MD13G1199500.v1.1

Protein TIFY 4B-like isoform X1

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
17721679 .. 17726448
4770 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1199500.v1.1.491

Sequence Viewer

Length: 1050 bp
ATGAACGCCCCCACGACGACGTTTCGCTCCATTCTCGAGAAGCCCCTCAATCAGCTCACCGAGGATGACATTTCCCAGCTCACCCGCGAAGACTGCCGCAAATACCTCAAAGAAAAAGGAATGCGGCGGCCCTCCTGGAACAAATCGCAGGCGATCCAGCAGGTTATTTCGCTCAAGGCGCTGCTGGAGCCCAACGACGATTCCGGCGCCGGAGCTCTCAGAAAGATTGTCGTTTTGCCTCATACGACCACCGCCACCACCCAGCGCGTCAGTACTTTCGCGGCTTCGAATTCCGCTGATTCAGCTAAGGAAGTGAGCCCCGATGTCCAGGCTTCTGTGTCGGCTGACGAATTGGCGCCGCATCCGAGAAATGAACCGCCCAAACCAGCTCCCGAGGACCCACCGGTCTATGCGGATACCACGGCCATCAGTCTCAGAAATCATTGTACAACTGATGCATCAGTTAGTAAAATGACAATTTTCTACAGCGGCAAGGTGAATGTATATGATGGAGTGCCACCTGATAAGGCACGGGCAATCCTGCACCTTGCAGCAGGGCCCAACCATTTGCTTTTGGACAATCAATTTGGTGGTGCTGCAGCAGCAAGATCCTTACATTGCCAATTTCAGACTGCAGGCGATAAAGATGGCCTTTTCCTTCCTAGTGCAACAATTTCTCAGGCAATGCAAACAGGTAACTTTACAGAGAAGGTCGGTGAATATACACAGCAGTACTGGGAGAAAGGGAACAACACTCGTGATCCTGATGCAGAGGGTCAGGCGAACAGAAAAGTCTCGTTGCAGAGATACCGTGAAAAGCGAAAAGACAGGGAAAAATTAAAGATTAAGAAAAATATTGGATCGAATACTAGCTTGGAGGTTTACTTGAATCGTCAACTCAGGATACATACCTCAAATGGTAATTCAAGTCAGTATGGCACAAGCTCTCCACCCCAACCTGAGCTGCTACAGACAGCTGAAAATCAGCCAAGGTTCCGCTGTCTTCCTGTTGACCTAAACGAGAAGGATATCCTGGAACGCCGGACTTGA

Protein Analysis

350

Amino Acids

38.68

Weight (kDa)

8.88

Isoelectric Point (pI)

