Rh4AG017700

Protein TIFY 4B-like isoform X1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
3488273 .. 3492035
3763 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG017700.1

Sequence Viewer

Length: 960 bp
ATGAGTGCCGGCACTACTACAACCACTACAACGACGACGTTTCGCACCATCCTGGAGAAGCCGCTCAACCAGCTCACCGAGGATGACATTTCTCAGCTCACCCGCGAAGACTGCCGCAAGTACCTCAAAGAAAAAGGAATGCGGAGGCCGTCGTGGAACAAATCGCAGGCGATCCAGCAGGTTATTTCACTCAAGGCGCTGCTGGAGCCCAACGACGACTCCGGCGCCGGAGTTCTCAGAAAGATCGTCGGTCCGCCGCATGGGACCGCGCCCGCGCCGCGGGCGGCTTCGAATTCGACTGATTCAACGAAGGAGGCCAGTGCCGATGTCCAGGGTTGTAAGTCGGCCGAAGAACCGGTGGTGCTGCAGCAGAAGAAAGAACCGCAGAAACCGGTTCGGCAGGACCGGCCGGCCGAACCGGCTGTAAAAGCCATTACTCCAAGCAAAAATCAGTGCACGACTGATGCATCAGTTAGGCAAATGACAATTTTCTACTGCGGCAAGGTGAATGTGTATGATGAAGTGCCACCAGATAAGGCACGAACAATCATGCACCTTGCAGCAAGGCCCAACCATTTGCCTCTGGACAATATTGGACCTGCAGCAGCTAGGTCCTTGCGATGCCAATTTCAGACTGCAGGTGACAAAGATGGCCCCTTCCCACCTAATGCCACAATCCCTCAGGCTATGCAAACAGATAGGATTGCCGACTATACTCAGCTGTACTGGGATAAAGGGAACAACACTCGTGATCCTGAGGGTCAGGCAACTAGAAAAGTCTCGTTGCAGAGATACCGTGAAAAGCGAAAAGACAGGAGACATACCTCAAATGGTAATTCAAGTAGGAGTAGCACAAGCTCTCCACCCCAGCAACCTGGGATGCTACAAGCAGCTGACAATCAGCCCAAGATTCGCTGTCTTCCCGTTGACCTAAATGAAAATGATATCGTGGAATGCTGA

Protein Analysis

319

Amino Acids

35.25

Weight (kDa)

9.19

Isoelectric Point (pI)

