Rh5CG560200

lysine-specific demethylase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
78411432 .. 78414308
2877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG560200.1

Sequence Viewer

Length: 1245 bp
ATGGCCAACTCCGACCACCACCACCACCACCACCTCCACCTCCCCACACCGACCCTCGACTCCGAGTCCTCCACGCTCCTCCACACCCTCTCCGAGCACGGCGGCTACGCCTACGTCAGCATGGCCACACGCGCCGCCGCCGGCGACGTCCGGGCCGCGGAGGCCGCTCGCGAGATGGCCTGGGAGCAGCTCCACTCCGGCCCCTGGCACTCCGTCCTCCCAGTCTGGCGCGACGCCTACGCAATGGCCTGCCTCCACGTCGCCAAGCTCCACTTCGCCGCCGCTGAGTTCACCGACGCCCTCCGCGCCCTCGACATGGGCCTCCTCATGGGCGGCCCGCTCTTCAAATCGGACCTCCACTCTGCCGTGACTAAAGTCTCCGCTAAATCCAGAGCCGCCGCCGCTAGGGTTTCCGAACAAAACGGCCCCAATTTGGACCGCCGTCTGGTCCGTGACGACCTCAAAGCAACGGAGATGCTTGGGGTTTTGCCTCCAAAATCACTATCTTGTAAAACGGTTGTGAAGAAGTCTGGTTTGTCTTTGGAAGGGTTTTTAAGAGAGCATTTCTTACCGGGATTGCCGGTTATTTTGACCGATTGTATGGCACATTGGCCGGCGAGGACAAAGTGGAATGACATGGATTACCTGATAAGAGTAGCAGGTGACCGGACGGTGCCGGTTGAGGTTGGGAAAAATTACTTGTATCCGGAGTGGAAGCAGGAGCTTATTACGTTTTCGCAGTTTCTTGAGAGGATTCGGGGTAATGACTCTTCCTCTGGTGCCCCGACGTATCTTGCTCAACACTCATTGTTTGATCAGATAAACGAGCTGCGTGAGGACATATGTATTCCCGACTATTGTTGTGCTGGTGGTGGGGAACTAAGGGCTCTAAATGCTTGGTTTGGTCCGGCTGGGACTGTAACCCCATTACACCATGATCCGCACCATAATGTGTTTGCGCAGGTAGTTGGAAAAAAGTATATAAGGCTCTATCGTGCTTCATTGTCAGAAGAACTCTATCCACATACTGAAACCATGCTTTGCAACTCAAGTCAGGTTGATCTTGACAATGTAGATGAGAAAGAATTCCCGGAGGTGCAGGACTTAGAATTTCTTGACTGCATATTAGAGGAAGGTGACATGCTTTATATCCCACCAAAGTGGTGGCACTATGTACGGTCTCTTACAACAAGTATGTCAGTTAGCTTTTGGTGGAGTGATTATGACAGTTCCGCGACCTCTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

414

Amino Acids

46.47

Weight (kDa)

5.76

Isoelectric Point (pI)

