Rmu_sc0000631.1_g000035

lysine-specific demethylase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000631.1
Physical Location & Seq
Reverse (-)
193046 .. 195893
2848 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000631.1_g000035.1.cds

Sequence Viewer

Length: 1257 bp
atggccaactccgaccaccaccaccaccaccaccaccaccaccaccaccaccacctccccaccccgaccctcgactccgagtcctccacgctcctccacaccctctccgagcacggcggctacgcctacgtcagcatggccacacgcgccgccgccggcgacgtccgggccgcggaggccgctcgcgagatggcctgggagcagctccactccggcccctggcactccgtcctcccagtctggcgcgacgcctacgcaatggcctgcctccacgtggccaagctccacttcgccgccgctgagttcaccgacgccctccgcgccctcgacatgggcctcctcatgggcggcccgctcttcaaatcggacctccactccgccgtgactaaagtctccgctaaatccagagccgccgctagggtttccgaacaaaacggccccaaattggaccgccgtctggtccgtgacgacctcaaagcaacggagatgattggggttttgcctccaaaatcattatcttgcaaaacggttgtgaagaagtctggtctatctttggaagggtttttaagagaacatttcttaccgggatcgccggttattttgactgattgtatggctcattggccggcgagaacgaagtggaatgacatggattacctgataagagttgccggtgaccggacggtgccggttgaggttgggaaaaattacttgtatccggagtggaagcaggagcttattacgttttcgcagtttcttgagaggattcggggtaatgattcttcatctgttgcgccgacatatcttgctcagcactcattgtttgatcagataaacgagttgcgtgaggacatatgtattcccgactattgttgtgctggtggtggggaactaaagtctctaaatgcttggtttggtccggctgggactgtaaccccattacaccatgatccgcaccataatgtgtttgcacaggtagttggaaaaaagtatataaggctctattgtgcttcattgtcagaggaactctatccacatactgaaaccatgctttgcaactcaagtcaggttgatctggacaatgtagatgagaaagaattcccggaggtgcaggacttagaatttcttgactgcatattagaggaaggtgacatgctttatatcccgccaaagtggtggcactatgtgcggtctctgacaacaagtatgtcagttagcttttggtggagtgattatgacagttcagctatgtcttga
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

418

Amino Acids

47.1

Weight (kDa)

5.95

Isoelectric Point (pI)

