MD16G1199200.v1.1

Protein TIFY 4B-like isoform X1

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
18010085 .. 18014820
4736 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1199200.v1.1.491

Sequence Viewer

Length: 1026 bp
ATGAACGCCGCCACCACGACGTTTCCCTCCATTCTCGAGAAGCCCCTTAACCAGCTCACCGAGGATGACATTTCCCAGCTCACCCGCGAAGACTGCCGCAAGTACCTCAAAGAAAAAGGAATGCGGCGGCCCTCTTGGAACAAATCTCAGGCGATCCAGCAGGTTATTTCCCTCAAGGCGCTGCTGGAGCCCAACGAAGATTCCGGCGCCGGAGCTCTCAGAAAGATTGTCGTTTCGGCTCAGACGACCACCGCCACCACCCAGCGTGCGGCTTCGAATTCCGCTGATTCAGCTAAGGAAGCGAGCGCCGATGTCCAGGCTTCAGTGTCCGCAGACGAACCAGCGACGCATCCGAGAAATGAACGGCCGAAATCGGTTCCCGAGGATCCGCCGGTCGATGCGGATACCGCGGCCATCAGTCCCAGAAATCAGTGTACAACTGATGCATTAGTTCGGCAAATGACAATTTTCTACAGTGGCAAGGTGAATGTATATGATGGAGTGCCACCTGATAAGGCACGGGCAATCCTGCACTTTGCAGCAGGGCCCAACCATCTGCTTCTGGACAATCAATTTGGTGGTGCTGCAGCAGAAAGGTCCTTACGGTGCCAATATCAGACTGCGGGCGATAAAGATGGCCCTTTCCCTCCTAGTGCAACAATTTCTCAATCAATGCAAACAGGGAAGTTCGGCGAATATACACAGCAGTACTGGGAGAAAGGGAACAGCACTCGTGATCCTGATGCAGAGGGTCAGGCCAGCAGAAAAGTCTCGTTGCAGAGATACCGTGAAAAGCGAAAAGACAGAGAAAGATTAAAGATAAAGAAAAATAGTGGAGCGAATTCTAGCTTGGAGGTTTACTTGAATCATCAACTCAGGACACATACCTCAAATGGTAATTCAAGTCAGAGTGGCACAAGCTCTCCACCCCAACCTGGGCTGCTGCAGACAGCTGAAAATCAGCCAAAGATCCGCTGTCTTCCTGTTGACCTAAACGAGAAGGATATCCTGGAACGCCAAGCTTAA

Protein Analysis

342

Amino Acids

37.41

Weight (kDa)

8.75

Isoelectric Point (pI)