52.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 159 - 188 5.4e-16 tify domain
Jas_motif PF09425 255 - 273 1.6e-07 Jas motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 629
Acc36I ACCTGC 3 cut(s) 169, 607, 629
AccB1I GGYRCC 1 cut(s) 224
AccBSI CCGCTC 1 cut(s) 64
AccII CGCG 4 cut(s) 105, 269, 275, 280
AclWI GGATC 2 cut(s) 166, 746
AcoI YGGCCR 3 cut(s) 345, 407, 411
AcsI RAATTY 1 cut(s) 292
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 2 cut(s) 122, 725
AfiI CCNNNNNNNGG 2 cut(s) 260, 279
AgeI ACCGGT 2 cut(s) 355, 391
AgsI TTSAA 2 cut(s) 306, 840
AjnI CCWGG 3 cut(s) 51, 330, 874
AluBI AGCT 6 cut(s) 73, 97, 608, 721, 858, 893
AluI AGCT 6 cut(s) 73, 97, 608, 721, 858, 893
Alw21I GWGCWC 1 cut(s) 458
Alw26I GTCTC 2 cut(s) 784, 811
Alw44I GTGCAC 1 cut(s) 454
AlwI GGATC 2 cut(s) 166, 746
AoxI GGCC 7 cut(s) 146, 315, 345, 407, 411, 566, 652
ApaLI GTGCAC 1 cut(s) 454
ApeKI GCWGC 7 cut(s) 199, 364, 367, 560, 602, 605, 890
ApoI RAATTY 1 cut(s) 292
AsiGI ACCGGT 2 cut(s) 355, 391
AspLEI GCGC 4 cut(s) 199, 227, 271, 277
AspS9I GGNCC 7 cut(s) 251, 264, 403, 567, 596, 612, 653
AsuHPI GGTGA 4 cut(s) 67, 91, 517, 653
AsuII TTCGAA 1 cut(s) 290
AvaII GGWCC 5 cut(s) 251, 264, 403, 596, 612
AxyI CCTNAGG 2 cut(s) 681, 756
BaeGI GKGCMC 1 cut(s) 458
BanI GGYRCC 1 cut(s) 224
BanII GRGCYC 1 cut(s) 210
BauI CACGAG 1 cut(s) 747
BbsI GAAGAC 2 cut(s) 114, 911
Bbv12I GWGCWC 1 cut(s) 458
BbvI GCAGC 7 cut(s) 186, 351, 379, 572, 614, 617, 902
BccI CCATC 2 cut(s) 56, 644
BceAI ACGGC 1 cut(s) 133
BciT130I CCWGG 3 cut(s) 53, 332, 876
BcoDI GTCTC 2 cut(s) 784, 811
BfaI CTAG 2 cut(s) 609, 771
BfmI CTRYAG 3 cut(s) 365, 600, 636
BfoI RGCGCY 2 cut(s) 200, 228
BfuAI ACCTGC 3 cut(s) 169, 607, 629
BglI GCCNNNNNGGC 1 cut(s) 419
Bme1390I CCNGG 3 cut(s) 53, 332, 876
Bme18I GGWCC 5 cut(s) 251, 264, 403, 596, 612
BmgT120I GGNCC 7 cut(s) 251, 264, 403, 567, 596, 612, 653
BmiI GGNNCC 4 cut(s) 207, 226, 265, 655
BmrFI CCNGG 3 cut(s) 53, 332, 876
BmrI ACTGGG 1 cut(s) 736
BmsI GCATC 4 cut(s) 454, 476, 611, 870
BmuI ACTGGG 1 cut(s) 736
BpiI GAAGAC 2 cut(s) 114, 911
BpmI CTGGAG 2 cut(s) 74, 224
Bpu14I TTCGAA 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 176
BsaHI GRCGYC 1 cut(s) 225
BsaJI CCNNGG 4 cut(s) 78, 278, 331, 875
BsaWI WCCGGW 2 cut(s) 355, 391
BsaXI ACNNNNNCTCC 4 cut(s) 203, 233, 844, 874
Bsc4I CCNNNNNNNGG 2 cut(s) 260, 279
Bse118I RCCGGY 6 cut(s) 8, 355, 391, 405, 409, 418
Bse1I ACTGG 2 cut(s) 318, 731
Bse21I CCTNAGG 2 cut(s) 681, 756
BseBI CCWGG 3 cut(s) 53, 332, 876
BseDI CCNNGG 4 cut(s) 78, 278, 331, 875
BseGI GGATG 3 cut(s) 48, 88, 885
BseLI CCNNNNNNNGG 2 cut(s) 260, 279
BseMII CTCAG 5 cut(s) 107, 250, 695, 731, 747
BseNI ACTGG 2 cut(s) 318, 731
BseSI GKGCMC 1 cut(s) 458
BseX3I CGGCCG 3 cut(s) 345, 407, 411