41.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 685
AccBSI CCGCTC 2 cut(s) 182, 355
AccII CGCG 5 cut(s) 147, 173, 186, 246, 321
AccIII TCCGGA 1 cut(s) 718
AclWI GGATC 2 cut(s) 595, 944
AcoI YGGCCR 4 cut(s) 3, 138, 276, 623
AcsI RAATTY 2 cut(s) 1097, 1121
AcvI CACGTG 1 cut(s) 274
AcyI GRCGYC 3 cut(s) 162, 249, 312
AdeI CACNNNGTG 1 cut(s) 1186
AfiI CCNNNNNNNGG 9 cut(s) 172, 219, 274, 331, 343, 417, 445, 457, 678
AgsI TTSAA 1 cut(s) 361
AhdI GACNNNNNGTC 1 cut(s) 79
AjnI CCWGG 2 cut(s) 194, 218
AjuI GAANNNNNNNTTGG 2 cut(s) 272, 304
AluBI AGCT 5 cut(s) 205, 283, 736, 1218, 1247
AluI AGCT 5 cut(s) 205, 283, 736, 1218, 1247
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 3 cut(s) 397, 903, 1197
AlwI GGATC 2 cut(s) 595, 944
Aor13HI TCCGGA 1 cut(s) 718
ApeKI GCWGC 1 cut(s) 202
ApoI RAATTY 2 cut(s) 1097, 1121
Asp700I GAANNNNTTC 1 cut(s) 1097
AspLEI GCGC 4 cut(s) 149, 246, 323, 796
AspS9I GGNCC 9 cut(s) 168, 215, 334, 350, 367, 437, 448, 460, 917
AsuC2I CCSGG 3 cut(s) 167, 585, 1103
AsuHPI GGTGA 3 cut(s) 298, 686, 1160
AvaII GGWCC 4 cut(s) 367, 448, 460, 917
BalI TGGCCA 3 cut(s) 5, 140, 278
BanI GGYRCC 1 cut(s) 685
BarI GAAGNNNNNNTAC 2 cut(s) 766, 798
BbrPI CACGTG 1 cut(s) 274
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 214
BccI CCATC 1 cut(s) 184
BceAI ACGGC 4 cut(s) 130, 365, 438, 451
BciT130I CCWGG 2 cut(s) 196, 220
BciVI GTATCC 1 cut(s) 726
BclI TGATCA 1 cut(s) 826
BcnI CCSGG 3 cut(s) 167, 585, 1103
BcoDI GTCTC 3 cut(s) 397, 903, 1197
BfaI CTAG 1 cut(s) 417
BfuI GTATCC 1 cut(s) 726
BglI GCCNNNNNGGC 1 cut(s) 176
BlpI GCTNAGC 1 cut(s) 810
Bme1390I CCNGG 5 cut(s) 167, 196, 220, 585, 1103
Bme18I GGWCC 4 cut(s) 367, 448, 460, 917
BmeRI GACNNNNNGTC 1 cut(s) 79
BmgT120I GGNCC 9 cut(s) 168, 215, 334, 350, 367, 437, 448, 460, 917
BmiI GGNNCC 3 cut(s) 217, 439, 687
BmrFI CCNGG 5 cut(s) 167, 196, 220, 585, 1103
BmrI ACTGGG 1 cut(s) 230
BmuI ACTGGG 1 cut(s) 230
BoxI GACNNNNGTC 2 cut(s) 389, 453
Bpu1102I GCTNAGC 1 cut(s) 810
BpuEI CTTGAG 2 cut(s) 779, 1045
BpuMI CCSGG 3 cut(s) 167, 585, 1103
BsaAI YACGTR 1 cut(s) 274
BsaHI GRCGYC 3 cut(s) 162, 249, 312
BsaI GGTCTC 1 cut(s) 1197
BsaJI CCNNGG 3 cut(s) 171, 195, 218
BsaWI WCCGGW 2 cut(s) 678, 718
BsaXI ACNNNNNCTCC 4 cut(s) 89, 119, 359, 389
Bsc4I CCNNNNNNNGG 9 cut(s) 172, 219, 274, 331, 343, 417, 445, 457, 678
Bse118I RCCGGY 5 cut(s) 155, 592, 625, 671, 688
Bse1I ACTGG 1 cut(s) 236
Bse3DI GCAATG 1 cut(s) 264
BseAI TCCGGA 1 cut(s) 718
BseBI CCWGG 2 cut(s) 196, 220
BseDI CCNNGG 3 cut(s) 171, 195, 218
BseLI CCNNNNNNNGG 9 cut(s) 172, 219, 274, 331, 343, 417, 445, 457, 678
