RchiOBHm_Chr5g0078191

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0005300
Physical Location & Seq
Forward (+)
84113831 .. 84115393
1563 bp
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UTR
Exon/CDS
Intron
PRQ35273

Sequence Viewer

Length: 186 bp
ATGCCGTCTCAGATTAATGAGCTGCGTGAGGACATATGTATTTCTGACTATTATTGGGCTGGTGGCGGAGAACTAAGGTCTCTAAATGCTTGGTTCGGTCCAGCTGGGACTGTAACCTCATTACACCATGATCCGCACCATAATGTGTTTGCCCAGACTGCAATTTGTAGCGCCCATGAGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003700 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0007623 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008214 GO:0008276 GO:0008757 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010452 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016278 GO:0016279 GO:0016491 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032451 GO:0032452 GO:0034968 GO:0036211 GO:0042054 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0046975 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:0140110 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_8

Protein Analysis

61

Amino Acids

6.75

Weight (kDa)

5.23

Isoelectric Point (pI)

43.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_8 PF13621 3 - 52 3.6e-06 Cupin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 66, 134
AclWI GGATC 1 cut(s) 125
AluBI AGCT 2 cut(s) 22, 104
AluI AGCT 2 cut(s) 22, 104
Alw26I GTCTC 3 cut(s) 12, 84, 173
AlwI GGATC 1 cut(s) 125
ApeKI GCWGC 1 cut(s) 22
AseI ATTAAT 1 cut(s) 15
AspLEI GCGC 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 98
AvaII GGWCC 1 cut(s) 98
BbvI GCAGC 1 cut(s) 9
BcoDI GTCTC 3 cut(s) 12, 84, 173
BfoI RGCGCY 1 cut(s) 174
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BsaI GGTCTC 1 cut(s) 84
BseMII CTCAG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 9
BseYI CCCAGC 1 cut(s) 104
BslFI GGGAC 1 cut(s) 121
BsmAI GTCTC 3 cut(s) 12, 84, 173
BsmBI CGTCTC 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 121
Bso31I GGTCTC 1 cut(s) 84
Bsp143I GATC 1 cut(s) 130
BspACI CCGC 2 cut(s) 66, 134
BspCNI CTCAG 1 cut(s) 22
BspPI GGATC 1 cut(s) 125
BspTNI GGTCTC 1 cut(s) 84
BssMI GATC 1 cut(s) 130
Bst4CI ACNGT 1 cut(s) 112
BstDEI CTNAG 2 cut(s) 9, 74
BstH2I RGCGCY 1 cut(s) 174
BstHHI GCGC 1 cut(s) 173
BstKTI GATC 1 cut(s) 133
BstMAI GTCTC 3 cut(s) 12, 84, 173
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstV1I GCAGC 1 cut(s) 9
CfoI GCGC 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 98
CviAII CATG 3 cut(s) 128, 176, 183
CviJI RGCY 3 cut(s) 22, 59, 104
CviKI_1 RGCY 3 cut(s) 22, 59, 104
DdeI CTNAG 2 cut(s) 9, 74
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
EciI GGCGGA 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 98
Esp3I CGTCTC 1 cut(s) 12
FaeI CATG 3 cut(s) 131, 179, 186
FaiI YATR 6 cut(s) 35, 37, 129, 141, 177, 184
FaqI GGGAC 1 cut(s) 121
FatI CATG 3 cut(s) 127, 175, 182
FauNDI CATATG 1 cut(s) 35
Fnu4HI GCNGC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 23
GlaI GCGC 1 cut(s) 172
GluI GCNGC 1 cut(s) 23
GsaI CCCAGC 1 cut(s) 108
HaeII RGCGCY 1 cut(s) 174
HhaI GCGC 1 cut(s) 173
Hin1II CATG 3 cut(s) 131, 179, 186
Hin6I GCGC 1 cut(s) 171
HinP1I GCGC 1 cut(s) 171
Hpy188I TCNGA 2 cut(s) 12, 46
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 2 cut(s) 9, 74
Hsp92II CATG 3 cut(s) 131, 179, 186
HspAI GCGC 1 cut(s) 171
Kzo9I GATC 1 cut(s) 130
LpnPI CCDG 4 cut(s) 45, 90, 114, 167
Lsp1109I GCAGC 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 112
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MluCI AATT 1 cut(s) 162
MnlI CCTC 2 cut(s) 22, 127
MseI TTAA 1 cut(s) 15
MslI CAYNNNNRTG 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeI CATATG 1 cut(s) 35
NdeII GATC 1 cut(s) 130
NlaIII CATG 3 cut(s) 131, 179, 186
PkrI GCNGC 1 cut(s) 24
PshBI ATTAAT 1 cut(s) 15
PspFI CCCAGC 1 cut(s) 104
PspPI GGNCC 1 cut(s) 98
PvuII CAGCTG 1 cut(s) 104
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 1 cut(s) 23
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 1 cut(s) 98
SetI ASST 4 cut(s) 24, 80, 106, 119
SgeI CNNG 7 cut(s) 38, 72, 102, 113, 117, 140, 166
SinI GGWCC 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 141
Sse9I AATT 1 cut(s) 162
SsiI CCGC 2 cut(s) 66, 134
TaaI ACNGT 1 cut(s) 112
TaqII GACCGA 1 cut(s) 86
TasI AATT 1 cut(s) 162
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TseI GCWGC 1 cut(s) 22
VpaK11BI GGWCC 1 cut(s) 98
VspI ATTAAT 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.