BseXI GCAGC 7 cut(s) 186, 351, 379, 572, 614, 617, 902
BseYI CCCAGC 1 cut(s) 867
Bsh1236I CGCG 4 cut(s) 105, 269, 275, 280
Bsh1285I CGRYCG 3 cut(s) 348, 410, 414
BshFI GGCC 7 cut(s) 148, 317, 347, 409, 413, 568, 654
BshNI GGYRCC 1 cut(s) 224
BshTI ACCGGT 2 cut(s) 355, 391
BsiEI CGRYCG 3 cut(s) 348, 410, 414
BsiHKAI GWGCWC 1 cut(s) 458
BsiSI CCGG 8 cut(s) 9, 222, 228, 356, 392, 406, 410, 419
BslFI GGGAC 1 cut(s) 277
BslI CCNNNNNNNGG 2 cut(s) 260, 279
BsmAI GTCTC 2 cut(s) 784, 811
BsmFI GGGAC 1 cut(s) 277
BsmI GAATGC 2 cut(s) 144, 959
BsnI GGCC 7 cut(s) 148, 317, 347, 409, 413, 568, 654
Bsp119I TTCGAA 1 cut(s) 290
Bsp1286I GDGCHC 2 cut(s) 210, 458
Bsp143I GATC 3 cut(s) 171, 243, 751
BspANI GGCC 7 cut(s) 148, 317, 347, 409, 413, 568, 654
BspCNI CTCAG 5 cut(s) 106, 249, 694, 730, 748
BspFNI CGCG 4 cut(s) 105, 269, 275, 280
BspLI GGNNCC 4 cut(s) 207, 226, 265, 655
BspMAI CTGCAG 3 cut(s) 369, 604, 640
BspMI ACCTGC 3 cut(s) 169, 607, 629
BspPI GGATC 2 cut(s) 166, 746
BspT104I TTCGAA 1 cut(s) 290
BspT107I GGYRCC 1 cut(s) 224
BsrBI CCGCTC 1 cut(s) 64
BsrFI RCCGGY 6 cut(s) 8, 355, 391, 405, 409, 418
BsrI ACTGG 2 cut(s) 318, 731
BssAI RCCGGY 6 cut(s) 8, 355, 391, 405, 409, 418
BssECI CCNNGG 4 cut(s) 78, 278, 331, 875
BssMI GATC 3 cut(s) 171, 243, 751
BssNI GRCGYC 1 cut(s) 225
BssSI CACGAG 1 cut(s) 747
Bst2BI CACGAG 1 cut(s) 747
Bst2UI CCWGG 3 cut(s) 53, 332, 876
Bst4CI ACNGT 1 cut(s) 797
BstACI GRCGYC 1 cut(s) 225
BstBI TTCGAA 1 cut(s) 290
BstC8I GCNNGC 5 cut(s) 10, 168, 273, 282, 411
BstDEI CTNAG 5 cut(s) 93, 236, 681, 717, 756
BstDSI CCRYGG 1 cut(s) 278
BstF5I GGATG 3 cut(s) 48, 88, 885
BstFNI CGCG 4 cut(s) 105, 269, 275, 280
BstH2I RGCGCY 2 cut(s) 200, 228
BstHHI GCGC 4 cut(s) 199, 227, 271, 277
BstKTI GATC 3 cut(s) 174, 246, 754
BstMAI GTCTC 2 cut(s) 784, 811
BstMBI GATC 3 cut(s) 171, 243, 751
BstMCI CGRYCG 3 cut(s) 348, 410, 414
BstMWI GCNNNNNNNGC 8 cut(s) 70, 111, 205, 277, 281, 406, 419, 428
BstNI CCWGG 3 cut(s) 53, 332, 876
BstSCI CCNGG 3 cut(s) 51, 330, 874
BstSFI CTRYAG 3 cut(s) 365, 600, 636
BstSLI GKGCMC 1 cut(s) 458
BstUI CGCG 4 cut(s) 105, 269, 275, 280
BstV1I GCAGC 7 cut(s) 186, 351, 379, 572, 614, 617, 902
BstV2I GAAGAC 2 cut(s) 114, 911
BstXI CCANNNNNNTGG 1 cut(s) 875
BstZI CGGCCG 3 cut(s) 345, 407, 411
Bsu36I CCTNAGG 2 cut(s) 681, 756
BsuRI GGCC 7 cut(s) 148, 317, 347, 409, 413, 568, 654
BtgI CCRYGG 1 cut(s) 278
BtgZI GCGATG 1 cut(s) 634
BtsCI GGATG 3 cut(s) 48, 88, 885
BtsIMutI CAGTG 2 cut(s) 325, 458
BveI ACCTGC 3 cut(s) 169, 607, 629
Cac8I GCNNGC 5 cut(s) 10, 168, 273, 282, 411
CfoI GCGC 4 cut(s) 199, 227, 271, 277
Cfr10I RCCGGY 6 cut(s) 8, 355, 391, 405, 409, 418
Cfr13I GGNCC 7 cut(s) 251, 264, 403, 567, 596, 612, 653
Cfr42I CCGCGG 1 cut(s) 281
CpoI CGGWCCG 1 cut(s) 251
Csp6I GTAC 2 cut(s) 121, 724
CspAI ACCGGT 2 cut(s) 355, 391
