Rh5AG513800

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0005300
Physical Location & Seq
Forward (+)
86829082 .. 86832884
3803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG513800.1

Sequence Viewer

Length: 969 bp
ATGGCCAACTCCGACCACCACCACCACCTCCTCCCCACCCCGACCCTCGACTCCGAGTCCTCCACGCTCCTCCACACCCTCTCCGAGCACGGCGGCTACGCCTACGTCAGCATGGCCACACGCGCCGCCGCCGGCGACGTCCGCGCAGCGGAGGCCGCTCGCGAGATGGCCTGGGAGCAGCTCCACTCCGGCCCCTGGCACTCCGTCCTCCCCGTCTGGCGCGACGCCTACGCAATGGCCTGCCTCCACGTCGCCAGGCTCCACTTCGCCGCCGCTGAGTTCACCGACGCCCTACGGGCCCTCGACATGGGCCTCCTCATGGGCGGCCCGCTTTTCAAATCGGACCTCCACTCCGCTGTGACTAAAGTCTCCGCTAAATCCAGGCCGGCCGCCGCTAGGGTTTCCGAACAAAACGGCCCCAATTTGGACCGCCGATTGGTCCGTGACGACCTCAAAGCAACGGAGATGCTTGGAGTTTTGCCTCCAAAATCACTATCTTGTAAAACGGTTGTGAAGAAGTCTGGTCTATCTTTGGAAGGGTTTTTAAGAGAACATTTCTTACCGGGATCGCCGGTTATTTTGACTGATTGTATGGCTCATTGGCCGGCGAGGGCGAAGTGGAATGACATGGATTACCTGACAAGAGTTGCCGGTGACCGGACGGTGCCGGTTGAGGTTGGGAAAAATTACTTGTATCCGGAGTGGAAGCAGGAGCTTATTACTTTTTCGCAGTTTCTTGAGAGGATTCGCGGTAATGACTCTTCCTCTGGTGCGCCGACGTATCTTGCTCAGCACTCATTGTTTGATCAGATAAACGAGCTGCGTGAGGACATATGTATTCCCGACTATTGTTGTGCTGGTGGTGGGGAGCTAAGGTCTCTAAATGCTTGGTTTGGTCCGGCTGGGACTGTAACCCCATTACACCATGACCCGCACCATAATGCGTTTGCTCAGGTACTTCAGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003700 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0007623 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008214 GO:0008276 GO:0008757 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010452 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016278 GO:0016279 GO:0016491 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032451 GO:0032452 GO:0034968 GO:0036211 GO:0042054 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0046975 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:0140110 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_8

Protein Analysis

322

Amino Acids

35.51

Weight (kDa)