40.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_KDM8_N PF24472 16 - 138 5.1e-63 KDM8-like, N-terminal ARM repeats
Cupin_8 PF13621 184 - 407 2.1e-48 Cupin-like domain
JmjC_2 PF08007 298 - 403 9e-12 JmjC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 650
AatII GACGTC 1 cut(s) 150
Acc16I TGCGCA 1 cut(s) 960
Acc36I ACCTGC 2 cut(s) 650, 952
AccB1I GGYRCC 2 cut(s) 673, 779
AccBSI CCGCTC 2 cut(s) 167, 340
AccII CGCG 6 cut(s) 132, 158, 171, 231, 306, 1235
AccIII TCCGGA 1 cut(s) 706
AclWI GGATC 1 cut(s) 932
AcoI YGGCCR 3 cut(s) 3, 123, 611
AcsI RAATTY 2 cut(s) 1085, 1109
AcyI GRCGYC 3 cut(s) 147, 234, 297
AfaI GTAC 1 cut(s) 1176
AfiI CCNNNNNNNGG 7 cut(s) 157, 204, 316, 328, 405, 433, 445
AgsI TTSAA 1 cut(s) 346
AhdI GACNNNNNGTC 1 cut(s) 64
AjiI CACGTC 1 cut(s) 259
AjnI CCWGG 2 cut(s) 179, 203
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AleI CACNNNNGTG 1 cut(s) 1159
AluBI AGCT 5 cut(s) 190, 268, 724, 829, 1206
AluI AGCT 5 cut(s) 190, 268, 724, 829, 1206
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 2 cut(s) 382, 1185
AlwI GGATC 1 cut(s) 932
Aor13HI TCCGGA 1 cut(s) 706
ApeKI GCWGC 2 cut(s) 187, 829
ApoI RAATTY 2 cut(s) 1085, 1109
Asp700I GAANNNNTTC 1 cut(s) 1085
AspLEI GCGC 4 cut(s) 134, 231, 308, 961
AspS9I GGNCC 9 cut(s) 153, 200, 319, 335, 352, 425, 436, 448, 905
AsuC2I CCSGG 3 cut(s) 152, 573, 1091
AsuHPI GGTGA 3 cut(s) 283, 674, 1148
AvaII GGWCC 4 cut(s) 352, 436, 448, 905
BaeGI GKGCMC 1 cut(s) 784
BalI TGGCCA 2 cut(s) 5, 125
BanI GGYRCC 2 cut(s) 673, 779
BanII GRGCYC 1 cut(s) 889
BarI GAAGNNNNNNTAC 2 cut(s) 754, 786
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 2 cut(s) 199, 816
BccI CCATC 1 cut(s) 169
BceAI ACGGC 4 cut(s) 115, 350, 426, 439
BciT130I CCWGG 2 cut(s) 181, 205
BciVI GTATCC 1 cut(s) 714
BclI TGATCA 1 cut(s) 814
BcnI CCSGG 3 cut(s) 152, 573, 1091
BcoDI GTCTC 2 cut(s) 382, 1185
BfaI CTAG 1 cut(s) 405
BfuAI ACCTGC 2 cut(s) 650, 952
BfuI GTATCC 1 cut(s) 714
BglI GCCNNNNNGGC 1 cut(s) 161
Bme1390I CCNGG 5 cut(s) 152, 181, 205, 573, 1091
Bme18I GGWCC 4 cut(s) 352, 436, 448, 905
BmeRI GACNNNNNGTC 1 cut(s) 64
BmgBI CACGTC 1 cut(s) 259
BmgT120I GGNCC 9 cut(s) 153, 200, 319, 335, 352, 425, 436, 448, 905
BmiI GGNNCC 4 cut(s) 202, 427, 675, 781
BmrFI CCNGG 5 cut(s) 152, 181, 205, 573, 1091
BmrI ACTGGG 1 cut(s) 215
BmsI GCATC 1 cut(s) 465
BmuI ACTGGG 1 cut(s) 215
BoxI GACNNNNGTC 2 cut(s) 374, 441
BpuEI CTTGAG 2 cut(s) 767, 1033
BpuMI CCSGG 3 cut(s) 152, 573, 1091
BsaHI GRCGYC 3 cut(s) 147, 234, 297
BsaI GGTCTC 1 cut(s) 1185
BsaJI CCNNGG 3 cut(s) 156, 180, 203
BsaWI WCCGGW 2 cut(s) 666, 706
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 7 cut(s) 157, 204, 316, 328, 405, 433, 445
Bse118I RCCGGY 4 cut(s) 140, 580, 613, 676
Bse1I ACTGG 1 cut(s) 221