38.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 152 - 181 3.8e-15 tify domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 151
AccB1I GGYRCC 2 cut(s) 206, 606
AccII CGCG 2 cut(s) 87, 410
AclWI GGATC 5 cut(s) 148, 380, 393, 731, 964
AcoI YGGCCR 2 cut(s) 365, 411
AcsI RAATTY 2 cut(s) 277, 841
AcuI CTGAAG 1 cut(s) 306
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 3 cut(s) 104, 436, 710
AfiI CCNNNNNNNGG 3 cut(s) 268, 935, 936
AgsI TTSAA 2 cut(s) 865, 903
AjnI CCWGG 3 cut(s) 315, 934, 1008
AjuI GAANNNNNNNTTGG 2 cut(s) 833, 865
AluBI AGCT 8 cut(s) 55, 79, 215, 293, 849, 921, 953, 1022
AluI AGCT 8 cut(s) 55, 79, 215, 293, 849, 921, 953, 1022
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 1 cut(s) 775
AlwI GGATC 5 cut(s) 148, 380, 393, 731, 964
Ama87I CYCGRG 2 cut(s) 35, 380
AoxI GGCC 6 cut(s) 128, 365, 411, 545, 637, 756
ApaI GGGCCC 1 cut(s) 549
ApeKI GCWGC 6 cut(s) 181, 539, 584, 587, 940, 943
ApoI RAATTY 2 cut(s) 277, 841
ArsI GACNNNNNNTTYG 2 cut(s) 557, 589
AspLEI GCGC 3 cut(s) 181, 209, 308
AspS9I GGNCC 5 cut(s) 129, 545, 546, 597, 638
AsuHPI GGTGA 3 cut(s) 49, 73, 496
AsuII TTCGAA 1 cut(s) 275
AvaI CYCGRG 2 cut(s) 35, 380
AvaII GGWCC 1 cut(s) 597
BaeGI GKGCMC 1 cut(s) 549
BamHI GGATCC 1 cut(s) 385
BanI GGYRCC 2 cut(s) 206, 606
BanII GRGCYC 3 cut(s) 192, 217, 549
BauI CACGAG 1 cut(s) 732
BbsI GAAGAC 2 cut(s) 96, 971
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 6 cut(s) 168, 551, 571, 599, 927, 930
BccI CCATC 4 cut(s) 422, 491, 561, 629
BceAI ACGGC 1 cut(s) 380
BciT130I CCWGG 3 cut(s) 317, 936, 1010
BciVI GTATCC 1 cut(s) 397
BcoDI GTCTC 1 cut(s) 775
BfaI CTAG 2 cut(s) 651, 846
BfmI CTRYAG 3 cut(s) 472, 585, 944
BfoI RGCGCY 3 cut(s) 182, 210, 309
BfuAI ACCTGC 1 cut(s) 151
BfuI GTATCC 1 cut(s) 397
BmcAI AGTACT 1 cut(s) 710
Bme1390I CCNGG 3 cut(s) 317, 936, 1010
Bme18I GGWCC 1 cut(s) 597
BmeT110I CYCGRG 2 cut(s) 35, 380
BmgT120I GGNCC 5 cut(s) 129, 545, 546, 597, 638
BmiI GGNNCC 6 cut(s) 189, 208, 378, 387, 547, 608
BmrFI CCNGG 3 cut(s) 317, 936, 1010
BmrI ACTGGG 1 cut(s) 721
BmsI GCATC 4 cut(s) 358, 388, 433, 733
BmuI ACTGGG 1 cut(s) 721
BpiI GAAGAC 2 cut(s) 96, 971
BpmI CTGGAG 1 cut(s) 206
Bpu10I CCTNAGC 1 cut(s) 294
Bpu14I TTCGAA 1 cut(s) 275
BpuEI CTTGAG 1 cut(s) 158
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 4 cut(s) 60, 381, 408, 935
BsaXI ACNNNNNCTCC 2 cut(s) 907, 937
Bsc4I CCNNNNNNNGG 3 cut(s) 268, 935, 936
Bse118I RCCGGY 1 cut(s) 391
Bse1I ACTGG 1 cut(s) 716
BseBI CCWGG 3 cut(s) 317, 936, 1010
BseDI CCNNGG 4 cut(s) 60, 381, 408, 935
BseGI GGATG 2 cut(s) 70, 349
BseLI CCNNNNNNNGG 3 cut(s) 268, 935, 936
BseMII CTCAG 4 cut(s) 161, 232, 254, 889
