FvH4_4g01120

Protein TIFY 4B-like isoform X1

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
1053049 .. 1057873
4825 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g01120.t2

Sequence Viewer

Length: 1035 bp
ATGAGCGGCGGCGGCGGCACCACGACGACGACGTCGTTTCGGACCATCCTCGAGAAGCCGCTCAACCAGCTCACCGAGGATGACATTTCTCAGCTCACCCGAGAAGACTGCCGCAACTACCTCAAAGAAAAAGGAATGCGGAGGCCTTCGTGGAACAAATCGCAGGCGATCCAGCAGGTTATTTCACTCAAGGCGCTGCTAGAGCCCAACGACGAATCCAGCGCCGGAGTTCTCCGAAAAATCGTTGGTCCGCCTCATGGCGGTCCGCCTCACGGCGCCGCCCCTCGGGCGGCTTCGAATTCGACCGATTCAGCTAAGGAGGCCAGTGCCGATGTGCAGGGTTCCAAGTCCGCTGAAGAACCGGTGCCGCAGCAGAAGAAAGAACCGCAAAAACCGGTTCGGCAGGACCGGCCGGCCGAACCGGCTGTGAAAGTAGTTACTCCCAGCAAAAATCAGTGCACAACCGATGCATCAGTTAGGCAAATGACAATTTTCTACTGCGGCAAGGTGAATGTGTATGATGGAGTGCCACCAGATAAGGCACGAACAATAATGCACTTTGCAGCAAGGCCGAACCATTTGCCTCTGGACAATCAATATAGTGGAACTGCAGCAGCTAGGTCCTTGCGATGCCAATTTCAGAATGCAGGTGACAAAGATGCCCCTTTCCCACCTAATGCCACAATCCCTCTAGCAATGCAACCAGATAGGATTGCGGACTATACTCAGCTGTACTGGGATAAAGGGAACAACACTCGTGATCCTGAGGGTCAGGCAAGTAGAAAAGTCTCGTTGCAGAGATACCGTGAAAAGCGAAAAGACAGGGAACGAGTAAAGATTAAGAAAAATATGGGACCAACTTCTACCTTGGAGGTTTATTTGAATCAACAACTCAGGAGACACCCCTCAAATGGAGATTCAAGTAGGAGTAGCACAGGCTCTCCGCCCCAGCAACCTGGGCTGCTTCAAGTAGCTGACAATCAGATTCGCTGTCTTCCTGTTGACCTAAATGAAAATGAGATCTTGGACTGCTGA

Protein Analysis

345

Amino Acids

37.98

Weight (kDa)