6.3

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_KDM8_N PF24472 13 - 134 5.7e-63 KDM8-like, N-terminal ARM repeats
Cupin_8 PF13621 181 - 319 6.3e-21 Cupin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 141
AccB1I GGYRCC 1 cut(s) 664
AccBSI CCGCTC 1 cut(s) 158
AccII CGCG 5 cut(s) 123, 144, 162, 222, 750
AccIII TCCGGA 1 cut(s) 697
AclWI GGATC 1 cut(s) 574
AcoI YGGCCR 4 cut(s) 3, 114, 387, 602
AcuI CTGAAG 1 cut(s) 944
AcyI GRCGYC 3 cut(s) 138, 225, 288
AfaI GTAC 1 cut(s) 957
AfiI CCNNNNNNNGG 8 cut(s) 148, 195, 307, 319, 396, 424, 436, 657
AgsI TTSAA 1 cut(s) 337
AhdI GACNNNNNGTC 1 cut(s) 55
AjiI CACGTC 1 cut(s) 250
AjnI CCWGG 4 cut(s) 170, 194, 254, 380
AluBI AGCT 4 cut(s) 181, 715, 820, 871
AluI AGCT 4 cut(s) 181, 715, 820, 871
Alw21I GWGCWC 1 cut(s) 90
Alw26I GTCTC 2 cut(s) 373, 882
AlwI GGATC 1 cut(s) 574
Aor13HI TCCGGA 1 cut(s) 697
ApaI GGGCCC 1 cut(s) 301
ApeKI GCWGC 3 cut(s) 146, 178, 820
AspLEI GCGC 4 cut(s) 125, 146, 222, 775
AsuC2I CCSGG 1 cut(s) 564
AsuHPI GGTGA 2 cut(s) 274, 665
AvaII GGWCC 4 cut(s) 343, 427, 439, 896
BaeGI GKGCMC 1 cut(s) 301
BalI TGGCCA 2 cut(s) 5, 116
BanI GGYRCC 1 cut(s) 664
BanII GRGCYC 1 cut(s) 301
BarI GAAGNNNNNNTAC 2 cut(s) 745, 777
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 3 cut(s) 158, 190, 807
BccI CCATC 1 cut(s) 160
BceAI ACGGC 2 cut(s) 106, 430
BciT130I CCWGG 4 cut(s) 172, 196, 256, 382
BciVI GTATCC 1 cut(s) 705
BclI TGATCA 1 cut(s) 805
BcnI CCSGG 1 cut(s) 564
BcoDI GTCTC 2 cut(s) 373, 882
BfaI CTAG 1 cut(s) 396
BfuI GTATCC 1 cut(s) 705
BglI GCCNNNNNGGC 1 cut(s) 296
BlpI GCTNAGC 1 cut(s) 789
Bme1390I CCNGG 5 cut(s) 172, 196, 256, 382, 564
Bme18I GGWCC 4 cut(s) 343, 427, 439, 896
BmeRI GACNNNNNGTC 1 cut(s) 55
BmgBI CACGTC 1 cut(s) 250
BmiI GGNNCC 5 cut(s) 193, 260, 299, 418, 666
BmrFI CCNGG 5 cut(s) 172, 196, 256, 382, 564
BmsI GCATC 1 cut(s) 456
BoxI GACNNNNGTC 1 cut(s) 365
Bpu10I CCTNAGC 2 cut(s) 872, 951
Bpu1102I GCTNAGC 1 cut(s) 789
BpuEI CTTGAG 1 cut(s) 758
BpuMI CCSGG 1 cut(s) 564
BsaHI GRCGYC 3 cut(s) 138, 225, 288
BsaI GGTCTC 1 cut(s) 882
BsaJI CCNNGG 2 cut(s) 171, 194
BsaWI WCCGGW 2 cut(s) 657, 697
BsaXI ACNNNNNCTCC 6 cut(s) 65, 95, 335, 365, 860, 890
Bsc4I CCNNNNNNNGG 8 cut(s) 148, 195, 307, 319, 396, 424, 436, 657
Bse118I RCCGGY 6 cut(s) 131, 385, 571, 604, 650, 667
Bse3DI GCAATG 1 cut(s) 240
BseAI TCCGGA 1 cut(s) 697
BseBI CCWGG 4 cut(s) 172, 196, 256, 382
BseDI CCNNGG 2 cut(s) 171, 194