BseNI ACTGG 1 cut(s) 716
BseSI GKGCMC 1 cut(s) 549
BseX3I CGGCCG 1 cut(s) 365
BseXI GCAGC 6 cut(s) 168, 551, 571, 599, 927, 930
BseYI CCCAGC 2 cut(s) 75, 261
BsgI GTGCAG 1 cut(s) 515
Bsh1236I CGCG 2 cut(s) 87, 410
Bsh1285I CGRYCG 2 cut(s) 368, 396
BshFI GGCC 6 cut(s) 130, 367, 413, 547, 639, 758
BshNI GGYRCC 2 cut(s) 206, 606
BsiEI CGRYCG 2 cut(s) 368, 396
BsiHKAI GWGCWC 1 cut(s) 217
BsiHKCI CYCGRG 2 cut(s) 35, 380
BsiSI CCGG 3 cut(s) 204, 210, 392
BslFI GGGAC 1 cut(s) 405
BslI CCNNNNNNNGG 3 cut(s) 268, 935, 936
BsmAI GTCTC 1 cut(s) 775
BsmFI GGGAC 1 cut(s) 405
BsmI GAATGC 1 cut(s) 126
BsnI GGCC 6 cut(s) 130, 367, 413, 547, 639, 758
BsoBI CYCGRG 2 cut(s) 35, 380
Bsp119I TTCGAA 1 cut(s) 275
Bsp120I GGGCCC 1 cut(s) 545
Bsp1286I GDGCHC 3 cut(s) 192, 217, 549
Bsp1407I TGTACA 1 cut(s) 434
Bsp143I GATC 4 cut(s) 153, 385, 736, 969
BspANI GGCC 6 cut(s) 130, 367, 413, 547, 639, 758
BspCNI CTCAG 4 cut(s) 160, 231, 253, 888
BspFNI CGCG 2 cut(s) 87, 410
BspLI GGNNCC 6 cut(s) 189, 208, 378, 387, 547, 608
BspMAI CTGCAG 2 cut(s) 589, 948
BspMI ACCTGC 1 cut(s) 151
BspPI GGATC 5 cut(s) 148, 380, 393, 731, 964
BspT104I TTCGAA 1 cut(s) 275
BspT107I GGYRCC 2 cut(s) 206, 606
BsrFI RCCGGY 1 cut(s) 391
BsrGI TGTACA 1 cut(s) 434
BsrI ACTGG 1 cut(s) 716
BssAI RCCGGY 1 cut(s) 391
BssECI CCNNGG 4 cut(s) 60, 381, 408, 935
BssMI GATC 4 cut(s) 153, 385, 736, 969
BssNI GRCGYC 1 cut(s) 207
BssSI CACGAG 1 cut(s) 732
Bst2BI CACGAG 1 cut(s) 732
Bst2UI CCWGG 3 cut(s) 317, 936, 1010
Bst4CI ACNGT 3 cut(s) 476, 606, 788
BstACI GRCGYC 1 cut(s) 207
BstAUI TGTACA 1 cut(s) 434
BstBI TTCGAA 1 cut(s) 275
BstC8I GCNNGC 4 cut(s) 267, 304, 625, 760
BstDEI CTNAG 5 cut(s) 147, 218, 240, 294, 875
BstDSI CCRYGG 1 cut(s) 408
BstF5I GGATG 2 cut(s) 70, 349
BstFNI CGCG 2 cut(s) 87, 410
BstH2I RGCGCY 3 cut(s) 182, 210, 309
BstHHI GCGC 3 cut(s) 181, 209, 308
BstKTI GATC 4 cut(s) 156, 388, 739, 972
BstMAI GTCTC 1 cut(s) 775
BstMBI GATC 4 cut(s) 153, 385, 736, 969
BstMCI CGRYCG 2 cut(s) 368, 396
BstMWI GCNNNNNNNGC 5 cut(s) 93, 187, 290, 299, 407
BstNI CCWGG 3 cut(s) 317, 936, 1010
BstSCI CCNGG 3 cut(s) 315, 934, 1008
BstSFI CTRYAG 3 cut(s) 472, 585, 944
BstSLI GKGCMC 1 cut(s) 549
BstUI CGCG 2 cut(s) 87, 410
BstV1I GCAGC 6 cut(s) 168, 551, 571, 599, 927, 930
BstV2I GAAGAC 2 cut(s) 96, 971
BstX2I RGATCY 2 cut(s) 385, 969
BstYI RGATCY 2 cut(s) 385, 969
BstZI CGGCCG 1 cut(s) 365
BsuI GTATCC 1 cut(s) 397
BsuRI GGCC 6 cut(s) 130, 367, 413, 547, 639, 758
BtgI CCRYGG 1 cut(s) 408
BtsCI GGATG 2 cut(s) 70, 349
BtsIMutI CAGTG 3 cut(s) 330, 437, 481
BveI ACCTGC 1 cut(s) 151
Cac8I GCNNGC 4 cut(s) 267, 304, 625, 760
CfoI GCGC 3 cut(s) 181, 209, 308
Cfr10I RCCGGY 1 cut(s) 391