CspI CGGWCCG 1 cut(s) 251
CviAII CATG 2 cut(s) 260, 550
CviQI GTAC 2 cut(s) 121, 724
DdeI CTNAG 5 cut(s) 93, 236, 681, 717, 756
DinI GGCGCC 1 cut(s) 226
DpnI GATC 3 cut(s) 173, 245, 753
DpnII GATC 3 cut(s) 171, 243, 751
EaeI YGGCCR 3 cut(s) 345, 407, 411
EagI CGGCCG 3 cut(s) 345, 407, 411
EciI GGCGGA 1 cut(s) 243
EclXI CGGCCG 3 cut(s) 345, 407, 411
Eco24I GRGCYC 1 cut(s) 210
Eco32I GATATC 1 cut(s) 946
Eco47I GGWCC 5 cut(s) 251, 264, 403, 596, 612
Eco52I CGGCCG 3 cut(s) 345, 407, 411
Eco81I CCTNAGG 2 cut(s) 681, 756
EcoO109I RGGNCCY 1 cut(s) 612
EcoRI GAATTC 1 cut(s) 292
EcoRII CCWGG 3 cut(s) 51, 330, 874
EcoRV GATATC 1 cut(s) 946
EcoT22I ATGCAT 1 cut(s) 469
EcoT38I GRGCYC 1 cut(s) 210
EgeI GGCGCC 1 cut(s) 226
EheI GGCGCC 1 cut(s) 226
FaeI CATG 2 cut(s) 263, 553
FaiI YATR 6 cut(s) 261, 516, 551, 689, 714, 822
FaqI GGGAC 1 cut(s) 277
FatI CATG 2 cut(s) 259, 549
FauI CCCGC 3 cut(s) 110, 273, 280
FokI GGATG 3 cut(s) 35, 95, 892
FriOI GRGCYC 1 cut(s) 210
FseI GGCCGGCC 1 cut(s) 413
FspBI CTAG 2 cut(s) 609, 771
GlaI GCGC 4 cut(s) 198, 226, 270, 276
GsaI CCCAGC 1 cut(s) 871
GsuI CTGGAG 2 cut(s) 74, 224
HaeII RGCGCY 2 cut(s) 200, 228
HaeIII GGCC 7 cut(s) 148, 317, 347, 409, 413, 568, 654
HapII CCGG 8 cut(s) 9, 222, 228, 356, 392, 406, 410, 419
HhaI GCGC 4 cut(s) 199, 227, 271, 277
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 2 cut(s) 263, 553
Hin6I GCGC 4 cut(s) 197, 225, 269, 275
HinP1I GCGC 4 cut(s) 197, 225, 269, 275
HincII GTYRAC 1 cut(s) 928
HindII GTYRAC 1 cut(s) 928
HinfI GANTC 3 cut(s) 218, 302, 910
HpaII CCGG 8 cut(s) 9, 222, 228, 356, 392, 406, 410, 419
HphI GGTGA 4 cut(s) 67, 91, 517, 653
Hpy166II GTNNAC 2 cut(s) 456, 928
Hpy188I TCNGA 2 cut(s) 239, 633
Hpy188III TCNNGA 3 cut(s) 584, 749, 755
Hpy8I GTNNAC 2 cut(s) 456, 928
Hpy99I CGWCG 5 cut(s) 37, 40, 154, 218, 251
HpyAV CCTTC 2 cut(s) 304, 667
HpyCH4III ACNGT 1 cut(s) 797
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 9 cut(s) 367, 456, 467, 553, 560, 602, 638, 691, 787
HpyF10VI GCNNNNNNNGC 8 cut(s) 70, 111, 205, 277, 281, 406, 419, 428
HpyF3I CTNAG 5 cut(s) 93, 236, 681, 717, 756
HpySE526I ACGT 1 cut(s) 38
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 2 cut(s) 263, 553
HspAI GCGC 4 cut(s) 197, 225, 269, 275
KasI GGCGCC 1 cut(s) 224
KroI GCCGGC 2 cut(s) 8, 409
KroNI GCCGGC 2 cut(s) 10, 411
KspI CCGCGG 1 cut(s) 281
Kzo9I GATC 3 cut(s) 171, 243, 751
LmnI GCTCC 1 cut(s) 205
Lsp1109I GCAGC 7 cut(s) 186, 351, 379, 572, 614, 617, 902
LweI GCATC 4 cut(s) 454, 476, 611, 870
MaeI CTAG 2 cut(s) 609, 771
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 641
MalI GATC 3 cut(s) 173, 245, 753
MbiI CCGCTC 1 cut(s) 64
MboI GATC 3 cut(s) 171, 243, 751
MboII GAAGA 4 cut(s) 119, 362, 385, 911
MhlI GDGCHC 2 cut(s) 210, 458
MluCI AATT 4 cut(s) 292, 486, 626, 835