9.28

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 160 - 189 1.3e-15 tify domain
Jas_motif PF09425 259 - 275 4.6e-06 Jas motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 638
AasI GACNNNNNNGTC 1 cut(s) 31
AatII GACGTC 1 cut(s) 35
Acc36I ACCTGC 2 cut(s) 166, 638
AccB1I GGYRCC 3 cut(s) 17, 275, 364
AccBSI CCGCTC 2 cut(s) 6, 61
AclWI GGATC 2 cut(s) 163, 755
AcoI YGGCCR 2 cut(s) 410, 414
AcsI RAATTY 1 cut(s) 298
AcuI CTGAAG 1 cut(s) 375
AcyI GRCGYC 2 cut(s) 32, 276
AfaI GTAC 1 cut(s) 734
AfiI CCNNNNNNNGG 6 cut(s) 257, 260, 272, 285, 289, 911
AgeI ACCGGT 2 cut(s) 361, 394
AgsI TTSAA 3 cut(s) 883, 921, 968
AjnI CCWGG 1 cut(s) 955
AluBI AGCT 6 cut(s) 70, 94, 314, 617, 730, 974
AluI AGCT 6 cut(s) 70, 94, 314, 617, 730, 974
Alw21I GWGCWC 1 cut(s) 461
Alw26I GTCTC 2 cut(s) 793, 892
Alw44I GTGCAC 1 cut(s) 457
AlwI GGATC 2 cut(s) 163, 755
Ama87I CYCGRG 3 cut(s) 50, 99, 285
AoxI GGCC 5 cut(s) 143, 321, 410, 414, 569
ApaLI GTGCAC 1 cut(s) 457
ApeKI GCWGC 6 cut(s) 196, 370, 563, 611, 614, 961
ApoI RAATTY 1 cut(s) 298
AsiGI ACCGGT 2 cut(s) 361, 394
AspLEI GCGC 3 cut(s) 196, 224, 278
AspS9I GGNCC 6 cut(s) 42, 248, 263, 406, 621, 854
AsuHPI GGTGA 4 cut(s) 64, 88, 520, 662
AsuII TTCGAA 1 cut(s) 296
AvaI CYCGRG 3 cut(s) 50, 99, 285
AvaII GGWCC 6 cut(s) 42, 248, 263, 406, 621, 854
AxyI CCTNAGG 1 cut(s) 765
BaeGI GKGCMC 1 cut(s) 461
BanI GGYRCC 3 cut(s) 17, 275, 364
BanII GRGCYC 1 cut(s) 207
BauI CACGAG 1 cut(s) 756
BbsI GAAGAC 2 cut(s) 111, 986
Bbv12I GWGCWC 1 cut(s) 461
BbvI GCAGC 6 cut(s) 183, 382, 575, 623, 626, 948
BccI CCATC 2 cut(s) 53, 515
BceAI ACGGC 1 cut(s) 289
BcgI CGANNNNNNTGC 4 cut(s) 90, 124, 562, 596
BciT130I CCWGG 1 cut(s) 957
BcoDI GTCTC 2 cut(s) 793, 892
BfaI CTAG 3 cut(s) 200, 618, 692
BfmI CTRYAG 1 cut(s) 609
BfoI RGCGCY 3 cut(s) 197, 225, 279
BfuAI ACCTGC 2 cut(s) 166, 638
BglI GCCNNNNNGGC 2 cut(s) 287, 422
BglII AGATCT 1 cut(s) 1020
Bme1390I CCNGG 1 cut(s) 957
Bme18I GGWCC 6 cut(s) 42, 248, 263, 406, 621, 854
BmeT110I CYCGRG 3 cut(s) 50, 99, 285
BmgT120I GGNCC 6 cut(s) 42, 248, 263, 406, 621, 854
BmiI GGNNCC 5 cut(s) 19, 277, 343, 366, 855
BmrFI CCNGG 1 cut(s) 957
BmrI ACTGGG 1 cut(s) 745
BmsI GCATC 4 cut(s) 457, 479, 620, 649
BmuI ACTGGG 1 cut(s) 745
BpiI GAAGAC 2 cut(s) 111, 986