Cfr13I GGNCC 5 cut(s) 129, 545, 546, 597, 638
Cfr42I CCGCGG 1 cut(s) 411
CseI GACGC 1 cut(s) 355
Csp6I GTAC 3 cut(s) 103, 435, 709
CviQI GTAC 3 cut(s) 103, 435, 709
DdeI CTNAG 5 cut(s) 147, 218, 240, 294, 875
DinI GGCGCC 1 cut(s) 208
DpnI GATC 4 cut(s) 155, 387, 738, 971
DpnII GATC 4 cut(s) 153, 385, 736, 969
EaeI YGGCCR 2 cut(s) 365, 411
EagI CGGCCG 1 cut(s) 365
EciI GGCGGA 1 cut(s) 378
Ecl136II GAGCTC 1 cut(s) 215
EclXI CGGCCG 1 cut(s) 365
Eco24I GRGCYC 3 cut(s) 192, 217, 549
Eco32I GATATC 1 cut(s) 1006
Eco47I GGWCC 1 cut(s) 597
Eco52I CGGCCG 1 cut(s) 365
Eco53kI GAGCTC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 306
Eco88I CYCGRG 2 cut(s) 35, 380
EcoICRI GAGCTC 1 cut(s) 215
EcoO109I RGGNCCY 2 cut(s) 545, 597
EcoRI GAATTC 2 cut(s) 277, 841
EcoRII CCWGG 3 cut(s) 315, 934, 1008
EcoRV GATATC 1 cut(s) 1006
EcoT22I ATGCAT 1 cut(s) 448
EcoT38I GRGCYC 3 cut(s) 192, 217, 549
EgeI GGCGCC 1 cut(s) 208
EheI GGCGCC 1 cut(s) 208
FaiI YATR 4 cut(s) 493, 495, 699, 885
FaqI GGGAC 1 cut(s) 405
FauI CCCGC 2 cut(s) 92, 616
FokI GGATG 2 cut(s) 77, 336
FriOI GRGCYC 3 cut(s) 192, 217, 549
FspBI CTAG 2 cut(s) 651, 846
GlaI GCGC 3 cut(s) 180, 208, 307
GsaI CCCAGC 2 cut(s) 79, 265
GsuI CTGGAG 1 cut(s) 206
HaeII RGCGCY 3 cut(s) 182, 210, 309
HaeIII GGCC 6 cut(s) 130, 367, 413, 547, 639, 758
HapII CCGG 3 cut(s) 204, 210, 392
HgaI GACGC 1 cut(s) 355
HhaI GCGC 3 cut(s) 181, 209, 308
Hin1I GRCGYC 1 cut(s) 207
Hin6I GCGC 3 cut(s) 179, 207, 306
HinP1I GCGC 3 cut(s) 179, 207, 306
HincII GTYRAC 1 cut(s) 988
HindII GTYRAC 1 cut(s) 988
HindIII AAGCTT 1 cut(s) 1020
HinfI GANTC 3 cut(s) 200, 287, 865
HpaII CCGG 3 cut(s) 204, 210, 392
HphI GGTGA 3 cut(s) 49, 73, 496
Hpy166II GTNNAC 3 cut(s) 435, 859, 988
Hpy188I TCNGA 5 cut(s) 221, 243, 354, 618, 909
Hpy188III TCNNGA 7 cut(s) 35, 37, 380, 563, 734, 740, 877
Hpy8I GTNNAC 3 cut(s) 435, 859, 988
Hpy99I CGWCG 2 cut(s) 22, 349
HpyAV CCTTC 1 cut(s) 994
HpyCH4III ACNGT 3 cut(s) 476, 606, 788
HpyCH4IV ACGT 1 cut(s) 20
HpyCH4V TGCA 9 cut(s) 446, 532, 539, 587, 656, 676, 746, 778, 946
HpyF10VI GCNNNNNNNGC 5 cut(s) 93, 187, 290, 299, 407
HpyF3I CTNAG 5 cut(s) 147, 218, 240, 294, 875
HpySE526I ACGT 1 cut(s) 20
Hsp92I GRCGYC 1 cut(s) 207
HspAI GCGC 3 cut(s) 179, 207, 306
KasI GGCGCC 1 cut(s) 206
KspI CCGCGG 1 cut(s) 411
Kzo9I GATC 4 cut(s) 153, 385, 736, 969
LmnI GCTCC 3 cut(s) 187, 212, 836
Lsp1109I GCAGC 6 cut(s) 168, 551, 571, 599, 927, 930
LweI GCATC 4 cut(s) 358, 388, 433, 733
MaeI CTAG 2 cut(s) 651, 846
MaeII ACGT 1 cut(s) 20
MalI GATC 4 cut(s) 155, 387, 738, 971
MboI GATC 4 cut(s) 153, 385, 736, 969
MboII GAAGA 3 cut(s) 101, 209, 971
MflI RGATCY 2 cut(s) 385, 969
