Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015409.1

Orthogroup ID

OG0003795

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1541

Gene Structure 1541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015409.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 277 bp

atgacaattttctactgcggcaaggtgaatgtgtatgatgaagtgccaccagataaggcacgaacaatcatgcaccttgcagcaaggcccaaccatttgcctctggacaatattggacctgcagcagctaggtccttgcgatgccaatttcagactgcaggtgacaaagatggccctttcccacctaatgccacaatccctcaggctatgcaaacagataggattgccgactatactcagctgtattgggataaagggaacaacactcgtgatcctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007275 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032501 GO:0032502 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0099402 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

92

Amino Acids

10.3

Weight (kDa)

6.7

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14713 AT4G14713 AT4G14713 AT4G14713 AT4G14713 AT4G14720 AT4G14720
fragaria_vesca	FvH4_4g01120 FvH4_4g01120
malus_domestica	MD13G1199500.v1.1 MD16G1199200.v1.1
prunus_persica	Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1 Prupe.1G020900_v2.0.a1
pyrus_communis	pycom13g17310 pycom16g16780
rosa_chinensis	RchiOBHm_Chr4g0387691
rosa_laevigata	RLG00000010101
rosa_multiflora	Rmu_sc0006621.1_g000001 Rmu_sc0015409.1_g000001 Rmu_sc0028325.1_g000001
rosa_roxburghii	Rroxscaffold_5G00334340
rosa_rugosa	Rorug03G0312500 Rorug03G0312600 Rorug03G0312700
rosa_samantha	Rh4AG017700 Rh4BG012600 Rh4CG018900 Rh4DG013500
rosa_wichuraiana	Rw4G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	149
Acc36I	ACCTGC	2 cut(s)	127, 149
AciI	CCGC	1 cut(s)	18
AclWI	GGATC	1 cut(s)	266
AluBI	AGCT	2 cut(s)	128, 241
AluI	AGCT	2 cut(s)	128, 241
AlwI	GGATC	1 cut(s)	266
AoxI	GGCC	2 cut(s)	86, 172
ApeKI	GCWGC	3 cut(s)	80, 122, 125
AspS9I	GGNCC	4 cut(s)	87, 116, 132, 173
AsuHPI	GGTGA	2 cut(s)	37, 173
AvaII	GGWCC	2 cut(s)	116, 132
AxyI	CCTNAGG	1 cut(s)	201
BauI	CACGAG	1 cut(s)	267
BbvI	GCAGC	3 cut(s)	92, 134, 137
BccI	CCATC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	129
BfmI	CTRYAG	2 cut(s)	120, 156
BfuAI	ACCTGC	2 cut(s)	127, 149
BisI	GCNGC	4 cut(s)	19, 81, 123, 126
BlsI	GCNGC	4 cut(s)	20, 82, 124, 127
Bme18I	GGWCC	2 cut(s)	116, 132
BmgT120I	GGNCC	4 cut(s)	87, 116, 132, 173
BmsI	GCATC	1 cut(s)	131
Bse21I	CCTNAGG	1 cut(s)	201
BseMII	CTCAG	2 cut(s)	215, 251
BseXI	GCAGC	3 cut(s)	92, 134, 137
BshFI	GGCC	2 cut(s)	88, 174
BsnI	GGCC	2 cut(s)	88, 174
Bsp143I	GATC	1 cut(s)	271
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	2 cut(s)	88, 174
BspCNI	CTCAG	2 cut(s)	214, 250
BspMAI	CTGCAG	2 cut(s)	124, 160
BspMI	ACCTGC	2 cut(s)	127, 149
BspPI	GGATC	1 cut(s)	266
BssMI	GATC	1 cut(s)	271
BssSI	CACGAG	1 cut(s)	267
Bst2BI	CACGAG	1 cut(s)	267
BstDEI	CTNAG	2 cut(s)	201, 237
BstKTI	GATC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	271
BstSFI	CTRYAG	2 cut(s)	120, 156
BstV1I	GCAGC	3 cut(s)	92, 134, 137
Bsu36I	CCTNAGG	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	88, 174
BtgZI	GCGATG	1 cut(s)	154
BveI	ACCTGC	2 cut(s)	127, 149
Cfr13I	GGNCC	4 cut(s)	87, 116, 132, 173
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	5 cut(s)	88, 128, 174, 206, 241
CviKI_1	RGCY	5 cut(s)	88, 128, 174, 206, 241
DdeI	CTNAG	2 cut(s)	201, 237
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
Eco47I	GGWCC	2 cut(s)	116, 132
Eco81I	CCTNAGG	1 cut(s)	201
EcoO109I	RGGNCCY	1 cut(s)	132
FaeI	CATG	1 cut(s)	73
FaiI	YATR	4 cut(s)	36, 71, 209, 234
FatI	CATG	1 cut(s)	69
Fnu4HI	GCNGC	4 cut(s)	19, 81, 123, 126
Fsp4HI	GCNGC	4 cut(s)	19, 81, 123, 126
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	4 cut(s)	19, 81, 123, 126
HaeIII	GGCC	2 cut(s)	88, 174
Hin1II	CATG	1 cut(s)	73
HphI	GGTGA	2 cut(s)	37, 173
Hpy188I	TCNGA	1 cut(s)	153
Hpy188III	TCNNGA	2 cut(s)	104, 269
HpyCH4V	TGCA	5 cut(s)	73, 80, 122, 158, 211
HpyF3I	CTNAG	2 cut(s)	201, 237
Hsp92II	CATG	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	271
LpnPI	CCDG	5 cut(s)	63, 89, 132, 144, 188
Lsp1109I	GCAGC	3 cut(s)	92, 134, 137
LweI	GCATC	1 cut(s)	131
MaeI	CTAG	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MluCI	AATT	2 cut(s)	6, 146
MnlI	CCTC	2 cut(s)	111, 210
MspA1I	CMGCKG	1 cut(s)	241
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	161
PaqCI	CACCTGC	1 cut(s)	149
PkrI	GCNGC	4 cut(s)	20, 82, 124, 127
PpuMI	RGGWCCY	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	132
PspPI	GGNCC	4 cut(s)	87, 116, 132, 173
PspPPI	RGGWCCY	1 cut(s)	132
PstI	CTGCAG	2 cut(s)	124, 160
PvuII	CAGCTG	1 cut(s)	241
SatI	GCNGC	4 cut(s)	19, 81, 123, 126
Sau3AI	GATC	1 cut(s)	271
Sau96I	GGNCC	4 cut(s)	87, 116, 132, 173
SetI	ASST	8 cut(s)	27, 78, 121, 130, 134, 163, 187, 243
SfaNI	GCATC	1 cut(s)	131
SfcI	CTRYAG	2 cut(s)	120, 156
SinI	GGWCC	2 cut(s)	116, 132
Sse9I	AATT	2 cut(s)	6, 146
SsiI	CCGC	1 cut(s)	18
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	1 cut(s)	129
TasI	AATT	2 cut(s)	6, 146
TauI	GCSGC	1 cut(s)	21
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	3 cut(s)	80, 122, 125
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	54
VpaK11BI	GGWCC	2 cut(s)	116, 132
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.