BseMI GCAATG 1 cut(s) 264
BseMII CTCAG 2 cut(s) 291, 824
BseNI ACTGG 1 cut(s) 236
BseRI GAGGAG 2 cut(s) 83, 329
BseXI GCAGC 1 cut(s) 214
BseYI CCCAGC 1 cut(s) 923
BsgI GTGCAG 1 cut(s) 1130
Bsh1236I CGCG 5 cut(s) 147, 173, 186, 246, 321
BshNI GGYRCC 1 cut(s) 685
BsiHKAI GWGCWC 1 cut(s) 114
BslFI GGGAC 1 cut(s) 940
BslI CCNNNNNNNGG 9 cut(s) 172, 219, 274, 331, 343, 417, 445, 457, 678
BsmAI GTCTC 3 cut(s) 397, 903, 1197
BsmFI GGGAC 1 cut(s) 940
Bso31I GGTCTC 1 cut(s) 1197
Bsp1286I GDGCHC 1 cut(s) 114
Bsp13I TCCGGA 1 cut(s) 718
Bsp143I GATC 4 cut(s) 587, 826, 949, 1072
Bsp1720I GCTNAGC 1 cut(s) 810
Bsp68I TCGCGA 1 cut(s) 186
BspCNI CTCAG 2 cut(s) 292, 823
BspEI TCCGGA 1 cut(s) 718
BspFNI CGCG 5 cut(s) 147, 173, 186, 246, 321
BspLI GGNNCC 3 cut(s) 217, 439, 687
BspPI GGATC 2 cut(s) 595, 944
BspQI GCTCTTC 1 cut(s) 362
BspT107I GGYRCC 1 cut(s) 685
BspTNI GGTCTC 1 cut(s) 1197
BsrBI CCGCTC 2 cut(s) 182, 355
BsrDI GCAATG 1 cut(s) 264
BsrFI RCCGGY 5 cut(s) 155, 592, 625, 671, 688
BsrI ACTGG 1 cut(s) 236
BssAI RCCGGY 5 cut(s) 155, 592, 625, 671, 688
BssECI CCNNGG 3 cut(s) 171, 195, 218
BssMI GATC 4 cut(s) 587, 826, 949, 1072
BssNI GRCGYC 3 cut(s) 162, 249, 312
Bst2UI CCWGG 2 cut(s) 196, 220
Bst4CI ACNGT 4 cut(s) 529, 685, 931, 1241
Bst6I CTCTTC 1 cut(s) 362
BstACI GRCGYC 3 cut(s) 162, 249, 312
BstAPI GCANNNNNTGC 1 cut(s) 1186
BstBAI YACGTR 1 cut(s) 274
BstC8I GCNNGC 5 cut(s) 157, 184, 265, 353, 627
BstDEI CTNAG 3 cut(s) 300, 810, 1117
BstDSI CCRYGG 1 cut(s) 171
BstEII GGTNACC 1 cut(s) 674
BstFNI CGCG 5 cut(s) 147, 173, 186, 246, 321
BstHHI GCGC 4 cut(s) 149, 246, 323, 796
BstKTI GATC 4 cut(s) 590, 829, 952, 1075
BstMAI GTCTC 3 cut(s) 397, 903, 1197
BstMBI GATC 4 cut(s) 587, 826, 949, 1072
BstMWI GCNNNNNNNGC 5 cut(s) 146, 176, 179, 320, 1186
BstNI CCWGG 2 cut(s) 196, 220
BstNSI RCATGY 1 cut(s) 1156
BstPAI GACNNNNGTC 2 cut(s) 389, 453
BstPI GGTNACC 1 cut(s) 674
BstSCI CCNGG 5 cut(s) 165, 194, 218, 583, 1101
BstUI CGCG 5 cut(s) 147, 173, 186, 246, 321
BstV1I GCAGC 1 cut(s) 214
BstXI CCANNNNNNTGG 1 cut(s) 1176
BsuI GTATCC 1 cut(s) 726
BtgI CCRYGG 1 cut(s) 171
BtuMI TCGCGA 1 cut(s) 186
Cac8I GCNNGC 5 cut(s) 157, 184, 265, 353, 627
CfoI GCGC 4 cut(s) 149, 246, 323, 796
Cfr10I RCCGGY 5 cut(s) 155, 592, 625, 671, 688
Cfr13I GGNCC 9 cut(s) 168, 215, 334, 350, 367, 437, 448, 460, 917
Cfr42I CCGCGG 1 cut(s) 174
CseI GACGC 2 cut(s) 257, 320
CviAII CATG 7 cut(s) 136, 331, 343, 649, 947, 1048, 1153
DdeI CTNAG 3 cut(s) 300, 810, 1117
DpnI GATC 4 cut(s) 589, 828, 951, 1074
DpnII GATC 4 cut(s) 587, 826, 949, 1072
DraIII CACNNNGTG 1 cut(s) 1186
DriI GACNNNNNGTC 1 cut(s) 79