MhlI GDGCHC 3 cut(s) 192, 217, 549
MluCI AATT 6 cut(s) 277, 465, 572, 660, 841, 898
Mly113I GGCGCC 1 cut(s) 207
Mph1103I ATGCAT 1 cut(s) 448
MseI TTAA 3 cut(s) 48, 815, 1024
MspA1I CMGCKG 4 cut(s) 284, 410, 953, 975
MspI CCGG 3 cut(s) 204, 210, 392
MspR9I CCNGG 3 cut(s) 317, 936, 1010
Mva1269I GAATGC 1 cut(s) 126
MvaI CCWGG 3 cut(s) 317, 936, 1010
MvnI CGCG 2 cut(s) 87, 410
MwoI GCNNNNNNNGC 5 cut(s) 93, 187, 290, 299, 407
NarI GGCGCC 1 cut(s) 207
NdeII GATC 4 cut(s) 153, 385, 736, 969
NlaIV GGNNCC 6 cut(s) 189, 208, 378, 387, 547, 608
NsiI ATGCAT 1 cut(s) 448
NspV TTCGAA 1 cut(s) 275
PaeR7I CTCGAG 1 cut(s) 35
PcsI WCGNNNNNNNCGW 1 cut(s) 242
PctI GAATGC 1 cut(s) 126
PfeI GAWTC 3 cut(s) 200, 287, 865
PfoI TCCNGGA 1 cut(s) 1008
PluTI GGCGCC 1 cut(s) 210
PpuMI RGGWCCY 1 cut(s) 597
Psp124BI GAGCTC 1 cut(s) 217
Psp5II RGGWCCY 1 cut(s) 597
Psp6I CCWGG 3 cut(s) 315, 934, 1008
PspFI CCCAGC 2 cut(s) 75, 261
PspGI CCWGG 3 cut(s) 315, 934, 1008
PspN4I GGNNCC 6 cut(s) 189, 208, 378, 387, 547, 608
PspOMI GGGCCC 1 cut(s) 545
PspPI GGNCC 5 cut(s) 129, 545, 546, 597, 638
PspPPI RGGWCCY 1 cut(s) 597
PstI CTGCAG 2 cut(s) 589, 948
PsuI RGATCY 2 cut(s) 385, 969
PvuII CAGCTG 1 cut(s) 953
RsaI GTAC 3 cut(s) 104, 436, 710
RsaNI GTAC 3 cut(s) 103, 435, 709
SacI GAGCTC 1 cut(s) 217
SacII CCGCGG 1 cut(s) 411
SaqAI TTAA 3 cut(s) 48, 815, 1024
Sau3AI GATC 4 cut(s) 153, 385, 736, 969
Sau96I GGNCC 5 cut(s) 129, 545, 546, 597, 638
ScaI AGTACT 1 cut(s) 710
ScrFI CCNGG 3 cut(s) 317, 936, 1010
SduI GDGCHC 3 cut(s) 192, 217, 549
SfaNI GCATC 4 cut(s) 358, 388, 433, 733
SfcI CTRYAG 3 cut(s) 472, 585, 944
SfoI GGCGCC 1 cut(s) 208
Sfr274I CTCGAG 1 cut(s) 35
Sfr303I CCGCGG 1 cut(s) 411
SfuI TTCGAA 1 cut(s) 275
SgrBI CCGCGG 1 cut(s) 411
SinI GGWCC 1 cut(s) 597
SlaI CTCGAG 1 cut(s) 35
SmlI CTYRAG 2 cut(s) 35, 173
SmoI CTYRAG 2 cut(s) 35, 173
Sse9I AATT 6 cut(s) 277, 465, 572, 660, 841, 898
SspDI GGCGCC 1 cut(s) 206
SspMI CTAG 2 cut(s) 651, 846
SstI GAGCTC 1 cut(s) 217
StyD4I CCNGG 3 cut(s) 315, 934, 1008
TaaI ACNGT 3 cut(s) 476, 606, 788
TaiI ACGT 1 cut(s) 23
TaqI TCGA 3 cut(s) 36, 275, 396
TasI AATT 6 cut(s) 277, 465, 572, 660, 841, 898
TatI WGTACW 2 cut(s) 434, 708
TauI GCSGC 6 cut(s) 11, 99, 127, 130, 272, 413
TfiI GAWTC 3 cut(s) 200, 287, 865
Tru1I TTAA 3 cut(s) 48, 815, 1024
Tru9I TTAA 3 cut(s) 48, 815, 1024
TscAI CASTG 3 cut(s) 330, 437, 481
TseI GCWGC 6 cut(s) 181, 539, 584, 587, 940, 943
TspDTI ATGAA 2 cut(s) 17, 375
TspRI CASTG 3 cut(s) 330, 437, 481
VpaK11BI GGWCC 1 cut(s) 597
XapI RAATTY 2 cut(s) 277, 841
XhoI CTCGAG 1 cut(s) 35
XspI CTAG 2 cut(s) 651, 846
ZrmI AGTACT 1 cut(s) 710
Zsp2I ATGCAT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.