38.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 156 - 185 5.4e-15 tify domain
Jas_motif PF09425 260 - 277 6.7e-07 Jas motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 404
Acc36I ACCTGC 1 cut(s) 151
AccB1I GGYRCC 2 cut(s) 206, 355
AccII CGCG 3 cut(s) 87, 267, 281
AclWI GGATC 4 cut(s) 148, 603, 755, 868
AcoI YGGCCR 1 cut(s) 423
AcsI RAATTY 1 cut(s) 289
AcyI GRCGYC 2 cut(s) 207, 356
AfaI GTAC 3 cut(s) 274, 448, 734
AgeI ACCGGT 1 cut(s) 403
AgsI TTSAA 2 cut(s) 889, 927
AjnI CCWGG 3 cut(s) 134, 327, 1032
AjuI GAANNNNNNNTTGG 2 cut(s) 857, 889
AluBI AGCT 9 cut(s) 55, 79, 215, 305, 389, 873, 945, 964, 977
AluI AGCT 9 cut(s) 55, 79, 215, 305, 389, 873, 945, 964, 977
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 2 cut(s) 437, 799
AlwI GGATC 4 cut(s) 148, 603, 755, 868
Ama87I CYCGRG 2 cut(s) 35, 392
AoxI GGCC 4 cut(s) 128, 423, 557, 649
ApaI GGGCCC 1 cut(s) 561
ApeKI GCWGC 6 cut(s) 181, 551, 596, 599, 602, 964
ApoI RAATTY 1 cut(s) 289
ArsI GACNNNNNNTTYG 2 cut(s) 569, 601
AsiGI ACCGGT 1 cut(s) 403
AspLEI GCGC 4 cut(s) 181, 209, 267, 358
AspS9I GGNCC 4 cut(s) 129, 397, 557, 558
AsuHPI GGTGA 4 cut(s) 49, 73, 508, 728
AsuII TTCGAA 1 cut(s) 287
AvaI CYCGRG 2 cut(s) 35, 392
AvaII GGWCC 1 cut(s) 397
BaeGI GKGCMC 1 cut(s) 561
BanI GGYRCC 2 cut(s) 206, 355
BanII GRGCYC 4 cut(s) 192, 217, 320, 561
BauI CACGAG 1 cut(s) 756
BbsI GAAGAC 2 cut(s) 96, 995
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 6 cut(s) 168, 563, 583, 611, 614, 951
BccI CCATC 3 cut(s) 434, 503, 641
BceAI ACGGC 1 cut(s) 438
BciT130I CCWGG 3 cut(s) 136, 329, 1034
BciVI GTATCC 2 cut(s) 409, 897
BcoDI GTCTC 2 cut(s) 437, 799
BfaI CTAG 2 cut(s) 663, 870
BfmI CTRYAG 4 cut(s) 484, 597, 633, 968
BfoI RGCGCY 3 cut(s) 182, 210, 359
BfuAI ACCTGC 1 cut(s) 151
BfuI GTATCC 2 cut(s) 409, 897
BmcAI AGTACT 2 cut(s) 274, 734
Bme1390I CCNGG 3 cut(s) 136, 329, 1034
Bme18I GGWCC 1 cut(s) 397
BmeT110I CYCGRG 2 cut(s) 35, 392
BmgT120I GGNCC 4 cut(s) 129, 397, 557, 558
BmiI GGNNCC 6 cut(s) 189, 208, 357, 399, 559, 995
BmrFI CCNGG 3 cut(s) 136, 329, 1034
BmrI ACTGGG 1 cut(s) 745
BmsI GCATC 4 cut(s) 370, 445, 467, 757
BmuI ACTGGG 1 cut(s) 745
BpiI GAAGAC 2 cut(s) 96, 995
BpmI CTGGAG 1 cut(s) 206
Bpu10I CCTNAGC 2 cut(s) 306, 960
Bpu14I TTCGAA 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 158
BsaHI GRCGYC 2 cut(s) 207, 356
BsaJI CCNNGG 4 cut(s) 60, 393, 420, 989
BsaWI WCCGGW 1 cut(s) 403
BsaXI ACNNNNNCTCC 2 cut(s) 931, 961
Bse118I RCCGGY 1 cut(s) 403
Bse1I ACTGG 1 cut(s) 740
Bse3DI GCAATG 2 cut(s) 616, 690
BseBI CCWGG 3 cut(s) 136, 329, 1034
BseDI CCNNGG 4 cut(s) 60, 393, 420, 989
BseGI GGATG 2 cut(s) 70, 361
