Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005300

Physical Location & Seq

Genomic Coordinates Reverse (-)

1911627 .. 1912524

Gene Structure 898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1022300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTCCCAATTCGGACCGCCGATTGGTCCGGCAAGACGTCGTCTCGGAGGAGGTGAGTTGCTTGGAGTTTTGCCCAGAAAGTCACCTTCTTGTAAAATGGTTGTGAAGAGATCAGGTCTATCTTTGGAGGGATTTTCGAGCGAGTACTTGTTACCGGGTTGCCCGGTGATAATAACCGATGGCATGGATCATTGGCCGGCCAGGAGTAAATGGCATGGATCATTAACCGGTGATCGCACCGTGCCAGTTGAGGTCGGGAAAAATTATGTGTACCCGGAGTGGAAGCAAGAGCTTATTACGTTTTCCCAGTTTCTTGAGAGGTTCAGGCTAATGGCTCTGCTTCTGCTGTCCCAACGTATCTTGCTCAGCATCCATTGTTTGATCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003700 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0007623 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008214 GO:0008276 GO:0008757 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010452 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016278 GO:0016279 GO:0016491 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032451 GO:0032452 GO:0034968 GO:0036211 GO:0042054 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0046975 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:0140110 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

130

Amino Acids

14.52

Weight (kDa)

9.78

Isoelectric Point (pI)