Mly113I GGCGCC 1 cut(s) 225
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 8 cut(s) 73, 134, 138, 307, 591, 690, 751, 835
Mph1103I ATGCAT 1 cut(s) 469
MroNI GCCGGC 2 cut(s) 8, 409
MspA1I CMGCKG 3 cut(s) 280, 721, 893
MspI CCGG 8 cut(s) 9, 222, 228, 356, 392, 406, 410, 419
MspR9I CCNGG 3 cut(s) 53, 332, 876
Mva1269I GAATGC 2 cut(s) 144, 959
MvaI CCWGG 3 cut(s) 53, 332, 876
MvnI CGCG 4 cut(s) 105, 269, 275, 280
MwoI GCNNNNNNNGC 8 cut(s) 70, 111, 205, 277, 281, 406, 419, 428
NaeI GCCGGC 2 cut(s) 10, 411
NarI GGCGCC 1 cut(s) 225
NdeII GATC 3 cut(s) 171, 243, 751
NgoMIV GCCGGC 2 cut(s) 8, 409
NlaIII CATG 2 cut(s) 263, 553
NlaIV GGNNCC 4 cut(s) 207, 226, 265, 655
NmuCI GTSAC 1 cut(s) 641
NsiI ATGCAT 1 cut(s) 469
NspV TTCGAA 1 cut(s) 290
PaqCI CACCTGC 1 cut(s) 629
PctI GAATGC 2 cut(s) 144, 959
PdiI GCCGGC 2 cut(s) 10, 411
PfeI GAWTC 2 cut(s) 302, 910
PfoI TCCNGGA 1 cut(s) 51
PinAI ACCGGT 2 cut(s) 355, 391
PleI GAGTC 1 cut(s) 212
PluTI GGCGCC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 212
PpuMI RGGWCCY 1 cut(s) 612
Psp5II RGGWCCY 1 cut(s) 612
Psp6I CCWGG 3 cut(s) 51, 330, 874
PspFI CCCAGC 1 cut(s) 867
PspGI CCWGG 3 cut(s) 51, 330, 874
PspN4I GGNNCC 4 cut(s) 207, 226, 265, 655
PspPI GGNCC 7 cut(s) 251, 264, 403, 567, 596, 612, 653
PspPPI RGGWCCY 1 cut(s) 612
PstI CTGCAG 3 cut(s) 369, 604, 640
PvuII CAGCTG 2 cut(s) 721, 893
RigI GGCCGGCC 1 cut(s) 413
RsaI GTAC 2 cut(s) 122, 725
RsaNI GTAC 2 cut(s) 121, 724
Rsr2I CGGWCCG 1 cut(s) 251
RsrII CGGWCCG 1 cut(s) 251
SacII CCGCGG 1 cut(s) 281
Sau3AI GATC 3 cut(s) 171, 243, 751
Sau96I GGNCC 7 cut(s) 251, 264, 403, 567, 596, 612, 653
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 3 cut(s) 53, 332, 876
SduI GDGCHC 2 cut(s) 210, 458
SfaNI GCATC 4 cut(s) 454, 476, 611, 870
SfcI CTRYAG 3 cut(s) 365, 600, 636
SfoI GGCGCC 1 cut(s) 226
Sfr303I CCGCGG 1 cut(s) 281
SfuI TTCGAA 1 cut(s) 290
SgrBI CCGCGG 1 cut(s) 281
SinI GGWCC 5 cut(s) 251, 264, 403, 596, 612
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 4 cut(s) 292, 486, 626, 835
SspDI GGCGCC 1 cut(s) 224
SspI AATATT 1 cut(s) 592
SspMI CTAG 2 cut(s) 609, 771
StyD4I CCNGG 3 cut(s) 51, 330, 874
TaaI ACNGT 1 cut(s) 797
TaiI ACGT 1 cut(s) 41
TaqI TCGA 2 cut(s) 290, 296
TaqII GACCGA 1 cut(s) 239
TasI AATT 4 cut(s) 292, 486, 626, 835
TatI WGTACW 1 cut(s) 723
TauI GCSGC 6 cut(s) 64, 117, 259, 280, 287, 501
TfiI GAWTC 2 cut(s) 302, 910
TscAI CASTG 2 cut(s) 325, 458
TseFI GTSAC 1 cut(s) 641
TseI GCWGC 7 cut(s) 199, 364, 367, 560, 602, 605, 890
Tsp45I GTSAC 1 cut(s) 641
TspDTI ATGAA 2 cut(s) 534, 951
TspRI CASTG 2 cut(s) 325, 458
VneI GTGCAC 1 cut(s) 454
VpaK11BI GGWCC 5 cut(s) 251, 264, 403, 596, 612
XapI RAATTY 1 cut(s) 292
XspI CTAG 2 cut(s) 609, 771
Zsp2I ATGCAT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.