BseLI CCNNNNNNNGG 8 cut(s) 148, 195, 307, 319, 396, 424, 436, 657
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 3 cut(s) 267, 803, 965
BseRI GAGGAG 3 cut(s) 20, 59, 305
BseSI GKGCMC 1 cut(s) 301
BseX3I CGGCCG 1 cut(s) 387
BseXI GCAGC 3 cut(s) 158, 190, 807
BseYI CCCAGC 1 cut(s) 902
Bsh1236I CGCG 5 cut(s) 123, 144, 162, 222, 750
Bsh1285I CGRYCG 1 cut(s) 390
BshNI GGYRCC 1 cut(s) 664
BsiEI CGRYCG 1 cut(s) 390
BsiHKAI GWGCWC 1 cut(s) 90
BslFI GGGAC 1 cut(s) 919
BslI CCNNNNNNNGG 8 cut(s) 148, 195, 307, 319, 396, 424, 436, 657
BsmAI GTCTC 2 cut(s) 373, 882
BsmFI GGGAC 1 cut(s) 919
Bso31I GGTCTC 1 cut(s) 882
Bsp120I GGGCCC 1 cut(s) 297
Bsp1286I GDGCHC 2 cut(s) 90, 301
Bsp13I TCCGGA 1 cut(s) 697
Bsp143I GATC 2 cut(s) 566, 805
Bsp1720I GCTNAGC 1 cut(s) 789
Bsp68I TCGCGA 1 cut(s) 162
BspCNI CTCAG 3 cut(s) 268, 802, 964
BspEI TCCGGA 1 cut(s) 697
BspFNI CGCG 5 cut(s) 123, 144, 162, 222, 750
BspLI GGNNCC 5 cut(s) 193, 260, 299, 418, 666
BspPI GGATC 1 cut(s) 574
BspT107I GGYRCC 1 cut(s) 664
BspTNI GGTCTC 1 cut(s) 882
BsrBI CCGCTC 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 240
BsrFI RCCGGY 6 cut(s) 131, 385, 571, 604, 650, 667
BssAI RCCGGY 6 cut(s) 131, 385, 571, 604, 650, 667
BssECI CCNNGG 2 cut(s) 171, 194
BssMI GATC 2 cut(s) 566, 805
BssNI GRCGYC 3 cut(s) 138, 225, 288
Bst2UI CCWGG 4 cut(s) 172, 196, 256, 382
Bst4CI ACNGT 3 cut(s) 508, 664, 910
Bst6I CTCTTC 1 cut(s) 766
BstACI GRCGYC 3 cut(s) 138, 225, 288
BstC8I GCNNGC 6 cut(s) 133, 160, 241, 329, 387, 606
BstDEI CTNAG 4 cut(s) 276, 789, 872, 951
BstEII GGTNACC 1 cut(s) 653
BstFNI CGCG 5 cut(s) 123, 144, 162, 222, 750
BstHHI GCGC 4 cut(s) 125, 146, 222, 775
BstKTI GATC 2 cut(s) 569, 808
BstMAI GTCTC 2 cut(s) 373, 882
BstMBI GATC 2 cut(s) 566, 805
BstMCI CGRYCG 1 cut(s) 390
BstMWI GCNNNNNNNGC 5 cut(s) 122, 141, 152, 155, 296
BstNI CCWGG 4 cut(s) 172, 196, 256, 382
BstPAI GACNNNNGTC 1 cut(s) 365
BstPI GGTNACC 1 cut(s) 653
BstSCI CCNGG 5 cut(s) 170, 194, 254, 380, 562
BstSLI GKGCMC 1 cut(s) 301
BstUI CGCG 5 cut(s) 123, 144, 162, 222, 750
BstV1I GCAGC 3 cut(s) 158, 190, 807
BstZI CGGCCG 1 cut(s) 387
BsuI GTATCC 1 cut(s) 705
BtrI CACGTC 1 cut(s) 250
BtuMI TCGCGA 1 cut(s) 162
Cac8I GCNNGC 6 cut(s) 133, 160, 241, 329, 387, 606
CfoI GCGC 4 cut(s) 125, 146, 222, 775
Cfr10I RCCGGY 6 cut(s) 131, 385, 571, 604, 650, 667
CseI GACGC 2 cut(s) 233, 296
Csp6I GTAC 1 cut(s) 956
CviAII CATG 5 cut(s) 112, 307, 319, 628, 926