69.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20810 AT3G20810 AT3G20810 AT3G20810 AT3G20810
fragaria_vesca	FvH4_3g43600
malus_domestica	MD03G1020700.v1.1 MD11G1022300.v1.1
prunus_persica	Prupe.6G015700_v2.0.a1
pyrus_communis	pycom03g01760 pycom11g01790
rosa_chinensis	RchiOBHm_Chr5g0078171 RchiOBHm_Chr5g0078191 RchiOBHm_Chr5g0078281 RchiOBHm_Chr5g0078291
rosa_laevigata	RLG00000036759 RLG00000036763
rosa_multiflora	Rmu_sc0000631.1_g000035 Rmu_sc0005194.1_g000006
rosa_roxburghii	Rroxscaffold_1G00003960
rosa_rugosa	Rorug03G0196500 Rorug05G0459500.1 Rorug05G0459800
rosa_samantha	Rh5AG513800 Rh5BG536800 Rh5CG560200 Rh5DG548400 Rh6BG257500
rosa_wichuraiana	Rw5G047680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	40
AciI	CCGC	1 cut(s)	17
AclWI	GGATC	2 cut(s)	195, 226
AcoI	YGGCCR	2 cut(s)	194, 198
AcyI	GRCGYC	1 cut(s)	37
AfaI	GTAC	2 cut(s)	146, 272
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgeI	ACCGGT	1 cut(s)	227
AjnI	CCWGG	1 cut(s)	200
AluBI	AGCT	1 cut(s)	292
AluI	AGCT	1 cut(s)	292
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	2 cut(s)	195, 226
AoxI	GGCC	2 cut(s)	194, 198
AsiGI	ACCGGT	1 cut(s)	227
AspS9I	GGNCC	2 cut(s)	14, 26
AsuC2I	CCSGG	3 cut(s)	156, 164, 275
AsuHPI	GGTGA	4 cut(s)	65, 75, 178, 242
AvaII	GGWCC	2 cut(s)	14, 26
BccI	CCATC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	202
BclI	TGATCA	1 cut(s)	381
BcnI	CCSGG	3 cut(s)	156, 164, 275
BcoDI	GTCTC	1 cut(s)	47
BlpI	GCTNAGC	1 cut(s)	365
BmcAI	AGTACT	1 cut(s)	146
Bme1390I	CCNGG	4 cut(s)	156, 164, 202, 275
Bme18I	GGWCC	2 cut(s)	14, 26
BmgT120I	GGNCC	2 cut(s)	14, 26
BmrFI	CCNGG	4 cut(s)	156, 164, 202, 275
BmrI	ACTGGG	1 cut(s)	301
BmsI	GCATC	1 cut(s)	378
BmuI	ACTGGG	1 cut(s)	301
Bpu1102I	GCTNAGC	1 cut(s)	365
BpuEI	CTTGAG	1 cut(s)	335
BpuMI	CCSGG	3 cut(s)	156, 164, 275
BsaHI	GRCGYC	1 cut(s)	37
BsaWI	WCCGGW	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse118I	RCCGGY	2 cut(s)	196, 227
Bse1I	ACTGG	2 cut(s)	245, 307
BseBI	CCWGG	1 cut(s)	202
BseGI	GGATG	1 cut(s)	369
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMII	CTCAG	1 cut(s)	379
BseNI	ACTGG	2 cut(s)	245, 307
BseRI	GAGGAG	1 cut(s)	63
BshFI	GGCC	2 cut(s)	196, 200
BshTI	ACCGGT	1 cut(s)	227
BsiSI	CCGG	6 cut(s)	29, 155, 164, 197, 228, 275
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	47
BsmBI	CGTCTC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	334
BsnI	GGCC	2 cut(s)	196, 200
Bsp143I	GATC	5 cut(s)	110, 187, 218, 232, 381
Bsp1720I	GCTNAGC	1 cut(s)	365
BspACI	CCGC	1 cut(s)	17
BspANI	GGCC	2 cut(s)	196, 200
BspCNI	CTCAG	1 cut(s)	378
BspPI	GGATC	2 cut(s)	195, 226
BsrFI	RCCGGY	2 cut(s)	196, 227
BsrI	ACTGG	2 cut(s)	245, 307
BssAI	RCCGGY	2 cut(s)	196, 227
BssMI	GATC	5 cut(s)	110, 187, 218, 232, 381
BssNI	GRCGYC	1 cut(s)	37
Bst2UI	CCWGG	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	101
BstACI	GRCGYC	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	198
BstDEI	CTNAG	1 cut(s)	365
BstF5I	GGATG	1 cut(s)	369
BstKTI	GATC	5 cut(s)	113, 190, 221, 235, 384
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	5 cut(s)	110, 187, 218, 232, 381
BstNI	CCWGG	1 cut(s)	202
BstSCI	CCNGG	4 cut(s)	154, 162, 200, 273
BsuRI	GGCC	2 cut(s)	196, 200
BtsCI	GGATG	1 cut(s)	369
Cac8I	GCNNGC	1 cut(s)	198
Cfr10I	RCCGGY	2 cut(s)	196, 227