Bse3DI GCAATG 1 cut(s) 249
BseAI TCCGGA 1 cut(s) 706
BseBI CCWGG 2 cut(s) 181, 205
BseDI CCNNGG 3 cut(s) 156, 180, 203
BseLI CCNNNNNNNGG 7 cut(s) 157, 204, 316, 328, 405, 433, 445
BseMI GCAATG 1 cut(s) 249
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 1 cut(s) 221
BseRI GAGGAG 2 cut(s) 68, 314
BseSI GKGCMC 1 cut(s) 784
BseXI GCAGC 2 cut(s) 199, 816
BseYI CCCAGC 1 cut(s) 911
BsgI GTGCAG 1 cut(s) 1118
Bsh1236I CGCG 6 cut(s) 132, 158, 171, 231, 306, 1235
BshNI GGYRCC 2 cut(s) 673, 779
BsiHKAI GWGCWC 1 cut(s) 99
BslFI GGGAC 1 cut(s) 928
BslI CCNNNNNNNGG 7 cut(s) 157, 204, 316, 328, 405, 433, 445
BsmAI GTCTC 2 cut(s) 382, 1185
BsmFI GGGAC 1 cut(s) 928
Bso31I GGTCTC 1 cut(s) 1185
Bsp1286I GDGCHC 3 cut(s) 99, 784, 889
Bsp13I TCCGGA 1 cut(s) 706
Bsp143I GATC 3 cut(s) 814, 937, 1060
Bsp68I TCGCGA 1 cut(s) 171
BspCNI CTCAG 1 cut(s) 277
BspEI TCCGGA 1 cut(s) 706
BspFNI CGCG 6 cut(s) 132, 158, 171, 231, 306, 1235
BspLI GGNNCC 4 cut(s) 202, 427, 675, 781
BspMI ACCTGC 2 cut(s) 650, 952
BspPI GGATC 1 cut(s) 932
BspQI GCTCTTC 1 cut(s) 347
BspT107I GGYRCC 2 cut(s) 673, 779
BspTNI GGTCTC 1 cut(s) 1185
BsrBI CCGCTC 2 cut(s) 167, 340
BsrDI GCAATG 1 cut(s) 249
BsrFI RCCGGY 4 cut(s) 140, 580, 613, 676
BsrI ACTGG 1 cut(s) 221
BssAI RCCGGY 4 cut(s) 140, 580, 613, 676
BssECI CCNNGG 3 cut(s) 156, 180, 203
BssMI GATC 3 cut(s) 814, 937, 1060
BssNI GRCGYC 3 cut(s) 147, 234, 297
Bst2UI CCWGG 2 cut(s) 181, 205
Bst4CI ACNGT 5 cut(s) 517, 673, 919, 1179, 1229
Bst6I CTCTTC 2 cut(s) 347, 775
BstACI GRCGYC 3 cut(s) 147, 234, 297
BstC8I GCNNGC 5 cut(s) 142, 169, 250, 338, 615
BstDEI CTNAG 3 cut(s) 285, 881, 1105
BstDSI CCRYGG 1 cut(s) 156
BstEII GGTNACC 1 cut(s) 662
BstFNI CGCG 6 cut(s) 132, 158, 171, 231, 306, 1235
BstHHI GCGC 4 cut(s) 134, 231, 308, 961
BstKTI GATC 3 cut(s) 817, 940, 1063
BstMAI GTCTC 2 cut(s) 382, 1185
BstMBI GATC 3 cut(s) 814, 937, 1060
BstMWI GCNNNNNNNGC 6 cut(s) 131, 161, 164, 305, 401, 893
BstNI CCWGG 2 cut(s) 181, 205
BstNSI RCATGY 1 cut(s) 1144
BstPAI GACNNNNGTC 2 cut(s) 374, 441
BstPI GGTNACC 1 cut(s) 662
BstSCI CCNGG 5 cut(s) 150, 179, 203, 571, 1089
BstSLI GKGCMC 1 cut(s) 784
BstUI CGCG 6 cut(s) 132, 158, 171, 231, 306, 1235
BstV1I GCAGC 2 cut(s) 199, 816
BstXI CCANNNNNNTGG 2 cut(s) 1161, 1164
BsuI GTATCC 1 cut(s) 714
BtgI CCRYGG 1 cut(s) 156
BtrI CACGTC 1 cut(s) 259
BtuMI TCGCGA 1 cut(s) 171
BveI ACCTGC 2 cut(s) 650, 952
Cac8I GCNNGC 5 cut(s) 142, 169, 250, 338, 615
CfoI GCGC 4 cut(s) 134, 231, 308, 961
Cfr10I RCCGGY 4 cut(s) 140, 580, 613, 676
Cfr13I GGNCC 9 cut(s) 153, 200, 319, 335, 352, 425, 436, 448, 905
Cfr42I CCGCGG 1 cut(s) 159
CseI GACGC 2 cut(s) 242, 305
Csp6I GTAC 1 cut(s) 1175
CviAII CATG 7 cut(s) 121, 316, 328, 637, 935, 1036, 1141
CviQI GTAC 1 cut(s) 1175