EaeI YGGCCR 4 cut(s) 3, 138, 276, 623
Eam1104I CTCTTC 1 cut(s) 362
Eam1105I GACNNNNNGTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 362
EciI GGCGGA 1 cut(s) 367
Eco31I GGTCTC 1 cut(s) 1197
Eco47I GGWCC 4 cut(s) 367, 448, 460, 917
Eco72I CACGTG 1 cut(s) 274
Eco91I GGTNACC 1 cut(s) 674
EcoO65I GGTNACC 1 cut(s) 674
EcoRI GAATTC 1 cut(s) 1097
EcoRII CCWGG 2 cut(s) 194, 218
FaeI CATG 7 cut(s) 139, 334, 346, 652, 950, 1051, 1156
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FaqI GGGAC 1 cut(s) 940
FatI CATG 7 cut(s) 135, 330, 342, 648, 946, 1047, 1152
FauI CCCGC 2 cut(s) 360, 1173
FauNDI CATATG 1 cut(s) 854
FbaI TGATCA 1 cut(s) 826
FspBI CTAG 1 cut(s) 417
GlaI GCGC 4 cut(s) 148, 245, 322, 795
GsaI CCCAGC 1 cut(s) 927
HgaI GACGC 2 cut(s) 257, 320
HhaI GCGC 4 cut(s) 149, 246, 323, 796
Hin1I GRCGYC 3 cut(s) 162, 249, 312
Hin1II CATG 7 cut(s) 139, 334, 346, 652, 950, 1051, 1156
Hin6I GCGC 4 cut(s) 147, 244, 321, 794
HinP1I GCGC 4 cut(s) 147, 244, 321, 794
HinfI GANTC 4 cut(s) 74, 80, 766, 779
HphI GGTGA 3 cut(s) 298, 686, 1160
Hpy166II GTNNAC 1 cut(s) 306
Hpy188I TCNGA 8 cut(s) 13, 79, 109, 367, 427, 831, 1021, 1197
Hpy188III TCNNGA 8 cut(s) 185, 405, 719, 758, 863, 1076, 1127, 1254
Hpy8I GTNNAC 1 cut(s) 306
Hpy99I CGWCG 3 cut(s) 164, 251, 314
HpyAV CCTTC 2 cut(s) 551, 1139
HpyCH4III ACNGT 4 cut(s) 529, 685, 931, 1241
HpyCH4IV ACGT 4 cut(s) 129, 162, 273, 743
HpyCH4V TGCA 5 cut(s) 522, 971, 1056, 1111, 1134
HpyF10VI GCNNNNNNNGC 5 cut(s) 146, 176, 179, 320, 1186
HpyF3I CTNAG 3 cut(s) 300, 810, 1117
HpySE526I ACGT 4 cut(s) 129, 162, 273, 743
Hsp92I GRCGYC 3 cut(s) 162, 249, 312
Hsp92II CATG 7 cut(s) 139, 334, 346, 652, 950, 1051, 1156
HspAI GCGC 4 cut(s) 147, 244, 321, 794
Kpn2I TCCGGA 1 cut(s) 718
KroI GCCGGC 2 cut(s) 155, 625
KroNI GCCGGC 2 cut(s) 157, 627
Ksp22I TGATCA 1 cut(s) 826
KspI CCGCGG 1 cut(s) 174
Kzo9I GATC 4 cut(s) 587, 826, 949, 1072
LguI GCTCTTC 1 cut(s) 362
LmnI GCTCC 5 cut(s) 96, 199, 210, 288, 733
Lsp1109I GCAGC 1 cut(s) 214
MaeI CTAG 1 cut(s) 417
MaeII ACGT 4 cut(s) 129, 162, 273, 743
MaeIII GTNAC 5 cut(s) 382, 464, 674, 931, 1148
MalI GATC 4 cut(s) 589, 828, 951, 1074
MbiI CCGCTC 2 cut(s) 182, 355
MboI GATC 4 cut(s) 587, 826, 949, 1072
MboII GAAGA 3 cut(s) 349, 547, 774
MhlI GDGCHC 1 cut(s) 114
MlsI TGGCCA 3 cut(s) 5, 140, 278
MluCI AATT 4 cut(s) 443, 706, 1097, 1121
MluNI TGGCCA 3 cut(s) 5, 140, 278
MlyI GAGTC 2 cut(s) 68, 89
MmeI TCCRAC 2 cut(s) 36, 961
Mox20I TGGCCA 3 cut(s) 5, 140, 278
MreI CGCCGGCG 1 cut(s) 155
MroI TCCGGA 1 cut(s) 718
MroNI GCCGGC 2 cut(s) 155, 625
MroXI GAANNNNTTC 1 cut(s) 1097