Bpu10I CCTNAGC 1 cut(s) 315
Bpu14I TTCGAA 1 cut(s) 296
BpuEI CTTGAG 1 cut(s) 173
BsaHI GRCGYC 2 cut(s) 32, 276
BsaJI CCNNGG 4 cut(s) 75, 284, 867, 956
BsaWI WCCGGW 2 cut(s) 361, 394
BsaXI ACNNNNNCTCC 2 cut(s) 925, 955
Bsc4I CCNNNNNNNGG 6 cut(s) 257, 260, 272, 285, 289, 911
Bse118I RCCGGY 5 cut(s) 361, 394, 408, 412, 421
Bse1I ACTGG 2 cut(s) 324, 740
Bse21I CCTNAGG 1 cut(s) 765
Bse3DI GCAATG 1 cut(s) 702
BseBI CCWGG 1 cut(s) 957
BseDI CCNNGG 4 cut(s) 75, 284, 867, 956
BseGI GGATG 2 cut(s) 45, 85
BseLI CCNNNNNNNGG 6 cut(s) 257, 260, 272, 285, 289, 911
BseMI GCAATG 1 cut(s) 702
BseMII CTCAG 4 cut(s) 104, 740, 756, 907
BseNI ACTGG 2 cut(s) 324, 740
BseSI GKGCMC 1 cut(s) 461
BseX3I CGGCCG 2 cut(s) 410, 414
BseXI GCAGC 6 cut(s) 183, 382, 575, 623, 626, 948
BseYI CCCAGC 2 cut(s) 443, 948
BsgI GTGCAG 1 cut(s) 356
Bsh1285I CGRYCG 3 cut(s) 306, 413, 417
BshFI GGCC 5 cut(s) 145, 323, 412, 416, 571
BshNI GGYRCC 3 cut(s) 17, 275, 364
BshTI ACCGGT 2 cut(s) 361, 394
BsiEI CGRYCG 3 cut(s) 306, 413, 417
BsiHKAI GWGCWC 1 cut(s) 461
BsiHKCI CYCGRG 3 cut(s) 50, 99, 285
BsiSI CCGG 6 cut(s) 225, 362, 395, 409, 413, 422
BslFI GGGAC 1 cut(s) 867
BslI CCNNNNNNNGG 6 cut(s) 257, 260, 272, 285, 289, 911
BsmAI GTCTC 2 cut(s) 793, 892
BsmFI GGGAC 1 cut(s) 867
BsmI GAATGC 2 cut(s) 141, 649
BsnI GGCC 5 cut(s) 145, 323, 412, 416, 571
BsoBI CYCGRG 3 cut(s) 50, 99, 285
Bsp119I TTCGAA 1 cut(s) 296
Bsp1286I GDGCHC 2 cut(s) 207, 461
Bsp143I GATC 3 cut(s) 168, 760, 1020
BspANI GGCC 5 cut(s) 145, 323, 412, 416, 571
BspCNI CTCAG 4 cut(s) 103, 739, 757, 906
BspLI GGNNCC 5 cut(s) 19, 277, 343, 366, 855
BspMAI CTGCAG 1 cut(s) 613
BspMI ACCTGC 2 cut(s) 166, 638
BspPI GGATC 2 cut(s) 163, 755
BspT104I TTCGAA 1 cut(s) 296
BspT107I GGYRCC 3 cut(s) 17, 275, 364
BsrBI CCGCTC 2 cut(s) 6, 61
BsrDI GCAATG 1 cut(s) 702
BsrFI RCCGGY 5 cut(s) 361, 394, 408, 412, 421
BsrI ACTGG 2 cut(s) 324, 740
BssAI RCCGGY 5 cut(s) 361, 394, 408, 412, 421
BssECI CCNNGG 4 cut(s) 75, 284, 867, 956
BssMI GATC 3 cut(s) 168, 760, 1020
BssNI GRCGYC 2 cut(s) 32, 276
BssSI CACGAG 1 cut(s) 756
BssT1I CCWWGG 1 cut(s) 867
Bst2BI CACGAG 1 cut(s) 756
Bst2UI CCWGG 1 cut(s) 957
Bst4CI ACNGT 1 cut(s) 806
BstACI GRCGYC 2 cut(s) 32, 276
BstBI TTCGAA 1 cut(s) 296