CviQI GTAC 1 cut(s) 956
DdeI CTNAG 4 cut(s) 276, 789, 872, 951
DpnI GATC 2 cut(s) 568, 807
DpnII GATC 2 cut(s) 566, 805
DriI GACNNNNNGTC 1 cut(s) 55
EaeI YGGCCR 4 cut(s) 3, 114, 387, 602
EagI CGGCCG 1 cut(s) 387
Eam1104I CTCTTC 1 cut(s) 766
Eam1105I GACNNNNNGTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 766
EclXI CGGCCG 1 cut(s) 387
Eco24I GRGCYC 1 cut(s) 301
Eco31I GGTCTC 1 cut(s) 882
Eco47I GGWCC 4 cut(s) 343, 427, 439, 896
Eco52I CGGCCG 1 cut(s) 387
Eco57I CTGAAG 1 cut(s) 944
Eco91I GGTNACC 1 cut(s) 653
EcoO109I RGGNCCY 1 cut(s) 298
EcoO65I GGTNACC 1 cut(s) 653
EcoRII CCWGG 4 cut(s) 170, 194, 254, 380
EcoT38I GRGCYC 1 cut(s) 301
FaeI CATG 5 cut(s) 115, 310, 322, 631, 929
FaiI YATR 9 cut(s) 113, 308, 320, 593, 629, 833, 835, 927, 939
FaqI GGGAC 1 cut(s) 919
FatI CATG 5 cut(s) 111, 306, 318, 627, 925
FauI CCCGC 2 cut(s) 336, 939
FauNDI CATATG 1 cut(s) 833
FbaI TGATCA 1 cut(s) 805
FriOI GRGCYC 1 cut(s) 301
FseI GGCCGGCC 1 cut(s) 389
FspBI CTAG 1 cut(s) 396
GlaI GCGC 4 cut(s) 124, 145, 221, 774
GsaI CCCAGC 1 cut(s) 906
HgaI GACGC 2 cut(s) 233, 296
HhaI GCGC 4 cut(s) 125, 146, 222, 775
Hin1I GRCGYC 3 cut(s) 138, 225, 288
Hin1II CATG 5 cut(s) 115, 310, 322, 631, 929
Hin6I GCGC 4 cut(s) 123, 144, 220, 773
HinP1I GCGC 4 cut(s) 123, 144, 220, 773
HinfI GANTC 4 cut(s) 50, 56, 745, 758
HphI GGTGA 2 cut(s) 274, 665
Hpy166II GTNNAC 1 cut(s) 282
Hpy188I TCNGA 7 cut(s) 13, 55, 85, 343, 406, 810, 963
Hpy188III TCNNGA 4 cut(s) 161, 698, 737, 842
Hpy8I GTNNAC 1 cut(s) 282
Hpy99I CGWCG 5 cut(s) 140, 227, 254, 290, 781
HpyAV CCTTC 1 cut(s) 530
HpyCH4III ACNGT 3 cut(s) 508, 664, 910
HpyCH4IV ACGT 4 cut(s) 105, 138, 249, 779
HpyF10VI GCNNNNNNNGC 5 cut(s) 122, 141, 152, 155, 296
HpyF3I CTNAG 4 cut(s) 276, 789, 872, 951
HpySE526I ACGT 4 cut(s) 105, 138, 249, 779
Hsp92I GRCGYC 3 cut(s) 138, 225, 288
Hsp92II CATG 5 cut(s) 115, 310, 322, 631, 929
HspAI GCGC 4 cut(s) 123, 144, 220, 773
Kpn2I TCCGGA 1 cut(s) 697
KroI GCCGGC 3 cut(s) 131, 385, 604
KroNI GCCGGC 3 cut(s) 133, 387, 606
Ksp22I TGATCA 1 cut(s) 805
Kzo9I GATC 2 cut(s) 566, 805
LmnI GCTCC 6 cut(s) 72, 175, 186, 264, 712, 868
Lsp1109I GCAGC 3 cut(s) 158, 190, 807
LweI GCATC 1 cut(s) 456
MaeI CTAG 1 cut(s) 396
MaeII ACGT 4 cut(s) 105, 138, 249, 779
MaeIII GTNAC 4 cut(s) 358, 443, 653, 910
MalI GATC 2 cut(s) 568, 807
MbiI CCGCTC 1 cut(s) 158
MboI GATC 2 cut(s) 566, 805
MboII GAAGA 2 cut(s) 526, 753