MscI TGGCCA 3 cut(s) 5, 140, 278
MseI TTAA 1 cut(s) 566
MslI CAYNNNNRTG 1 cut(s) 960
Msp20I TGGCCA 3 cut(s) 5, 140, 278
MspA1I CMGCKG 2 cut(s) 173, 299
MspR9I CCNGG 5 cut(s) 167, 196, 220, 585, 1103
MvaI CCWGG 2 cut(s) 196, 220
MvnI CGCG 5 cut(s) 147, 173, 186, 246, 321
MwoI GCNNNNNNNGC 5 cut(s) 146, 176, 179, 320, 1186
NaeI GCCGGC 2 cut(s) 157, 627
NciI CCSGG 3 cut(s) 167, 585, 1103
NdeI CATATG 1 cut(s) 854
NdeII GATC 4 cut(s) 587, 826, 949, 1072
NgoMIV GCCGGC 2 cut(s) 155, 625
NlaIII CATG 7 cut(s) 139, 334, 346, 652, 950, 1051, 1156
NlaIV GGNNCC 3 cut(s) 217, 439, 687
NmuCI GTSAC 4 cut(s) 382, 464, 674, 1148
NruI TCGCGA 1 cut(s) 186
NspI RCATGY 1 cut(s) 1156
PciSI GCTCTTC 1 cut(s) 362
PdiI GCCGGC 2 cut(s) 157, 627
PdmI GAANNNNTTC 1 cut(s) 1097
PfeI GAWTC 2 cut(s) 766, 779
PfoI TCCNGGA 1 cut(s) 1101
PleI GAGTC 2 cut(s) 68, 88
PmaCI CACGTG 1 cut(s) 274
PmlI CACGTG 1 cut(s) 274
PpsI GAGTC 2 cut(s) 68, 88
Ppu21I YACGTR 1 cut(s) 274
PshAI GACNNNNGTC 2 cut(s) 389, 453
Psp6I CCWGG 2 cut(s) 194, 218
PspCI CACGTG 1 cut(s) 274
PspEI GGTNACC 1 cut(s) 674
PspFI CCCAGC 1 cut(s) 923
PspGI CCWGG 2 cut(s) 194, 218
PspN4I GGNNCC 3 cut(s) 217, 439, 687
PspPI GGNCC 9 cut(s) 168, 215, 334, 350, 367, 437, 448, 460, 917
PsrI GAACNNNNNNTAC 2 cut(s) 564, 596
RruI TCGCGA 1 cut(s) 186
RseI CAYNNNNRTG 1 cut(s) 960
SacII CCGCGG 1 cut(s) 174
SapI GCTCTTC 1 cut(s) 362
SaqAI TTAA 1 cut(s) 566
Sau3AI GATC 4 cut(s) 587, 826, 949, 1072
Sau96I GGNCC 9 cut(s) 168, 215, 334, 350, 367, 437, 448, 460, 917
SchI GAGTC 2 cut(s) 68, 89
ScrFI CCNGG 5 cut(s) 167, 196, 220, 585, 1103
SduI GDGCHC 1 cut(s) 114
SfiI GGCCNNNNNGGCC 1 cut(s) 176
Sfr303I CCGCGG 1 cut(s) 174
SgrAI CRCCGGYG 1 cut(s) 155
SgrBI CCGCGG 1 cut(s) 174
SinI GGWCC 4 cut(s) 367, 448, 460, 917
SmiMI CAYNNNNRTG 1 cut(s) 960
SmlI CTYRAG 2 cut(s) 758, 1060
SmoI CTYRAG 2 cut(s) 758, 1060
Sse9I AATT 4 cut(s) 443, 706, 1097, 1121
SspMI CTAG 1 cut(s) 417
StyD4I CCNGG 5 cut(s) 165, 194, 218, 583, 1101
TaaI ACNGT 4 cut(s) 529, 685, 931, 1241
TaiI ACGT 4 cut(s) 132, 165, 276, 746
TaqI TCGA 2 cut(s) 72, 327
TasI AATT 4 cut(s) 443, 706, 1097, 1121
TfiI GAWTC 2 cut(s) 766, 779
Tru1I TTAA 1 cut(s) 566
Tru9I TTAA 1 cut(s) 566
TseFI GTSAC 4 cut(s) 382, 464, 674, 1148
TseI GCWGC 1 cut(s) 202
Tsp45I GTSAC 4 cut(s) 382, 464, 674, 1148
TspDTI ATGAA 2 cut(s) 774, 1002
TspGWI ACGGA 3 cut(s) 217, 452, 497
VpaK11BI GGWCC 4 cut(s) 367, 448, 460, 917
XapI RAATTY 2 cut(s) 1097, 1121
XceI RCATGY 1 cut(s) 1156
XmnI GAANNNNTTC 1 cut(s) 1097
XspI CTAG 1 cut(s) 417
ZraI GACGTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.