BstC8I GCNNGC 2 cut(s) 165, 414
BstDEI CTNAG 5 cut(s) 90, 315, 726, 765, 893
BstF5I GGATG 2 cut(s) 45, 85
BstH2I RGCGCY 3 cut(s) 197, 225, 279
BstHHI GCGC 3 cut(s) 196, 224, 278
BstKTI GATC 3 cut(s) 171, 763, 1023
BstMAI GTCTC 2 cut(s) 793, 892
BstMBI GATC 3 cut(s) 168, 760, 1020
BstMCI CGRYCG 3 cut(s) 306, 413, 417
BstMWI GCNNNNNNNGC 9 cut(s) 12, 15, 67, 202, 287, 320, 409, 422, 958
BstNI CCWGG 1 cut(s) 957
BstSCI CCNGG 1 cut(s) 955
BstSFI CTRYAG 1 cut(s) 609
BstSLI GKGCMC 1 cut(s) 461
BstV1I GCAGC 6 cut(s) 183, 382, 575, 623, 626, 948
BstV2I GAAGAC 2 cut(s) 111, 986
BstX2I RGATCY 1 cut(s) 1020
BstXI CCANNNNNNTGG 1 cut(s) 956
BstYI RGATCY 1 cut(s) 1020
BstZI CGGCCG 2 cut(s) 410, 414
Bsu36I CCTNAGG 1 cut(s) 765
BsuRI GGCC 5 cut(s) 145, 323, 412, 416, 571
BtgZI GCGATG 1 cut(s) 643
BtsCI GGATG 2 cut(s) 45, 85
BtsIMutI CAGTG 2 cut(s) 331, 461
BveI ACCTGC 2 cut(s) 166, 638
Cac8I GCNNGC 2 cut(s) 165, 414
CfoI GCGC 3 cut(s) 196, 224, 278
Cfr10I RCCGGY 5 cut(s) 361, 394, 408, 412, 421
Cfr13I GGNCC 6 cut(s) 42, 248, 263, 406, 621, 854
CpoI CGGWCCG 1 cut(s) 263
Csp6I GTAC 1 cut(s) 733
CspAI ACCGGT 2 cut(s) 361, 394
CspI CGGWCCG 1 cut(s) 263
CviAII CATG 1 cut(s) 257
CviQI GTAC 1 cut(s) 733
DdeI CTNAG 5 cut(s) 90, 315, 726, 765, 893
DinI GGCGCC 1 cut(s) 277
DpnI GATC 3 cut(s) 170, 762, 1022
DpnII GATC 3 cut(s) 168, 760, 1020
DrdI GACNNNNNNGTC 1 cut(s) 31
DseDI GACNNNNNNGTC 1 cut(s) 31
EaeI YGGCCR 2 cut(s) 410, 414
EagI CGGCCG 2 cut(s) 410, 414
EciI GGCGGA 3 cut(s) 240, 255, 933
EclXI CGGCCG 2 cut(s) 410, 414
Eco130I CCWWGG 1 cut(s) 867
Eco147I AGGCCT 1 cut(s) 145
Eco24I GRGCYC 1 cut(s) 207
Eco47I GGWCC 6 cut(s) 42, 248, 263, 406, 621, 854
Eco52I CGGCCG 2 cut(s) 410, 414
Eco57I CTGAAG 1 cut(s) 375
Eco81I CCTNAGG 1 cut(s) 765
Eco88I CYCGRG 3 cut(s) 50, 99, 285
EcoO109I RGGNCCY 1 cut(s) 621
EcoRI GAATTC 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 955
EcoT14I CCWWGG 1 cut(s) 867
EcoT22I ATGCAT 1 cut(s) 472
EcoT38I GRGCYC 1 cut(s) 207
EgeI GGCGCC 1 cut(s) 277
EheI GGCGCC 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 867
FaeI CATG 1 cut(s) 260
FaiI YATR 5 cut(s) 258, 519, 600, 723, 851
FaqI GGGAC 1 cut(s) 867
FatI CATG 1 cut(s) 256
FokI GGATG 2 cut(s) 32, 92
FriOI GRGCYC 1 cut(s) 207