BseMI GCAATG 2 cut(s) 616, 690
BseMII CTCAG 5 cut(s) 232, 448, 692, 913, 951
BseNI ACTGG 1 cut(s) 740
BseSI GKGCMC 1 cut(s) 561
BseXI GCAGC 6 cut(s) 168, 563, 583, 611, 614, 951
BseYI CCCAGC 2 cut(s) 75, 261
BsgI GTGCAG 1 cut(s) 527
Bsh1236I CGCG 3 cut(s) 87, 267, 281
BshFI GGCC 4 cut(s) 130, 425, 559, 651
BshNI GGYRCC 2 cut(s) 206, 355
BshTI ACCGGT 1 cut(s) 403
BsiHKAI GWGCWC 1 cut(s) 217
BsiHKCI CYCGRG 2 cut(s) 35, 392
BsiSI CCGG 4 cut(s) 204, 210, 404, 1042
BsmAI GTCTC 2 cut(s) 437, 799
BsmI GAATGC 1 cut(s) 126
BsnI GGCC 4 cut(s) 130, 425, 559, 651
BsoBI CYCGRG 2 cut(s) 35, 392
Bsp119I TTCGAA 1 cut(s) 287
Bsp120I GGGCCC 1 cut(s) 557
Bsp1286I GDGCHC 4 cut(s) 192, 217, 320, 561
Bsp1407I TGTACA 1 cut(s) 446
Bsp143I GATC 4 cut(s) 153, 608, 760, 860
BspANI GGCC 4 cut(s) 130, 425, 559, 651
BspCNI CTCAG 5 cut(s) 231, 447, 691, 912, 952
BspFNI CGCG 3 cut(s) 87, 267, 281
BspLI GGNNCC 6 cut(s) 189, 208, 357, 399, 559, 995
BspMAI CTGCAG 2 cut(s) 601, 637
BspMI ACCTGC 1 cut(s) 151
BspPI GGATC 4 cut(s) 148, 603, 755, 868
BspT104I TTCGAA 1 cut(s) 287
BspT107I GGYRCC 2 cut(s) 206, 355
BsrDI GCAATG 2 cut(s) 616, 690
BsrFI RCCGGY 1 cut(s) 403
BsrGI TGTACA 1 cut(s) 446
BsrI ACTGG 1 cut(s) 740
BssAI RCCGGY 1 cut(s) 403
BssECI CCNNGG 4 cut(s) 60, 393, 420, 989
BssMI GATC 4 cut(s) 153, 608, 760, 860
BssNI GRCGYC 2 cut(s) 207, 356
BssSI CACGAG 1 cut(s) 756
BssT1I CCWWGG 1 cut(s) 989
Bst2BI CACGAG 1 cut(s) 756
Bst2UI CCWGG 3 cut(s) 136, 329, 1034
Bst4CI ACNGT 1 cut(s) 812
BstACI GRCGYC 2 cut(s) 207, 356
BstAUI TGTACA 1 cut(s) 446
BstBI TTCGAA 1 cut(s) 287
BstC8I GCNNGC 2 cut(s) 150, 637
BstDEI CTNAG 6 cut(s) 218, 306, 434, 678, 899, 960
BstDSI CCRYGG 1 cut(s) 420
BstF5I GGATG 2 cut(s) 70, 361
BstFNI CGCG 3 cut(s) 87, 267, 281
BstH2I RGCGCY 3 cut(s) 182, 210, 359
BstHHI GCGC 4 cut(s) 181, 209, 267, 358
BstKTI GATC 4 cut(s) 156, 611, 763, 863
BstMAI GTCTC 2 cut(s) 437, 799
BstMBI GATC 4 cut(s) 153, 608, 760, 860
BstMWI GCNNNNNNNGC 5 cut(s) 93, 178, 187, 302, 602
BstNI CCWGG 3 cut(s) 136, 329, 1034
BstSCI CCNGG 3 cut(s) 134, 327, 1032
BstSFI CTRYAG 4 cut(s) 484, 597, 633, 968
BstSLI GKGCMC 1 cut(s) 561
BstUI CGCG 3 cut(s) 87, 267, 281
BstV1I GCAGC 6 cut(s) 168, 563, 583, 611, 614, 951
BstV2I GAAGAC 2 cut(s) 96, 995
BstX2I RGATCY 1 cut(s) 608
BstYI RGATCY 1 cut(s) 608
BsuI GTATCC 2 cut(s) 409, 897
BsuRI GGCC 4 cut(s) 130, 425, 559, 651
BtgI CCRYGG 1 cut(s) 420
BtsCI GGATG 2 cut(s) 70, 361
BveI ACCTGC 1 cut(s) 151
Cac8I GCNNGC 2 cut(s) 150, 637
CfoI GCGC 4 cut(s) 181, 209, 267, 358
Cfr10I RCCGGY 1 cut(s) 403
Cfr13I GGNCC 4 cut(s) 129, 397, 557, 558
CseI GACGC 1 cut(s) 256
Csp6I GTAC 3 cut(s) 273, 447, 733