MhlI GDGCHC 2 cut(s) 90, 301
MlsI TGGCCA 2 cut(s) 5, 116
MluCI AATT 2 cut(s) 421, 685
MluNI TGGCCA 2 cut(s) 5, 116
MlyI GAGTC 3 cut(s) 44, 65, 752
MmeI TCCRAC 1 cut(s) 36
Mox20I TGGCCA 2 cut(s) 5, 116
MreI CGCCGGCG 1 cut(s) 131
MroI TCCGGA 1 cut(s) 697
MroNI GCCGGC 3 cut(s) 131, 385, 604
MscI TGGCCA 2 cut(s) 5, 116
MseI TTAA 1 cut(s) 545
MslI CAYNNNNRTG 1 cut(s) 939
Msp20I TGGCCA 2 cut(s) 5, 116
MspA1I CMGCKG 3 cut(s) 149, 275, 356
MspR9I CCNGG 5 cut(s) 172, 196, 256, 382, 564
MvaI CCWGG 4 cut(s) 172, 196, 256, 382
MvnI CGCG 5 cut(s) 123, 144, 162, 222, 750
MwoI GCNNNNNNNGC 5 cut(s) 122, 141, 152, 155, 296
NaeI GCCGGC 3 cut(s) 133, 387, 606
NciI CCSGG 1 cut(s) 564
NdeI CATATG 1 cut(s) 833
NdeII GATC 2 cut(s) 566, 805
NgoMIV GCCGGC 3 cut(s) 131, 385, 604
NlaIII CATG 5 cut(s) 115, 310, 322, 631, 929
NlaIV GGNNCC 5 cut(s) 193, 260, 299, 418, 666
NmuCI GTSAC 3 cut(s) 358, 443, 653
NruI TCGCGA 1 cut(s) 162
PdiI GCCGGC 3 cut(s) 133, 387, 606
PfeI GAWTC 1 cut(s) 745
PleI GAGTC 3 cut(s) 44, 64, 752
PpsI GAGTC 3 cut(s) 44, 64, 752
PshAI GACNNNNGTC 1 cut(s) 365
Psp6I CCWGG 4 cut(s) 170, 194, 254, 380
PspEI GGTNACC 1 cut(s) 653
PspFI CCCAGC 1 cut(s) 902
PspGI CCWGG 4 cut(s) 170, 194, 254, 380
PspN4I GGNNCC 5 cut(s) 193, 260, 299, 418, 666
PspOMI GGGCCC 1 cut(s) 297
PsrI GAACNNNNNNTAC 2 cut(s) 543, 575
RigI GGCCGGCC 1 cut(s) 389
RruI TCGCGA 1 cut(s) 162
RsaI GTAC 1 cut(s) 957
RsaNI GTAC 1 cut(s) 956
RseI CAYNNNNRTG 1 cut(s) 939
SaqAI TTAA 1 cut(s) 545
Sau3AI GATC 2 cut(s) 566, 805
SchI GAGTC 3 cut(s) 44, 65, 752
ScrFI CCNGG 5 cut(s) 172, 196, 256, 382, 564
SduI GDGCHC 2 cut(s) 90, 301
SfaNI GCATC 1 cut(s) 456
SgrAI CRCCGGYG 1 cut(s) 131
SinI GGWCC 4 cut(s) 343, 427, 439, 896
SmiMI CAYNNNNRTG 1 cut(s) 939
SmlI CTYRAG 1 cut(s) 737
SmoI CTYRAG 1 cut(s) 737
Sse9I AATT 2 cut(s) 421, 685
SspMI CTAG 1 cut(s) 396
StyD4I CCNGG 5 cut(s) 170, 194, 254, 380, 562
TaaI ACNGT 3 cut(s) 508, 664, 910
TaiI ACGT 4 cut(s) 108, 141, 252, 782
TaqI TCGA 2 cut(s) 48, 303
TasI AATT 2 cut(s) 421, 685
TauI GCSGC 9 cut(s) 96, 128, 131, 158, 272, 275, 327, 392, 395
TfiI GAWTC 1 cut(s) 745
Tru1I TTAA 1 cut(s) 545
Tru9I TTAA 1 cut(s) 545
TseFI GTSAC 3 cut(s) 358, 443, 653
TseI GCWGC 3 cut(s) 146, 178, 820
Tsp45I GTSAC 3 cut(s) 358, 443, 653
TspGWI ACGGA 3 cut(s) 193, 431, 476
VpaK11BI GGWCC 4 cut(s) 343, 427, 439, 896
XspI CTAG 1 cut(s) 396
ZraI GACGTC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.