FseI GGCCGGCC 1 cut(s) 416
FspBI CTAG 3 cut(s) 200, 618, 692
GlaI GCGC 3 cut(s) 195, 223, 277
GsaI CCCAGC 2 cut(s) 447, 952
HaeII RGCGCY 3 cut(s) 197, 225, 279
HaeIII GGCC 5 cut(s) 145, 323, 412, 416, 571
HapII CCGG 6 cut(s) 225, 362, 395, 409, 413, 422
HhaI GCGC 3 cut(s) 196, 224, 278
Hin1I GRCGYC 2 cut(s) 32, 276
Hin1II CATG 1 cut(s) 260
Hin6I GCGC 3 cut(s) 194, 222, 276
HinP1I GCGC 3 cut(s) 194, 222, 276
HincII GTYRAC 1 cut(s) 1003
HindII GTYRAC 1 cut(s) 1003
HinfI GANTC 5 cut(s) 215, 308, 883, 917, 985
HpaII CCGG 6 cut(s) 225, 362, 395, 409, 413, 422
HphI GGTGA 4 cut(s) 64, 88, 520, 662
Hpy166II GTNNAC 2 cut(s) 459, 1003
Hpy188I TCNGA 4 cut(s) 42, 236, 642, 984
Hpy188III TCNNGA 5 cut(s) 52, 587, 758, 764, 895
Hpy8I GTNNAC 2 cut(s) 459, 1003
Hpy99I CGWCG 5 cut(s) 28, 31, 34, 37, 215
HpyAV CCTTC 1 cut(s) 156
HpyCH4III ACNGT 1 cut(s) 806
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 9 cut(s) 337, 459, 470, 556, 563, 611, 647, 700, 796
HpyF10VI GCNNNNNNNGC 9 cut(s) 12, 15, 67, 202, 287, 320, 409, 422, 958
HpyF3I CTNAG 5 cut(s) 90, 315, 726, 765, 893
HpySE526I ACGT 1 cut(s) 32
Hsp92I GRCGYC 2 cut(s) 32, 276
Hsp92II CATG 1 cut(s) 260
HspAI GCGC 3 cut(s) 194, 222, 276
KasI GGCGCC 1 cut(s) 275
KroI GCCGGC 1 cut(s) 412
KroNI GCCGGC 1 cut(s) 414
Kzo9I GATC 3 cut(s) 168, 760, 1020
Lsp1109I GCAGC 6 cut(s) 183, 382, 575, 623, 626, 948
LweI GCATC 4 cut(s) 457, 479, 620, 649
MaeI CTAG 3 cut(s) 200, 618, 692
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 2 cut(s) 436, 650
MalI GATC 3 cut(s) 170, 762, 1022
MbiI CCGCTC 2 cut(s) 6, 61
MboI GATC 3 cut(s) 168, 760, 1020
MboII GAAGA 4 cut(s) 116, 368, 388, 986
MflI RGATCY 1 cut(s) 1020
MhlI GDGCHC 2 cut(s) 207, 461
MluCI AATT 3 cut(s) 298, 489, 635
Mly113I GGCGCC 1 cut(s) 276
Mph1103I ATGCAT 1 cut(s) 472
MroNI GCCGGC 1 cut(s) 412
MseI TTAA 1 cut(s) 840
MspA1I CMGCKG 2 cut(s) 353, 730
MspI CCGG 6 cut(s) 225, 362, 395, 409, 413, 422
MspR9I CCNGG 1 cut(s) 957
Mva1269I GAATGC 2 cut(s) 141, 649
MvaI CCWGG 1 cut(s) 957
MwoI GCNNNNNNNGC 9 cut(s) 12, 15, 67, 202, 287, 320, 409, 422, 958
NaeI GCCGGC 1 cut(s) 414
NarI GGCGCC 1 cut(s) 276
NdeII GATC 3 cut(s) 168, 760, 1020
NgoMIV GCCGGC 1 cut(s) 412
NlaIII CATG 1 cut(s) 260
NlaIV GGNNCC 5 cut(s) 19, 277, 343, 366, 855