Cfr13I	GGNCC	2 cut(s)	14, 26
CpoI	CGGWCCG	1 cut(s)	14
Csp6I	GTAC	2 cut(s)	145, 271
CspAI	ACCGGT	1 cut(s)	227
CspI	CGGWCCG	1 cut(s)	14
CviAII	CATG	2 cut(s)	184, 215
CviJI	RGCY	5 cut(s)	196, 200, 292, 328, 335
CviKI_1	RGCY	5 cut(s)	196, 200, 292, 328, 335
CviQI	GTAC	2 cut(s)	145, 271
DdeI	CTNAG	1 cut(s)	365
DpnI	GATC	5 cut(s)	112, 189, 220, 234, 383
DpnII	GATC	5 cut(s)	110, 187, 218, 232, 381
EaeI	YGGCCR	2 cut(s)	194, 198
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Eco47I	GGWCC	2 cut(s)	14, 26
EcoRII	CCWGG	1 cut(s)	200
Esp3I	CGTCTC	1 cut(s)	47
FaeI	CATG	2 cut(s)	187, 218
FaiI	YATR	3 cut(s)	185, 216, 267
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	2 cut(s)	183, 214
FbaI	TGATCA	1 cut(s)	381
FokI	GGATG	1 cut(s)	356
FseI	GGCCGGCC	1 cut(s)	200
HaeIII	GGCC	2 cut(s)	196, 200
HapII	CCGG	6 cut(s)	29, 155, 164, 197, 228, 275
Hin1I	GRCGYC	1 cut(s)	37
Hin1II	CATG	2 cut(s)	187, 218
HpaII	CCGG	6 cut(s)	29, 155, 164, 197, 228, 275
HphI	GGTGA	4 cut(s)	65, 75, 178, 242
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	3 cut(s)	14, 47, 386
Hpy188III	TCNNGA	2 cut(s)	256, 314
Hpy8I	GTNNAC	1 cut(s)	271
Hpy99I	CGWCG	1 cut(s)	42
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4IV	ACGT	3 cut(s)	37, 299, 355
HpyF3I	CTNAG	1 cut(s)	365
HpySE526I	ACGT	3 cut(s)	37, 299, 355
Hsp92I	GRCGYC	1 cut(s)	37
Hsp92II	CATG	2 cut(s)	187, 218
KroI	GCCGGC	1 cut(s)	196
KroNI	GCCGGC	1 cut(s)	198
Ksp22I	TGATCA	1 cut(s)	381
Kzo9I	GATC	5 cut(s)	110, 187, 218, 232, 381
LweI	GCATC	1 cut(s)	378
MaeII	ACGT	3 cut(s)	37, 299, 355
MaeIII	GTNAC	2 cut(s)	81, 150
MalI	GATC	5 cut(s)	112, 189, 220, 234, 383
MboI	GATC	5 cut(s)	110, 187, 218, 232, 381
MboII	GAAGA	1 cut(s)	118
MluCI	AATT	2 cut(s)	8, 262
MnlI	CCTC	5 cut(s)	41, 44, 121, 244, 312
MroNI	GCCGGC	1 cut(s)	196
MseI	TTAA	1 cut(s)	224
MspI	CCGG	6 cut(s)	29, 155, 164, 197, 228, 275
MspR9I	CCNGG	4 cut(s)	156, 164, 202, 275
MvaI	CCWGG	1 cut(s)	202
NaeI	GCCGGC	1 cut(s)	198
NciI	CCSGG	3 cut(s)	156, 164, 275
NdeII	GATC	5 cut(s)	110, 187, 218, 232, 381
NgoMIV	GCCGGC	1 cut(s)	196
NlaIII	CATG	2 cut(s)	187, 218
NmuCI	GTSAC	1 cut(s)	81
PdiI	GCCGGC	1 cut(s)	198
PflFI	GACNNNGTC	1 cut(s)	39
PinAI	ACCGGT	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	200
PspPI	GGNCC	2 cut(s)	14, 26
PsyI	GACNNNGTC	1 cut(s)	39
RigI	GGCCGGCC	1 cut(s)	200
RsaI	GTAC	2 cut(s)	146, 272
RsaNI	GTAC	2 cut(s)	145, 271
Rsr2I	CGGWCCG	1 cut(s)	14
RsrII	CGGWCCG	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	224
Sau3AI	GATC	5 cut(s)	110, 187, 218, 232, 381
Sau96I	GGNCC	2 cut(s)	14, 26
ScaI	AGTACT	1 cut(s)	146
ScrFI	CCNGG	4 cut(s)	156, 164, 202, 275
SetI	ASST	9 cut(s)	40, 55, 88, 118, 255, 294, 302, 323, 358
SfaNI	GCATC	1 cut(s)	378
SinI	GGWCC	2 cut(s)	14, 26
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	2 cut(s)	8, 262
SsiI	CCGC	1 cut(s)	17
StyD4I	CCNGG	4 cut(s)	154, 162, 200, 273
TaaI	ACNGT	1 cut(s)	241
TaiI	ACGT	3 cut(s)	40, 302, 358
TaqI	TCGA	1 cut(s)	137
TasI	AATT	2 cut(s)	8, 262
TatI	WGTACW	1 cut(s)	144
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TseFI	GTSAC	1 cut(s)	81
Tsp45I	GTSAC	1 cut(s)	81
Tth111I	GACNNNGTC	1 cut(s)	39
VpaK11BI	GGWCC	2 cut(s)	14, 26
ZraI	GACGTC	1 cut(s)	38
ZrmI	AGTACT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.