Rh6BG257500

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0005300
Physical Location & Seq
Reverse (-)
47074572 .. 47085135
10564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG257500.1

Sequence Viewer

Length: 321 bp
ATGATTTTGGACTTCAACCCATCATCACTCCACTCCGGCTTGGGAGCAGCTTCACTCCGGCCCCTAGCACTTCATCCTCCCCGTCTGGTGCGACGTCTACGCAATGGCCTGACTCCACGTCACCAAGCTCCACTCGCCGCCGGCATGGGCCTTGACATGGGCCTCCTTATAGGCGGCTCGCTCTTCAAATCAGACCTCCACTTCGCCGTGACTAAAGACTTCGCTAAATCCAGAGCCGCCGCTAGGGTTTTCGAACAAAACGGCCCCAATTTAAACCACCGATTTGTCCGTGACGACCTTAAAGCAACGGGGGTCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003700 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0007623 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008214 GO:0008276 GO:0008757 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010452 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016278 GO:0016279 GO:0016491 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032451 GO:0032452 GO:0034968 GO:0036211 GO:0042054 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0046975 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:0140110 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_8

Protein Analysis

106

Amino Acids

11.42

Weight (kDa)

11.44

Isoelectric Point (pI)

25.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 97
AccI GTMKAC 1 cut(s) 97
AciI CCGC 4 cut(s) 138, 174, 237, 240
AcyI GRCGYC 1 cut(s) 94
AfiI CCNNNNNNNGG 2 cut(s) 157, 243
AgsI TTSAA 2 cut(s) 16, 187
AhdI GACNNNNNGTC 1 cut(s) 117
AjiI CACGTC 1 cut(s) 119
AluBI AGCT 2 cut(s) 50, 128
AluI AGCT 2 cut(s) 50, 128
AoxI GGCC 5 cut(s) 59, 106, 148, 160, 262
ApeKI GCWGC 1 cut(s) 47
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
AspS9I GGNCC 4 cut(s) 60, 148, 160, 263
AsuHPI GGTGA 1 cut(s) 113
AsuII TTCGAA 1 cut(s) 252
BbvI GCAGC 1 cut(s) 59
BccI CCATC 1 cut(s) 28
BceAI ACGGC 2 cut(s) 191, 277
BfaI CTAG 2 cut(s) 65, 243
BisI GCNGC 5 cut(s) 48, 138, 175, 237, 240
BlsI GCNGC 5 cut(s) 49, 139, 176, 238, 241
BmeRI GACNNNNNGTC 1 cut(s) 117
BmgBI CACGTC 1 cut(s) 119
BmgT120I GGNCC 4 cut(s) 60, 148, 160, 263
BmiI GGNNCC 2 cut(s) 62, 265
Bpu14I TTCGAA 1 cut(s) 252
BsaHI GRCGYC 1 cut(s) 94
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 243
Bse118I RCCGGY 1 cut(s) 140
Bse3DI GCAATG 1 cut(s) 109
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 2 cut(s) 157, 243
BseMI GCAATG 1 cut(s) 109
BseXI GCAGC 1 cut(s) 59
BshFI GGCC 5 cut(s) 61, 108, 150, 162, 264
BsiSI CCGG 3 cut(s) 36, 58, 141
BslI CCNNNNNNNGG 2 cut(s) 157, 243
BsnI GGCC 5 cut(s) 61, 108, 150, 162, 264
Bsp119I TTCGAA 1 cut(s) 252
BspACI CCGC 4 cut(s) 138, 174, 237, 240
BspANI GGCC 5 cut(s) 61, 108, 150, 162, 264
BspLI GGNNCC 2 cut(s) 62, 265
BspQI GCTCTTC 1 cut(s) 188
BspT104I TTCGAA 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 109
BsrFI RCCGGY 1 cut(s) 140
BssAI RCCGGY 1 cut(s) 140
BssNI GRCGYC 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 188
BstACI GRCGYC 1 cut(s) 94
BstBI TTCGAA 1 cut(s) 252
