut(s)	62, 536
TseI	GCWGC	1 cut(s)	229
Tsp45I	GTSAC	2 cut(s)	62, 536
TspDTI	ATGAA	1 cut(s)	390
VpaK11BI	GGWCC	1 cut(s)	305
XapI	RAATTY	2 cut(s)	485, 509
XbaI	TCTAGA	1 cut(s)	463
XceI	RCATGY	1 cut(s)	544
XcmI	CCANNNNNNNNNTGG	1 cut(s)	561
XmnI	GAANNNNTTC	1 cut(s)	485
XspI	CTAG	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.