DdeI CTNAG 3 cut(s) 285, 881, 1105
DpnI GATC 3 cut(s) 816, 939, 1062
DpnII GATC 3 cut(s) 814, 937, 1060
DriI GACNNNNNGTC 1 cut(s) 64
EaeI YGGCCR 3 cut(s) 3, 123, 611
Eam1104I CTCTTC 2 cut(s) 347, 775
Eam1105I GACNNNNNGTC 1 cut(s) 64
EarI CTCTTC 2 cut(s) 347, 775
Eco24I GRGCYC 1 cut(s) 889
Eco31I GGTCTC 1 cut(s) 1185
Eco47I GGWCC 4 cut(s) 352, 436, 448, 905
Eco91I GGTNACC 1 cut(s) 662
EcoO65I GGTNACC 1 cut(s) 662
EcoRI GAATTC 1 cut(s) 1085
EcoRII CCWGG 2 cut(s) 179, 203
EcoT38I GRGCYC 1 cut(s) 889
FaeI CATG 7 cut(s) 124, 319, 331, 640, 938, 1039, 1144
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FaqI GGGAC 1 cut(s) 928
FatI CATG 7 cut(s) 120, 315, 327, 636, 934, 1035, 1140
FauI CCCGC 1 cut(s) 345
FauNDI CATATG 1 cut(s) 842
FbaI TGATCA 1 cut(s) 814
FriOI GRGCYC 1 cut(s) 889
FspBI CTAG 1 cut(s) 405
FspI TGCGCA 1 cut(s) 960
GlaI GCGC 4 cut(s) 133, 230, 307, 960
GsaI CCCAGC 1 cut(s) 915
HgaI GACGC 2 cut(s) 242, 305
HhaI GCGC 4 cut(s) 134, 231, 308, 961
Hin1I GRCGYC 3 cut(s) 147, 234, 297
Hin1II CATG 7 cut(s) 124, 319, 331, 640, 938, 1039, 1144
Hin6I GCGC 4 cut(s) 132, 229, 306, 959
HinP1I GCGC 4 cut(s) 132, 229, 306, 959
HinfI GANTC 4 cut(s) 59, 65, 754, 767
HphI GGTGA 3 cut(s) 283, 674, 1148
Hpy166II GTNNAC 1 cut(s) 291
Hpy188I TCNGA 7 cut(s) 13, 64, 94, 352, 415, 819, 1009
Hpy188III TCNNGA 8 cut(s) 170, 390, 707, 746, 851, 1064, 1115, 1242
Hpy8I GTNNAC 1 cut(s) 291
Hpy99I CGWCG 5 cut(s) 149, 236, 263, 299, 790
HpyAV CCTTC 2 cut(s) 539, 1127
HpyCH4III ACNGT 5 cut(s) 517, 673, 919, 1179, 1229
HpyCH4IV ACGT 5 cut(s) 114, 147, 258, 731, 788
HpyCH4V TGCA 3 cut(s) 1044, 1099, 1122
HpyF10VI GCNNNNNNNGC 6 cut(s) 131, 161, 164, 305, 401, 893
HpyF3I CTNAG 3 cut(s) 285, 881, 1105
HpySE526I ACGT 5 cut(s) 114, 147, 258, 731, 788
Hsp92I GRCGYC 3 cut(s) 147, 234, 297
Hsp92II CATG 7 cut(s) 124, 319, 331, 640, 938, 1039, 1144
HspAI GCGC 4 cut(s) 132, 229, 306, 959
Kpn2I TCCGGA 1 cut(s) 706
KroI GCCGGC 2 cut(s) 140, 613
KroNI GCCGGC 2 cut(s) 142, 615
Ksp22I TGATCA 1 cut(s) 814
KspI CCGCGG 1 cut(s) 159
Kzo9I GATC 3 cut(s) 814, 937, 1060
LguI GCTCTTC 1 cut(s) 347
LmnI GCTCC 5 cut(s) 81, 184, 195, 273, 721
Lsp1109I GCAGC 2 cut(s) 199, 816
LweI GCATC 1 cut(s) 465
MaeI CTAG 1 cut(s) 405
MaeII ACGT 5 cut(s) 114, 147, 258, 731, 788
MaeIII GTNAC 5 cut(s) 367, 452, 662, 919, 1136
MalI GATC 3 cut(s) 816, 939, 1062
MbiI CCGCTC 2 cut(s) 167, 340
MboI GATC 3 cut(s) 814, 937, 1060
MboII GAAGA 4 cut(s) 334, 535, 762, 1022
MhlI GDGCHC 3 cut(s) 99, 784, 889
MlsI TGGCCA 2 cut(s) 5, 125
MluCI AATT 4 cut(s) 430, 694, 1085, 1109
MluNI TGGCCA 2 cut(s) 5, 125
MlyI GAGTC 3 cut(s) 53, 74, 761
MmeI TCCRAC 2 cut(s) 36, 949
Mox20I TGGCCA 2 cut(s) 5, 125
MreI CGCCGGCG 1 cut(s) 140
MroI TCCGGA 1 cut(s) 706
MroNI GCCGGC 2 cut(s) 140, 613