NmuCI GTSAC 1 cut(s) 650
NsiI ATGCAT 1 cut(s) 472
NspV TTCGAA 1 cut(s) 296
PaeR7I CTCGAG 1 cut(s) 50
PaqCI CACCTGC 1 cut(s) 638
PceI AGGCCT 1 cut(s) 145
PcsI WCGNNNNNNNCGW 2 cut(s) 29, 32
PctI GAATGC 2 cut(s) 141, 649
PdiI GCCGGC 1 cut(s) 414
PfeI GAWTC 5 cut(s) 215, 308, 883, 917, 985
PflFI GACNNNGTC 1 cut(s) 31
PinAI ACCGGT 2 cut(s) 361, 394
PluTI GGCGCC 1 cut(s) 279
PpuMI RGGWCCY 1 cut(s) 621
Psp5II RGGWCCY 1 cut(s) 621
Psp6I CCWGG 1 cut(s) 955
PspFI CCCAGC 2 cut(s) 443, 948
PspGI CCWGG 1 cut(s) 955
PspN4I GGNNCC 5 cut(s) 19, 277, 343, 366, 855
PspPI GGNCC 6 cut(s) 42, 248, 263, 406, 621, 854
PspPPI RGGWCCY 1 cut(s) 621
PstI CTGCAG 1 cut(s) 613
PsuI RGATCY 1 cut(s) 1020
PsyI GACNNNGTC 1 cut(s) 31
PvuII CAGCTG 1 cut(s) 730
RigI GGCCGGCC 1 cut(s) 416
RsaI GTAC 1 cut(s) 734
RsaNI GTAC 1 cut(s) 733
Rsr2I CGGWCCG 1 cut(s) 263
RsrII CGGWCCG 1 cut(s) 263
SaqAI TTAA 1 cut(s) 840
Sau3AI GATC 3 cut(s) 168, 760, 1020
Sau96I GGNCC 6 cut(s) 42, 248, 263, 406, 621, 854
ScrFI CCNGG 1 cut(s) 957
SduI GDGCHC 2 cut(s) 207, 461
SfaNI GCATC 4 cut(s) 457, 479, 620, 649
SfcI CTRYAG 1 cut(s) 609
SfoI GGCGCC 1 cut(s) 277
Sfr274I CTCGAG 1 cut(s) 50
SfuI TTCGAA 1 cut(s) 296
SinI GGWCC 6 cut(s) 42, 248, 263, 406, 621, 854
SlaI CTCGAG 1 cut(s) 50
SmlI CTYRAG 2 cut(s) 50, 188
SmoI CTYRAG 2 cut(s) 50, 188
Sse9I AATT 3 cut(s) 298, 489, 635
SseBI AGGCCT 1 cut(s) 145
SspDI GGCGCC 1 cut(s) 275
SspMI CTAG 3 cut(s) 200, 618, 692
StuI AGGCCT 1 cut(s) 145
StyD4I CCNGG 1 cut(s) 955
StyI CCWWGG 1 cut(s) 867
TaaI ACNGT 1 cut(s) 806
TaiI ACGT 1 cut(s) 35
TaqI TCGA 3 cut(s) 51, 296, 302
TaqII GACCGA 1 cut(s) 320
TasI AATT 3 cut(s) 298, 489, 635
TatI WGTACW 1 cut(s) 732
TfiI GAWTC 5 cut(s) 215, 308, 883, 917, 985
Tru1I TTAA 1 cut(s) 840
Tru9I TTAA 1 cut(s) 840
TscAI CASTG 2 cut(s) 331, 461
TseFI GTSAC 1 cut(s) 650
TseI GCWGC 6 cut(s) 196, 370, 563, 611, 614, 961
Tsp45I GTSAC 1 cut(s) 650
TspDTI ATGAA 1 cut(s) 1026
TspRI CASTG 2 cut(s) 331, 461
Tth111I GACNNNGTC 1 cut(s) 31
VneI GTGCAC 1 cut(s) 457
VpaK11BI GGWCC 6 cut(s) 42, 248, 263, 406, 621, 854
XapI RAATTY 1 cut(s) 298
XhoI CTCGAG 1 cut(s) 50
XspI CTAG 3 cut(s) 200, 618, 692
ZraI GACGTC 1 cut(s) 33
Zsp2I ATGCAT 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.