BstC8I GCNNGC 2 cut(s) 142, 179
BstF5I GGATG 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 59
BsuRI GGCC 5 cut(s) 61, 108, 150, 162, 264
BtrI CACGTC 1 cut(s) 119
BtsCI GGATG 1 cut(s) 73
Cac8I GCNNGC 2 cut(s) 142, 179
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 4 cut(s) 60, 148, 160, 263
CviAII CATG 2 cut(s) 145, 157
DraI TTTAAA 1 cut(s) 273
DriI GACNNNNNGTC 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 188
Eam1105I GACNNNNNGTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 188
FaeI CATG 2 cut(s) 148, 160
FaiI YATR 3 cut(s) 146, 158, 170
FatI CATG 2 cut(s) 144, 156
FblI GTMKAC 1 cut(s) 97
Fnu4HI GCNGC 5 cut(s) 48, 138, 175, 237, 240
FokI GGATG 1 cut(s) 60
Fsp4HI GCNGC 5 cut(s) 48, 138, 175, 237, 240
FspBI CTAG 2 cut(s) 65, 243
GluI GCNGC 5 cut(s) 48, 138, 175, 237, 240
HaeIII GGCC 5 cut(s) 61, 108, 150, 162, 264
HapII CCGG 3 cut(s) 36, 58, 141
Hin1I GRCGYC 1 cut(s) 94
Hin1II CATG 2 cut(s) 148, 160
HinfI GANTC 1 cut(s) 112
HpaII CCGG 3 cut(s) 36, 58, 141
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 98
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 1 cut(s) 231
Hpy8I GTNNAC 1 cut(s) 98
Hpy99I CGWCG 1 cut(s) 96
HpyCH4IV ACGT 2 cut(s) 94, 118
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpySE526I ACGT 2 cut(s) 94, 118
Hsp92I GRCGYC 1 cut(s) 94
Hsp92II CATG 2 cut(s) 148, 160
KroI GCCGGC 1 cut(s) 140
KroNI GCCGGC 1 cut(s) 142
LguI GCTCTTC 1 cut(s) 188
LmnI GCTCC 2 cut(s) 44, 133
LpnPI CCDG 6 cut(s) 49, 71, 71, 122, 154, 244
Lsp1109I GCAGC 1 cut(s) 59
MaeI CTAG 2 cut(s) 65, 243
MaeII ACGT 2 cut(s) 94, 118
MaeIII GTNAC 3 cut(s) 119, 208, 290
MboII GAAGA 1 cut(s) 175
MluCI AATT 1 cut(s) 268
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 3 cut(s) 87, 173, 206
MroNI GCCGGC 1 cut(s) 140
MseI TTAA 2 cut(s) 272, 300
MspI CCGG 3 cut(s) 36, 58, 141
MwoI GCNNNNNNNGC 1 cut(s) 134
NaeI GCCGGC 1 cut(s) 142
NgoMIV GCCGGC 1 cut(s) 140
NlaIII CATG 2 cut(s) 148, 160
NlaIV GGNNCC 2 cut(s) 62, 265
NmuCI GTSAC 3 cut(s) 119, 208, 290
NspV TTCGAA 1 cut(s) 252
PciSI GCTCTTC 1 cut(s) 188
PdiI GCCGGC 1 cut(s) 142
PkrI GCNGC 5 cut(s) 49, 139, 176, 238, 241
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 62, 265
PspPI GGNCC 4 cut(s) 60, 148, 160, 263
SapI GCTCTTC 1 cut(s) 188
SaqAI TTAA 2 cut(s) 272, 300
SatI GCNGC 5 cut(s) 48, 138, 175, 237, 240
Sau96I GGNCC 4 cut(s) 60, 148, 160, 263
SchI GAGTC 1 cut(s) 106
SetI ASST 6 cut(s) 52, 97, 121, 130, 198, 300
SfuI TTCGAA 1 cut(s) 252
Sse9I AATT 1 cut(s) 268
SsiI CCGC 4 cut(s) 138, 174, 237, 240
SspMI CTAG 2 cut(s) 65, 243
TaiI ACGT 2 cut(s) 97, 121
TaqI TCGA 1 cut(s) 252
TasI AATT 1 cut(s) 268
TauI GCSGC 4 cut(s) 140, 177, 239, 242
Tru1I TTAA 2 cut(s) 272, 300
Tru9I TTAA 2 cut(s) 272, 300
TseFI GTSAC 3 cut(s) 119, 208, 290
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 3 cut(s) 119, 208, 290
TspDTI ATGAA 1 cut(s) 62
TspGWI ACGGA 1 cut(s) 278
XmiI GTMKAC 1 cut(s) 97
XspI CTAG 2 cut(s) 65, 243
ZraI GACGTC 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.