MroXI GAANNNNTTC 1 cut(s) 1085
MscI TGGCCA 2 cut(s) 5, 125
MseI TTAA 1 cut(s) 554
MslI CAYNNNNRTG 2 cut(s) 948, 1159
Msp20I TGGCCA 2 cut(s) 5, 125
MspA1I CMGCKG 2 cut(s) 158, 284
MspR9I CCNGG 5 cut(s) 152, 181, 205, 573, 1091
MvaI CCWGG 2 cut(s) 181, 205
MvnI CGCG 6 cut(s) 132, 158, 171, 231, 306, 1235
MwoI GCNNNNNNNGC 6 cut(s) 131, 161, 164, 305, 401, 893
NaeI GCCGGC 2 cut(s) 142, 615
NciI CCSGG 3 cut(s) 152, 573, 1091
NdeI CATATG 1 cut(s) 842
NdeII GATC 3 cut(s) 814, 937, 1060
NgoMIV GCCGGC 2 cut(s) 140, 613
NlaIII CATG 7 cut(s) 124, 319, 331, 640, 938, 1039, 1144
NlaIV GGNNCC 4 cut(s) 202, 427, 675, 781
NmuCI GTSAC 4 cut(s) 367, 452, 662, 1136
NruI TCGCGA 1 cut(s) 171
NsbI TGCGCA 1 cut(s) 960
NspI RCATGY 1 cut(s) 1144
OliI CACNNNNGTG 1 cut(s) 1159
PaqCI CACCTGC 1 cut(s) 650
PciSI GCTCTTC 1 cut(s) 347
PdiI GCCGGC 2 cut(s) 142, 615
PdmI GAANNNNTTC 1 cut(s) 1085
PfeI GAWTC 1 cut(s) 754
PfoI TCCNGGA 1 cut(s) 1089
PleI GAGTC 3 cut(s) 53, 73, 761
PpsI GAGTC 3 cut(s) 53, 73, 761
PshAI GACNNNNGTC 2 cut(s) 374, 441
Psp6I CCWGG 2 cut(s) 179, 203
PspEI GGTNACC 1 cut(s) 662
PspFI CCCAGC 1 cut(s) 911
PspGI CCWGG 2 cut(s) 179, 203
PspN4I GGNNCC 4 cut(s) 202, 427, 675, 781
PspPI GGNCC 9 cut(s) 153, 200, 319, 335, 352, 425, 436, 448, 905
RruI TCGCGA 1 cut(s) 171
RsaI GTAC 1 cut(s) 1176
RsaNI GTAC 1 cut(s) 1175
RseI CAYNNNNRTG 2 cut(s) 948, 1159
SacII CCGCGG 1 cut(s) 159
SapI GCTCTTC 1 cut(s) 347
SaqAI TTAA 1 cut(s) 554
Sau3AI GATC 3 cut(s) 814, 937, 1060
Sau96I GGNCC 9 cut(s) 153, 200, 319, 335, 352, 425, 436, 448, 905
SchI GAGTC 3 cut(s) 53, 74, 761
ScrFI CCNGG 5 cut(s) 152, 181, 205, 573, 1091
SduI GDGCHC 3 cut(s) 99, 784, 889
SfaNI GCATC 1 cut(s) 465
SfiI GGCCNNNNNGGCC 1 cut(s) 161
Sfr303I CCGCGG 1 cut(s) 159
SgrAI CRCCGGYG 1 cut(s) 140
SgrBI CCGCGG 1 cut(s) 159
SinI GGWCC 4 cut(s) 352, 436, 448, 905
SmiMI CAYNNNNRTG 2 cut(s) 948, 1159
SmlI CTYRAG 2 cut(s) 746, 1048
SmoI CTYRAG 2 cut(s) 746, 1048
Sse9I AATT 4 cut(s) 430, 694, 1085, 1109
SspMI CTAG 1 cut(s) 405
StyD4I CCNGG 5 cut(s) 150, 179, 203, 571, 1089
TaaI ACNGT 5 cut(s) 517, 673, 919, 1179, 1229
TaiI ACGT 5 cut(s) 117, 150, 261, 734, 791
TaqI TCGA 2 cut(s) 57, 312
TaqII GACCGA 1 cut(s) 608
TasI AATT 4 cut(s) 430, 694, 1085, 1109
TfiI GAWTC 1 cut(s) 754
Tru1I TTAA 1 cut(s) 554
Tru9I TTAA 1 cut(s) 554
TseFI GTSAC 4 cut(s) 367, 452, 662, 1136
TseI GCWGC 2 cut(s) 187, 829
Tsp45I GTSAC 4 cut(s) 367, 452, 662, 1136
TspDTI ATGAA 1 cut(s) 990
TspGWI ACGGA 3 cut(s) 202, 440, 485
VpaK11BI GGWCC 4 cut(s) 352, 436, 448, 905
XapI RAATTY 2 cut(s) 1085, 1109
XceI RCATGY 1 cut(s) 1144
XcmI CCANNNNNNNNNTGG 1 cut(s) 1161
XmnI GAANNNNTTC 1 cut(s) 1085
XspI CTAG 1 cut(s) 405
ZraI GACGTC 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.