CspAI ACCGGT 1 cut(s) 403
CviQI GTAC 3 cut(s) 273, 447, 733
DdeI CTNAG 6 cut(s) 218, 306, 434, 678, 899, 960
DinI GGCGCC 2 cut(s) 208, 357
DpnI GATC 4 cut(s) 155, 610, 762, 862
DpnII GATC 4 cut(s) 153, 608, 760, 860
DrdI GACNNNNNNGTC 1 cut(s) 404
DseDI GACNNNNNNGTC 1 cut(s) 404
EaeI YGGCCR 1 cut(s) 423
Ecl136II GAGCTC 1 cut(s) 215
Eco130I CCWWGG 1 cut(s) 989
Eco24I GRGCYC 4 cut(s) 192, 217, 320, 561
Eco32I GATATC 1 cut(s) 1030
Eco47I GGWCC 1 cut(s) 397
Eco53kI GAGCTC 1 cut(s) 215
Eco88I CYCGRG 2 cut(s) 35, 392
EcoICRI GAGCTC 1 cut(s) 215
EcoO109I RGGNCCY 2 cut(s) 397, 557
EcoRI GAATTC 1 cut(s) 289
EcoRII CCWGG 3 cut(s) 134, 327, 1032
EcoRV GATATC 1 cut(s) 1030
EcoT14I CCWWGG 1 cut(s) 989
EcoT22I ATGCAT 1 cut(s) 460
EcoT38I GRGCYC 4 cut(s) 192, 217, 320, 561
EgeI GGCGCC 2 cut(s) 208, 357
EheI GGCGCC 2 cut(s) 208, 357
ErhI CCWWGG 1 cut(s) 989
FaiI YATR 7 cut(s) 243, 411, 505, 507, 723, 909, 936
FalI AAGNNNNNCTT 2 cut(s) 636, 668
FauI CCCGC 1 cut(s) 92
FokI GGATG 2 cut(s) 77, 348
FriOI GRGCYC 4 cut(s) 192, 217, 320, 561
FspBI CTAG 2 cut(s) 663, 870
GlaI GCGC 4 cut(s) 180, 208, 266, 357
GsaI CCCAGC 2 cut(s) 79, 265
GsuI CTGGAG 1 cut(s) 206
HaeII RGCGCY 3 cut(s) 182, 210, 359
HaeIII GGCC 4 cut(s) 130, 425, 559, 651
HapII CCGG 4 cut(s) 204, 210, 404, 1042
HgaI GACGC 1 cut(s) 256
HhaI GCGC 4 cut(s) 181, 209, 267, 358
Hin1I GRCGYC 2 cut(s) 207, 356
Hin6I GCGC 4 cut(s) 179, 207, 265, 356
HinP1I GCGC 4 cut(s) 179, 207, 265, 356
HincII GTYRAC 2 cut(s) 896, 1012
HindII GTYRAC 2 cut(s) 896, 1012
HinfI GANTC 3 cut(s) 200, 299, 889
HpaII CCGG 4 cut(s) 204, 210, 404, 1042
HphI GGTGA 4 cut(s) 49, 73, 508, 728
Hpy166II GTNNAC 3 cut(s) 883, 896, 1012
Hpy188I TCNGA 4 cut(s) 221, 366, 437, 630
Hpy188III TCNNGA 6 cut(s) 35, 37, 392, 758, 764, 901
Hpy8I GTNNAC 3 cut(s) 883, 896, 1012
Hpy99I CGWCG 3 cut(s) 19, 22, 200
HpyAV CCTTC 3 cut(s) 668, 703, 1018
HpyCH4III ACNGT 1 cut(s) 812
HpyCH4IV ACGT 1 cut(s) 20
HpyCH4V TGCA 9 cut(s) 458, 544, 551, 599, 635, 668, 688, 770, 802
HpyF10VI GCNNNNNNNGC 5 cut(s) 93, 178, 187, 302, 602
HpyF3I CTNAG 6 cut(s) 218, 306, 434, 678, 899, 960
HpySE526I ACGT 1 cut(s) 20
Hsp92I GRCGYC 2 cut(s) 207, 356
HspAI GCGC 4 cut(s) 179, 207, 265, 356
KasI GGCGCC 2 cut(s) 206, 355
Kzo9I GATC 4 cut(s) 153, 608, 760, 860
LmnI GCTCC 4 cut(s) 32, 187, 212, 394
Lsp1109I GCAGC 6 cut(s) 168, 563, 583, 611, 614, 951
LweI GCATC 4 cut(s) 370, 445, 467, 757
MaeI CTAG 2 cut(s) 663, 870
MaeII ACGT 1 cut(s) 20
MaeIII GTNAC 1 cut(s) 695
MalI GATC 4 cut(s) 155, 610, 762, 862
MboI GATC 4 cut(s) 153, 608, 760, 860
MboII GAAGA 2 cut(s) 101, 995
MflI RGATCY 1 cut(s) 608
MhlI GDGCHC 4 cut(s) 192, 217, 320, 561
MluCI AATT 8 cut(s) 289, 350, 477, 584, 623, 672, 836, 922
Mly113I GGCGCC 2 cut(s) 207, 356
MnlI CCTC 9 cut(s) 55, 56, 116, 142, 249, 388, 766, 871, 922
Mph1103I ATGCAT 1 cut(s) 460
MseI TTAA 2 cut(s) 839, 846
MspA1I CMGCKG 4 cut(s) 296, 489, 977, 999
MspI CCGG 4 cut(s) 204, 210, 404, 1042
MspR9I CCNGG 3 cut(s) 136, 329, 1034
Mva1269I GAATGC 1 cut(s) 126
MvaI CCWGG 3 cut(s) 136, 329, 1034
MvnI CGCG 3 cut(s) 87, 267, 281
MwoI GCNNNNNNNGC 5 cut(s) 93, 178, 187, 302, 602
NarI GGCGCC 2 cut(s) 207, 356
NdeII GATC 4 cut(s) 153, 608, 760, 860
NlaIV GGNNCC 6 cut(s) 189, 208, 357, 399, 559, 995
NsiI ATGCAT 1 cut(s) 460
NspV TTCGAA 1 cut(s) 287
PaeR7I CTCGAG 1 cut(s) 35
PctI GAATGC 1 cut(s) 126
PfeI GAWTC 3 cut(s) 200, 299, 889
PfoI TCCNGGA 2 cut(s) 134, 1032
PinAI ACCGGT 1 cut(s) 403
PluTI GGCGCC 2 cut(s) 210, 359
PpuMI RGGWCCY 1 cut(s) 397
Psp124BI GAGCTC 1 cut(s) 217
Psp5II RGGWCCY 1 cut(s) 397
Psp6I CCWGG 3 cut(s) 134, 327, 1032
PspFI CCCAGC 2 cut(s) 75, 261
PspGI CCWGG 3 cut(s) 134, 327, 1032
PspN4I GGNNCC 6 cut(s) 189, 208, 357, 399, 559, 995
PspOMI GGGCCC 1 cut(s) 557
PspPI GGNCC 4 cut(s) 129, 397, 557, 558
PspPPI RGGWCCY 1 cut(s) 397
PstI CTGCAG 2 cut(s) 601, 637
PsuI RGATCY 1 cut(s) 608
PvuII CAGCTG 1 cut(s) 977
RsaI GTAC 3 cut(s) 274, 448, 734
RsaNI GTAC 3 cut(s) 273, 447, 733
SacI GAGCTC 1 cut(s) 217
SaqAI TTAA 2 cut(s) 839, 846
Sau3AI GATC 4 cut(s) 153, 608, 760, 860
Sau96I GGNCC 4 cut(s) 129, 397, 557, 558
ScaI AGTACT 2 cut(s) 274, 734
ScrFI CCNGG 3 cut(s) 136, 329, 1034
SduI GDGCHC 4 cut(s) 192, 217, 320, 561
SfaNI GCATC 4 cut(s) 370, 445, 467, 757
SfcI CTRYAG 4 cut(s) 484, 597, 633, 968
SfoI GGCGCC 2 cut(s) 208, 357
Sfr274I CTCGAG 1 cut(s) 35
SfuI TTCGAA 1 cut(s) 287
SinI GGWCC 1 cut(s) 397
SlaI CTCGAG 1 cut(s) 35
SmlI CTYRAG 2 cut(s) 35, 173
SmoI CTYRAG 2 cut(s) 35, 173
Sse9I AATT 8 cut(s) 289, 350, 477, 584, 623, 672, 836, 922
SspDI GGCGCC 2 cut(s) 206, 355
SspI AATATT 1 cut(s) 856
SspMI CTAG 2 cut(s) 663, 870
SstI GAGCTC 1 cut(s) 217
StyD4I CCNGG 3 cut(s) 134, 327, 1032
StyI CCWWGG 1 cut(s) 989
TaaI ACNGT 1 cut(s) 812
TaiI ACGT 1 cut(s) 23
TaqI TCGA 3 cut(s) 36, 287, 863
TasI AATT 8 cut(s) 289, 350, 477, 584, 623, 672, 836, 922
TatI WGTACW 3 cut(s) 272, 446, 732
TauI GCSGC 6 cut(s) 99, 127, 130, 284, 361, 492
TfiI GAWTC 3 cut(s) 200, 299, 889
Tru1I TTAA 2 cut(s) 839, 846
Tru9I TTAA 2 cut(s) 839, 846
TseI GCWGC 6 cut(s) 181, 551, 596, 599, 602, 964
TspDTI ATGAA 2 cut(s) 17, 387
VpaK11BI GGWCC 1 cut(s) 397
XapI RAATTY 1 cut(s) 289
XhoI CTCGAG 1 cut(s) 35
XspI CTAG 2 cut(s) 663, 870
ZrmI AGTACT 2 cut(s) 274, 734
Zsp2I ATGCAT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.